MODULE TOPIC: Manipulating variables to determine optimal function NAME OF LESSON PLAN: Enzyme Function STANDARD(S) & INDICATOR(S): NGSS MS-LS1-2. Develop and use a model to describe the unction of a cell as a whole and ways parts of cells contribute to the function. CCSS-Mathematics HSF-IF.B.4. For a function that models a relationship between two quantities, interpret key features of graphs and tables in terms of the quantities, and sketch graphs showing key features given a verbal description of the relationship. LEARNING OBJECTIVE(S): Students will be able to: Given a set of key variables, design and conduct an experiment that illustrates the optimal environment for catalase function. MATERIALS: Part 1 Lesson/Note Templates Enzyme /substrate concentration activity (“Toothpick-ase lab”) Toothpicks Part 2 Beakers Thermometers Catalase source (liver) pH solutions (2,4,6,8,10,14) Hydrogen peroxide Hot plates Water Ice Part 3 Graph paper Data Analysis templates Conclusion templates LIST OF HANDOUTS Toothpickase lab “Design an experiment” Template Scoring Rubric BACKGROUND INFORMATION: This lesson is used to place emphasis on using experimental design in order to determine the outcome of combined variables. Using the concept of enzymes as a mechanism, students will gain experience in designing data collection and analysis methods in order to measure specific outcomes. Students have engaged in less extensive versions of this throughout the year, and are expected to operate completely independently during the design, conduct, and analyze phases of this lesson. Being that it is centered on investigation and manipulation of multiple variables on the rate of reaction this lesson mirrors the major takeaway from my experience in the RET program. Prior to this lesson, students were also given a demonstration of the work done during the RET program in which emphasis was placed on experimental design, data collection, and data organization. CLASSROOM ACTIVITY DESCRIPTION (LABORATORY/EXERCISES/PROBLEMS) including detailed procedures: Part 1: Lesson begins with introductory information regarding enzymes. This segment of the course directly follows the unit on molecular transport in which enzymes were mentioned indirectly. Key concepts in the introductory phase will incorporate enzyme/substrate interaction, biological function, environmental requirements, and enzyme/substrate concentration. Students will then engage in the “Toothpickase” activity. During this activity, students blindly break toothpicks in one minute intervals. The number of toothpicks per interval increases exponentially, and students find that, while they can initially break all of the toothpicks, the number of broken picks becomes stagnant at higher concentrations. The activity is done in aim of illustrating the point that the enzyme (their hands) has a productivity ceiling in relation to the enzyme/substrate concentration within the environment. Part 2: Students read pre-lab information regarding the enzyme catalase. Students are given a set of parameters in which to answer the following question: “Which conditions will lead to the highest reaction rate in catalase” The teachers demonstrate that rate is measured in the amount of time it takes for a catalase soaked disc of filter paper to float when placed in hydrogen peroxide. Students are then given a list/demo of materials and are provided with the directive “Design an experiment that will help you answer your question. It is emphasized that, while each group of two will collect data regarding one set of conditions, the class will be working as a whole to determine the efficacy of the conditions as a whole. Students are expected to have developed enough skill in experimental design at this point to incorporate standard techniques such as: Manipulating temperature through water baths, altering concentration, measuring/adjusting pH, and general data recording practices. The experimental/data collection segment of this phase is completely self-developed by the students, however, the teachers make it clear that they are completely available and willing to assist with guidance. Part 3: Students organize, graph, and compare data collected during part 2. Using the class data as a whole, students will communicate and come to a consensus regarding the combined optimal environmental factors for catalase to function in. At the conclusion of this phase, students will provide us with their self-made procedures, data records, and the conclusions gained during their individual experiments. The conclusion/evidence base for the unified functioning range will be communicated verbally by the class as a whole. SAMPLE QUESTIONS TO ELICIT CLASS DISCUSSION: Why does the body stop working if specific (temperature, pH, hydration, etc…) is not maintained? Why is it true to say that knowledge can rarely exist in the absence of experimentation? How does an imbalance in pH impact enzyme reaction rate? How does increase in temperature impact enzyme reaction rate? How does temperature decrease impact enzyme reaction rate AND why is this impact different from the two described above? Would digestion be able to take place without enzymes present? HOMEWORK ACTIVITY/EXERCISES/PROBLEMS: Students are not expected to finish the question portions associated with part 1, part 2, or part 3 of this lesson in class. These questions will be assigned as homework or tutoring session assignments. PARAMETERS TO EVALUATE STUDENT WORK PRODUCTS: Assessment of the design of the experiment illustrating the optimal environment for catalase function. (See rubric) ACKNOWLEDGEMENT This material is based upon work supported by the National Science Foundation under Grant No. 1301071 Copyright © 2016 by the Center for Pre-College Programs, of the New Jersey Institute of Technology. All Rights Reserved. Supporting Program: Center for Pre-College Programs, at the New Jersey Institute of Technology Contributors Owen Ambrose, Montclair High School, Montclair, NJ, Primary Author Howard Kimmel, Levelle Burr-Alexander - Center for pre-College Programs, NJIT. Md Mahbubur Rahman, Dr. Ecevit Bilgili, Dr. Rajesh Dave - C-SOPS, NJIT Catalase Lab Scoring Rubric Group Members names:________________________________________ Score Earned:_____________________________ Area 0 Point Not done 1 Point 3 Points 5 Points 7 Points 10 Points Does not address question or variables Inaccurately reflects question but shows clear thought Accurately reflects question but misses some variables Experiment Not done Did not follow procedure Shows lack of effort in aligning question with procedure Followed procedure poorly Followed procedure with errors Data Not done incomplete Mostly complete Organization Not done Most elements missing Some elements missing Conclusion Not done Fully inaccurate Mostly inaccurate Complete with mistakes Elements present but with many mistakes Partially accurate Followed procedure but lacked understanding of why Complete with few mistakes Accurately reflects question and considers all variables Accurately followed procedure with purpose Perfect Procedure Elements Elements present bit with present few mistakes with no mistakes Mostly Fully Accurate accurate Name _______________________________________ Date ______________ Introduction to Catalase Go to: http://pdb101-test.rcsb.org/teach/tests/enzymes-pre-test Take the pre test use class code DCPT0022 Next read the following and answer these questions. http://pdb101.rcsb.org/motm/57 1. Why is oxygen dangerous? 2. What are riboflavin and niacin? 3. Why is hydrogen peroxide dangerous? 4. Why is it bad if DNA mutates? 5. What two enzymes fight against oxygen damage? 6. How fast does Catalase work? 7. Why is it important that catalase be unusually stable? 8. Explain the 2 steps that catalase does to break up H2O2 (hydrogen peroxide). The Toothpickase Activity Introduction: Organisms on every level, from elephants and blue whales down to amoebas and lowly bacteria, can be described as being simply bags of chemical reactions. If left to their own, most of these reactions would either not happen at all or cause the organism to basically explode. Just as matches won’t light on their own, these reactions need to be helped along so that they can be controlled. Biologists are very interested in enzymes – protein catalysts that control many of the reactions that occur in living organisms. Enzymes are used in all metabolic reactions (and that’s a LOT of reactions) to control the rate of reactions (so you don’t burn up) and decrease the amount of activation energy necessary for the reaction to take place. Enzymes are specific for each reaction and are reusable. Enzymes have an area called the active site to which a specific substrate will bond temporarily while the reaction is taking place. We know that conditions that change the shape of the active site (denaturation) such as heat and pH dramatically change the speed at which the enzyme can work. In this activity, you will actually become an enzyme of sorts (you’re not actually a protein) and cause a reaction to take place. Toothpicks can’t break on their own! More specifically, we will model as a class how changes in substrate concentration (number of toothpicks available) affect reaction rate (number of toothpicks broken per second). Procedure: In this activity, the toothpicks are the substrate and you are now the enzyme toothpickase. When you break a toothpick, the place where the toothpick fits between your fingers is the active site of the enzyme. 1. Each team of two will split the jobs. One student will be the enzyme and you break toothpicks one at a time as fast as you can. The other student will keep count of how many toothpicks get broken. 2. For each trial, each team will count out a pile of toothpicks and then be given 10 seconds to break as many toothpicks from that pile as possible. The person breaking the substrate CANNOT look at the toothpicks. 3. In reality, the products of the reaction do not necessarily go away so we need to model this. BE SURE TO PUT BROKEN TOOTHPICK BACK INTO YOUR PILE AS YOU BREAK THEM 4. Record the data in the table. Name ________________________________ Date _____________________ Data Table: Starting toothpick count Number of toothpicks broken Enzyme rate (t-pix/sec) 1 5 10 20 30 40 Graph your data: Analysis & Conclusions: 1. What do you think your team’s reaction rate would be if given a pile of 1000 toothpicks? 10,000? Explain why. 2. At what substrate concentration (starting toothpick count) did your team’s reaction rate stop increasing? 3. Why is this [the answer to previous question] called the “saturation point”? 4. What happens if the enzymes wore bulky gloves when picking up toothpicks? Explain 5. What does wearing the gloves represent? 6. What would happen to the rate of reaction if the enzymes (your fingers) were soaked in ice water for five minutes before breaking the toothpicks? And as the enzymes warmed up again would the rate eventually return to normal? 7. What if the enzymes (your fingers) were put into boiling water for five minutes (denatured)? Would the reaction rate return to normal after the active site cooled down? Why is this a different result than putting the enzyme in ice water? 8. Which causes a more permanent change in the enzyme, cooling or heating? Conclusion Template Sheet When Writing your conclusion consider the following: How was your question addressed? What form of data was collected? What did the data show? What answer did you arrive at? How does the data work as evidence for that answer? What questions remain even after the experiment? What would you do differently?
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