J. gen. Virol. (1989), 70, 37-43. Printedin Great Britain 37 Key words:flaviviruses/neutralization/antigenic relationships Antigenic Relationships between Flaviviruses as Determined by Cross-neutralization Tests with Polyclonal Antisera By C H A R L E S H. C A L I S H E R , 1. N I C K K A R A B A T S O S , 1 J O E L M. D A L R Y M P L E , z R O B E R T E. S H O P E , 3 J A M E S S. P O R T E R F I E L D , 4 E D W I N G. W E S T A W A Y s AND W A L T E R E. B R A N D T 6 1 Division of Vector-Borne Viral Diseases, Center for Infectious Diseases, Centers for Disease Control Public Health Service, U.S. Department of Health and Human Services, P.O. Box 2087, Fort Collins, Colorado 80522-2087, 2 U.S. Army Medical Research Institute for Infectious Diseases, Fort Detrick, Frederick, Maryland 21701-5011, 3 Yale Arbovirus Research Unit, Department of Epidemiology and Public Health, Yale University School of Medicine, 60 College Street, New Haven, Connecticut 06510, U.S.A., 4 Sir William Dunn School of Pathology, University of Oxford, South Parks Road, Oxford OX1 3RE, U.K., 5 Department of Microbiology, Monash University Medical School Clayton, Victoria 3168, Australia and 6 U.S. Army Medical Material Development Activity, Frederick, Maryland 21701-5009, U.S.A. (Accepted 4 October 1988) SUMMARY The recently established virus family Flaviviridae contains at least 68 recognized members. Sixty-six of these viruses were tested by cross-neutralization in cell cultures. Flaviviruses were separated into eight complexes [tick-borne encephalitis (12 viruses), Rio Bravo (six), Japanese encephalitis (10), Tyuleniy (three), Ntaya (five), Uganda S (four), dengue (four) and Modoc (five)] containing 49 viruses; 17 other viruses were not sufficiently related to warrant inclusion in any of these complexes. INTRODUCTION The Subcommittee on InterRelationships among Catalogued Arboviruses (SIRACA) of the American Committee on Arthropod-Borne Viruses periodically reviews published results of tests of antigenic relationships of registered arboviruses. Such reviews provide guidelines for defining the antigenic classifications of these viruses. Where possible, arboviruses are incorporated into the general scheme of classification defined by the International Committee for the Taxonomy of Viruses (ICTV) (Matthews, 1982). The rationale and scheme for classifying viruses has been presented for the family Togaviridae, genus Alphavirus (Calisher et al., 1980). Classification was proposed for the flaviviruses (formerly the group B arboviruses), which were at that time included in the family Togaviridae (Porterfield et al., 1978). Westaway et al. (1985), summarizing replication strategies and morphological, morphogenetic and biochemical characteristics of the alphaviruses and flaviviruses, suggested that the differences between them warrant creation of a separate family, Flaviviridae, for which the type species is yellow fever virus; this change has been approved by the ICTV. While these viruses can be classified based on available data, the most recent comprehensive study of the cross-reactivities of the flaviviruses was in 1974 by de Madrid & Porterfield, who used cross-neutralization tests with 42 group B arboviruses, and were able to confirm the existence of antigenic subgroups (antigenic complexes) within the genus (Theiler & Downs, 1973). Since 1974, 24 additional viruses related antigenically to the original 42 have been registered in the International Catalogue of Arboviruses (American Committee on Arthropod-Borne Viruses, 1985) or have been isolated but not yet registered. Our work was carried out to update that of de Madrid & Porterfield (1974), The results essentially confirm their conclusions and extend them, suggesting that the flaviviruses may be separated into at least eight antigenic 0000-8526 Downloaded from www.microbiologyresearch.org by IP: 88.99.165.207 On: Thu, 15 Jun 2017 22:23:38 38 c.H. CALISHER AND OTHERS complexes, including 49 viruses, and t h a t 17 o t h e r viruses are not related closely e n o u g h to w a r r a n t inclusion in any of these c o m p l e x e s ; these are relegated to an ' u n a s s i g n e d ' category. METHODS Viruses. Sixty-two viruses registered in the International Catalogue of Arboviruses (American Committee on Arthropod-Borne Viruses, 1985) and four unregistered viruses and their respective polyclonal antibodies, prepared as hyperimmune mouse ascitic fluids (Tikasingh et al., 1966), were cross-tested. These 66 viruses are considered members of the same serogroup, family and genus because they are serologically interrelated, as shown by one or more tests such as haemagglutination inhibition, complement fixation, or neutralization (N). Not all viruses of the family cross-react with all others; however, cross-reactivity of each virus with at least one other member of the family has been documented. Serological cross-reactivity of viruses implies the sharing of closely related antigenic sites or epitopes; cross-reactivity in N tests depends on epitopes present at the surface of the virion on the envelope glycoprotein (Trent, 1977). Absettarov, Hanzalova, Hypr and Kumlinge viruses were not included in this study because Clarke (1962, 1964) and, more recently, Heinz et al. (Heinz & K unz, 1981 ; Heinz et al., 1983) and Stephenson et al. (1984) have shown that these viruses have the same antigenic characteristics as the Stillerova strain, the suggested prototype for Central European encephalitis virus strains (Clarke, 1962), which we used. Kedougou and Yaounde viruses, although registered in the Catalogue of Arboviruses (American Committee on Arthropod-Borne Viruses, 1985), were not available at the time of the complete cross-tests. Mention of the unregistered Yokose virus is not intended to constitute priority of publication. Wesselsbron virus is restricted by the U.S. Department of Agriculture and could not be included in this study, but a potent antiserum for this virus was included. Conversely, Central European encephalitis virus was included for testing, but a potent homologous antibody preparation was not available. Two possible members of the family Flaviviridae, cell-fusing agent and simian haemorrhagic fever virus (Westaway et al., 1985) were not included in these cross-N tests. Virus titrations and assays. Viruses were titrated by plaque assay in serially propagated Vero, LLC-MK2 and PS cell cultures and in primary Pekin duck embryo cell cultures. Optimal systems, based on titre and size and clarity of plaques, were chosen for N tests. Vero cells were used for Alfuy, Apoi, Bagaza, Banzi, Cacipacore, Bouboui, Bussuquara, Gadgets Gully, Edge Hill, Entebbe bat, Israel turkey meningoencephalitis, Karshi, Koutango, Kunjin, Kyasanur Forest disease, Langat, louping ill, Murray Valley encephalitis, Naranjal, Negishi, Omsk haemorrhagic fever, Rio Bravo, Rocio, Russian spring-summer encephalitis, Saboya, Spondweni, Tembusu, Tyuleniy, Uganda S and Zika viruses. LLC-MK2 cells were used for Aroa, Bukalasa bat, Carey Island, Dakar bat, dengue 1, dengue 2, dengue 3, dengue 4, Ilheus, Japanese encephalitis, Jutiapa, Modoc, Montana Myotis leukoencephalitis, Phnom Penh bat, Sal Vieja, San Perlita, Saumarez Reef, Sepik, Sokuluk, St Louis encephalitis, Tamana bat, Usutu, West Nile and yellow fever viruses. PS cells were used for Cowbone Ridge, Jugra, Kadam, Kokobera, Meaban, Powassan, Stratford and Yokose viruses. Duck embryo cells were used for Ntaya and Royal Farm viruses. Homologous serum dilution 90~ plaque reduction N titres were determined for each immune reagent (Lindsey et al., 1976). Homologous N titres also were determined in sub-optimal (lower titre or less distinct plaques) systems for 25 of these viruses to detect differences due to the cell system used; none was noted. Mouse hyperimmune ascitic fluids were screened for heterologous reactivity at a 1 : 20 dilution to detect minimal crossreactivity. Endpoint titres were subsequently determined for virus-antibody pairs reacting at the screening dilution. Antibody was allowed to remain in contact with the cells throughout the assay, i.e. infected cells were not washed before addition of the agar overlay (Westaway, 1966). Each virus was tested simultaneously with all immune reagents, minimizing variation in virus dose (approx. 100 p.f.u.) and being convenient for subsequent additions of second overlay containing neutral red stain. Considerable difficulty was encountered with Meaban virus. Initially, it formed plaques in LLC-MK2 cells, but subsequent passages of these cells were not suitable for plaque assays with this virus. Ultimately, plaque assays and N tests with Meaban virus were carried out using PS cells overlaid with an enriched agar medium containing Eagle's MEM with Eade's salts, 10~ heat-inactivated foetal bovine serum, 1~ non-essential amino acids, and 4 mM-L-glutamine per mL RESULTS F o r classification purposes, we use a previously p u b l i s h e d definition of serogroup (Calisher e t al., 1980): two or m o r e viruses, distinct f r o m e a c h o t h e r by q u a n t i t a t i v e serological criteria (fourfold or greater differences b e t w e e n h o m o l o g o u s and heterologous titres o f b o t h s e r u m samples) in one or m o r e tests, but related to e a c h o t h e r or to o t h e r viruses by s o m e (any) serological method. Viruses closely related w i t h i n a serogroup but distinct f r o m e a c h o t h e r are c o n s i d e r e d to constitute an a n t i g e n i c complex. T a b l e s 1 to 8 present s u m m a r i e s o f N tests b e t w e e n 49 viruses and 48 a n t i b o d y p r e p a r a t i o n s neutralizing one or m o r e flaviviruses. Cross-reactivities j u d g e d to be m i n o r , usually m o r e t h a n Downloaded from www.microbiologyresearch.org by IP: 88.99.165.207 On: Thu, 15 Jun 2017 22:23:38 Antigenic classification of flaviviruses T a b l e 1. 39 Cross-neutralization of flaviviruses in the tick-borne encephalitis antigenic complex Titre* of antibody to Virust RSSE OMSK RSSE OMSK CEE LI KFD LGT NEG POW KSI RF CI PPB 7 11 11 7 7 7 3 3 3 1 5 11 7 5 3 7 2 2 LI KFD LGT 1 7 9 7 1 3 1 1 1 5 5 7 5 9 7 2 2 5 9 7 5 3 9 2 2 1 1 NEG POW KSI 7 7 9 1 1 RF CI PPB 3 5 6 3 1 1 8 3 3 5 5 4 2 * Titre expressed as the number of dilutions with neutralizing antibody, i.e. 1 : 20, 1 : 4 0 . . . 1 : 1280 are shown as 1, 2 . . . 7; a blank space signifies < 1:20. Homologous reactions are in bold type. t Viruses are designated RSSE, Russian spring-summer encephalitis; OMSK, Omsk haemorrhagic fever; CEE, Central European encephalitis; LI, louping ill; KFD, Kyasanur Forest disease; LGT, Langat; NEG, Negishi; POW, Powassan; KSI, Karshi; RF, Royal Farm; CI, Carey Island; PPB, Phnom Penh bat. T a b l e 2. Cross-neutralization offlaviviruses in the Rio Bravo antigenic complex Titre* of antibody to f Virust RB ENT RB ENT DB BUK SAB APOI 5 2 5 DB BUK SAB APO'I 1 1 9 1 5 3 3 3 5 2 2 1 9 * See Table 1. t Viruses are designated RB, Rio Bravo; ENT, Entebhe bat; DB, Dakar bat; BUK, Bukalasa bat; Saboya; APOI, Apoi. T a b l e 3. SAB, Cross-neutralization offlaviviruses in the Japanese encephalitis antigenic complex Titre* of antibody to A t Virust JE JE MVE KOK ALF STR SLE USU WN KUN KOU 7 5 4 4 1 1 1 MVE KOK 8 4 5 5 1 1 1 ALF STR 5 7 SLE 1 6 WN KUN KOU 3 5 3 5 2 3 3 1 2 1 4 2 1 1 1 7 2 1 l 2 9 6 1 1 6 9 1 4 4 6 6 10 9 4 USU 3 5 1 1 * See Table 1. t Viruses are designated JE, Japanese encephalitis; MVE, Murray Valley encephalitis; KOK, Kokobera; ALF, Alfuy; STR, Stratford; SLE, St Louis encephalitis; USU, Usutu; WN, West Nile; KUN, Kunjin; KOU, Koutango. Downloaded from www.microbiologyresearch.org by IP: 88.99.165.207 On: Thu, 15 Jun 2017 22:23:38 40 C. H. CALISHER AND OTHERS T a b l e 4. Cross-neutralization of flaviviruses in the Tyuleniy antigenic complex* Titre~ of antibody to ~k Virus:~ TYU TYU SRE MEA 4 SRE MEA 5 5 * Tyuleniy, Saumarez Reef and Meaban viruses were placed in a separate antigenic group because of previous complement fixation test results. t See Table 1. Viruses are designated TYU, Tyu|eniy; SRE, Saumarez Reef; MEA, Meaban. Cross-neutralization of flaviviruses in the Ntaya antigenic complex T a b l e 5. Titre* of antibody to ¢ Virust NTA IT BAG NTA IT BAG YOK KOK TMU 4 2 1 7 5 2 5 YOK 4 KOK TMIJ 1 3 1 8 4 3 3 7 4 5 * See Table 1. t Viruses are designated NTA, Ntaya; IT, Israel turkey meningoencephalitis, BAG, Bagaza; YOK, Yokose; KOK, Kokobera; TMU, Tembusu. T a b l e 6. Cross-neutralization tests with flaviviruses in the Uganda S antigenic complex Titre* of antibody to A Virus:~ UGS BAN BOU 5 3 1 9 4 3 UGS BAN BOU EH EH 1 * See Table 1. t Viruses are designated UGS, Uganda S; BAN, Banzi; BOU, Bouboui, EH, Edge Hill. T a b l e 7. Cross-neutralization tests with flaviviruses in the dengue antigenic complex Titre* of antibody to A r Virus'~ DEN-1 t DEN-2 DEN-3 DEN-4 DEN-1 6 1 DEN-2 DEN-3 DEN-4 6 1 1 7 1 1 $ * See Table 1. ~fDEN-l, dengue 1 virus etc. Downloaded from www.microbiologyresearch.org by IP: 88.99.165.207 On: Thu, 15 Jun 2017 22:23:38 41 Antigenic classification of flaviviruses T a b l e 8. Cross-neutralization tests with flaviviruses in the Modoc antigenic complex Titre* of antibody to t Virus]" MOD SV CR JUT SI~ MOD SV CR JUT SP 9 4 2 3 3 4 9 3 4 1 3 2 5 2 3 2 2 1 2 4 10 9 6 * See Table 1. i" Viruses are designated MOD, Modoc; SV, Sal Vieja; CR, Cowbone Ridge; JUT, Jutiapa; SP, San Perlita. T a b l e 9. Assignment of flaviviruses to antigenic complexes* Antigenic complex Tick-borne encephalitis Rio Bravo Japanese encephalitis Tyuleniy Ntaya Uganda S Dengue Modoc Viruses (Russian spring-summer encephalitis, Central European encephalitis), Omsk haemorrhagic fever, louping ill, Kyasanur Forest disease, (Langat, Phnom Penh bat, Carey Island), Negishi, Powassan, Karshi, Royal Farm Rio Bravo, Entebbe bat, Dakar bat, Bukalasa bat, Saboya, Apoi Japanese encephalitis, Murray Valley encephalitis, Kokobera, Alfuy, Stratford, St Louis encephalitis, Usutu, West Nile, Kunjin, Koutango Tyuleniy, Saumarez Reef, Meaban Ntaya, (Tembusu, Yokose), (Israel turkey meningoencephalitis, Bagaza) Uganda S, Banzi, Bouboui, Edge Hill Dengue 1, dengue 2, dengue 3, dengue 4 Modoc, Cowbone Ridge, Jutiapa, Sal Vieja, San Perlita * Viruses more closely related to each other than to others of the antigenic complex are in parentheses. 32-fold differences in both directions, were not included in these tables; such reactions were considered only to signify membership of the serogroup. Final determinations of antigenic relationships were based on visual inspection of tabulated results, and assignment to a specific antigenic complex was by subjective determination of relatedness in these and other tests (de Madrid & Porterfield, 1974; Varelas-Wesley & Calisher, 1982). Results of these tests allowed the separation of 49 flaviviruses into eight antigenic complexes (Table 9), supporting and extending the findings of de Madrid & Porterfield (1974) and Varelas-Wesley & Calisher (1982). Aroa (Aroa and Bussuquara viruses most closely related to each other by complement fixation tests; J. Casals, cited in American Committee on Arthropod-Borne Viruses, 1985) (homologous antibody titre, 1280), Bussuquara (640), Cacipacore (>/1280), Gadgets Gully (160), Ilheus (640), Jugra (40), Kadam (antibody to Kadam virus neutralized Apoi and Entebbe bat viruses, suggesting membership of Kadam virus in the Rio Bravo complex) (>~640), Montana Myotis leukoencephalitis (Montana Myotis leukoencephalitis and Tamana bat viruses most closely related to each other by haemagglutination inhibition tests; R. E. Shope, unpublished data) (160), Naranjal (320), Rocio (640), Sepik (Sepik and Wesselsbron viruses most closely related to each other by complement fixation and mouse neutralization tests; G. M. Woodroofe, cited in de Madrid & Porterfield, 1974) (640), Sokuluk (5120), Spondweni (640), Tamana bat (160), Wesselsbron (5120), yellow fever (1280) and Zika (2560) viruses could not be assigned to an antigenic complex because they did not cross-react significantly with other flaviviruses. DISCUSSION These tests were performed with only one immune reagent for each virus. Homologous antibody preparations with low titres do not allow detection of weak heterologous reactivity, and Downloaded from www.microbiologyresearch.org by IP: 88.99.165.207 On: Thu, 15 Jun 2017 22:23:38 42 c . H . CALISHER AND OTHERS variation between individual reagents, immunization schedules, host animals, cell culture systems and virus passage levels may influence the sensitivity and specificity of polyclonal antibody preparations. In spite of these drawbacks, a semblance of order between these viruses can be observed. Antigenic complexes approximate the ecological categories of these viruses, as determined by geographical distribution and vertebrate host or arthropod vector association. For example, the flaviviruses may be generally associated with ticks (Tables 1 and 4), bats (Table 2), mosquitoes (Tables 3, 5, 6 and 7) or rodents (Table 8), and even more generally associated with Europe and Asia (Table 1), Africa (Tables 2 and 6), Australia and nearby Asia (Table 3), sea coasts (Table 4) and North America (Table 8). Viruses assigned to the dengue antigenic complex cause clinically indistinguishable illnesses in humans. Although such subdivisions provide data sufficient to devise intriguing evolutionary hypotheses, they may also be considered the result of viruscollecting bias. Tick-borne flaviviruses (Tables 1 and 4) may belong to a single antigenic complex. Complement fixation tests (Chastel et al., 1985) suggest a closer relationship between Tyuleniy, Saumarez Reef and Meaban viruses than between these and other tick-borne flaviviruses, but N tests did not support this observation; we did not compare Meaban virus with any but Tyuleniy and Saumarez Reef viruses. Antigenic relationships between viruses of the dengue antigenic complex are representative of difficulties inherent in taxonomic segregation of flaviviruses. Whereas studies with monoclonal antibodies confirm by immunofluorescence reaction that the dengue viruses form an antigenic complex (Henchal et al., 1983), the data (Table 7) demonstrate a significant lack of cross-neutralization. Alternatively, Edge Hill virus, which our data suggest belongs with the Uganda S complex viruses (Table 6), has been shown not only to share epitopes with the dengue complex viruses (Henchal et al., 1983) but also to have a high degree of RNA homology with dengue 2 virus (Blok et al., 1984). Conflicting data (results not shown) regarding the relationships between Kokobera virus and both the Japanese encephalitis antigenic complex viruses (Table 3) and Israel turkey meningoencephalitis and Tembusu of the Ntaya antigenic complex (Table 5) allude to the presence of epitopes on Kokobera virus common to members of both antigenic complexes; such ambiguity may be due to the possibility that viruses in both sets are simply more distant members of a single, larger complex. Westaway (1966) determined by N tests that Stratford virus is not related to Japanese encephalitis, Murray Valley encephalitis or St Louis encephalitis viruses, and de Madrid & Porterfield (1974) demonstrated a cross-reaction of Stratford virus only with a broadly crossreactive antibody to Murray Valley encephalitis virus; these authors also reported crossreactions between Kokobera and Stratford viruses. In fact, the results of de Madrid & Porterfield (1974) indicated that Kokobera virus is a subtype of Stratford virus. We detected a one-way cross between Kokobera virus (homologous antibody titre, 1280) and Stratford virus (titre of antibody to Kokobera virus with Stratford virus, 160). So too, placement of Carey Island and Phnom Penh bat viruses in the tick-borne encephalitis antigenic complex is tenuous, being based on the neutralization of Langat and Phnom Penh bat viruses by antibody to Carey Island virus. There obviously are no satisfactory solutions in such situations. These apparent inconsistencies can be resolved by tests with additional polyclonal serum samples, with IgM antibodies (Westaway, 1968), by epitopic analyses using monoclonal antibodies and by peptide mapping. Results of tests using such reagents as we used lead to conclusions that must be considered the best available, but not the only ones possible. 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