Mixtures: Comparing approaches in Mixtures: Comparing approaches in epidemiology and toxicology with a discussion of the July 2015 NIEHS Workshop Statistical Approaches for Assessing Health Effects of Environmental Chemical Mixtures in Epidemiology Studies Chemical Mixtures in Epidemiology Studies Thomas F. Webster Th F W bt Boston University School of Public Health [email protected] 13 January 2016 13 January 2016 SOT Joint Mixtures and Risk Assessment Specialty Sections Mixtures are an important issue “Traditionally, toxicological studies and human health risk assessments* have focused primarily on single chemicals. However, people are exposed to a myriad of chemical and nonchemical stressors every day and throughout their lifetime… It is imperative to develop methods to assess the health effects associated with complex exposures in order to minimize their impact on the development of disease.” Carlin DJ, Rider CV, Woychik R, Birnbaum LS. Unraveling the Health Effects of Environmental Mixtures: An NIEHS Priority. Environ Health Perspect 2013; 121: A6-A8. * and environmental epidemiology studies 2 Overview: 1. Review & compare approaches used to study health effects of mixtures: f • Toxicology • Epidemiology p gy 2. Discussion of the July 2015 NIEHS Workshop Statistical Approaches for Assessing Health Effects of Environmental Approaches for Assessing Health Effects of Environmental Chemical Mixtures in Epidemiology Studies I’m assuming most of you are more familiar with toxicology than epidemiology. 3 “Testing just one dose of just the top 1,000 hi h volume high l chemicals h i l i in th three‐way combinations would require 166 million different experiments.” Estabrook & Tickner, 2001 1000 ~ 1.7x108 3 ‐> We probably cannot test out way out of b bl f this problem (“combinatorial explosion”) N.B. There are also non‐chemical exposures 4 Two aspects of the mixtures problem: 1. What are the patterns of co‐exposure in real populations and what do they depend on (e.g., l i d h d h d d ( demographics)? 2. What are the health impacts of mixtures (to p ( which we are exposed)? a toxicology/pharmacology a. toxicology/pharmacology b. epidemiology 5 Two aspects of the mixtures problem: 1. What are the patterns of co‐exposure in real populations and what do they depend on (e.g., l i d h d h d d ( demographics)? Very important role for exposure science 6 Exposure Space A multi‐dimensional representation of exposure Each axes represents an exposure Each point is a person For real populations, large parts of exposure space will be p p , g p p p empty or sparse (not uniformly distributed) • Some exposure are correlated; others are not • • • • B Simple 2D exposure space A 7 Hierarchical Clustering of Serum Concentrations More correlateed One branch = PBDEs O b h PBDE Second branch = other Two groups of PCBs PBDEs PCB‐lower MW PCB‐higher MW 8 What else are we exposed to? (b id what (besides h t we usually ll look l k for) f ) Exposome 9 Exposure science yields important p y p insights by studying real world exposures. exposures e.g., not all possible mixtures occur, co p e pa e s o co e a o s complex patterns of correlations Informs toxicology & epidemiology LOTS to be done here! 10 Two aspects of the mixtures problem: 1. What are the patterns of co‐exposure in real populations and how do they depend on l i dh d h d d demographics, etc? 2. What are the health impacts of mixtures (to p ( which we are exposed)? a toxicology/pharmacology a. toxicology/pharmacology b. epidemiology 11 2a. Toxicology/pharmacology gy p gy i. Whole mixtures Question: If we know the toxicity of a defined mixture (very highly correlated), can we estimate the toxicity of a “similar” a similar mixture? How similar does it need to be? mixture? How similar does it need to be? (e.g., Arochlors) 12 2a. Toxicology/pharmacology gy p gy i. Whole mixtures Question: If we know the toxicity of a defined mixture (very highly correlated), can we estimate the toxicity of a “similar” a similar mixture? How similar does it need to be? mixture? How similar does it need to be? (e.g., Arochlors) ii. Component based Question: Can we predict the combined effect of a mixture from its components plus mechanistic information? reduce combinatorial problem 13 Rephrase: (When & how) can we predict the dose response surface of a mixture from the dose response surface of a mixture from the dose response curves of its components? ? effect A effect A B B Individual dose response curves Joint dose response surface 2D example 14 Main prediction approaches used by mixtures toxicologists based on models of “no toxicologists, based on models of no interaction: interaction:” • Concentration addition (dose addition) ( ) for compounds that act by similar mechanisms • Independent Independent action action for compounds that act by different mechanisms Note: Detailed mechanistic information: may allow predictions Effect summation: not used by most mixtures toxicologists effect A&B = effect A + effect B effect A&B = effect A + effect B 15 Example: Toxic equivalence factors (TEFs): • A special case of concentration addition • Compounds act as if they are a dilute form of a potent reference compound: TEF = relative potency • Dioxin‐like compounds (etc.) p ( ) • Provides a convenient summary measure of exposure T t l ff ti d Total effective dose = TEF TEF1*X1 + TEF TEF2*X2 + … 16 Toxic equivalence factors (TEFs): Assumes same mechanism and “parallel” dose‐response curves (differing only in potency: shape & efficacy must be the same) Individual components Silva et al Silva et al 17 Toxic equivalence factors (TEFs): Assumes same mechanism and “parallel” dose‐response curves (differing only in potency: shape & efficacy must be the same) Individual components TEF model fits empirical mixture data TEF model fits empirical mixture data well compared with 2 other models Silva et al Silva et al CA=concentration addition IA=independent action ES=effect summation 18 Summary: Component‐based toxicology approach • Select compounds & doses for mixture • Predict joint response from individual components effect effect A A B B Individual dose response curves Joint dose response surface 2D example 19 Two aspects of the mixtures problem: 1. What are the patterns of co‐exposure in real populations and what do they depend l l i d h d h d d on (e.g., demographics)? 2. What are the health impacts of mixtures (to p ( which we are exposed)? a toxicology/pharmacology a. toxicology/pharmacology b. epidemiology 20 In some ways, epidemiologists have the opposite (complementary) problem of toxicologists: Epidemiologists d l • study real world mixtures ( (vs. toxicologists & the huge number of possible mixtures to test) g g p ) Exposure space & outcome data B A 21 In some ways, epidemiologists have the opposite (complementary) problem of toxicologists: Epidemiologists d l • study real world mixtures ( (vs. toxicologists & the huge number of possible mixtures to test) g g p ) • estimate response surfaces directly from data (vs. estimating it from dose‐response curves of components) Estimate response surface Exposure space & outcome data B effect A B A 22 Use of regression to estimate response surfaces from epi data: Very‐simple (2D) example using a traditional approach Outcome & exposure data for each individual: (Yi, X1i, X2i) Yi 0 1 X1i 2 X 2i 12 X1i X 2i i outcome Individual effects of exposures X1, X2 multiplicative multiplicative interaction of X1, X2 error term error term Regression uses data from individual people (i) to estimate the parameters β0, β1, β2, β12 23 Some mixtures questions for epidemiologists 1. Variable selection: Which components of a mixture are important? 1 V i bl l ti Whi h t f i t i t t? Challenges: • Incomplete data on all relevant exposures • Multiple comparisons • Co‐pollutant confounding 24 Some mixtures questions for epidemiologists 1. Variable selection: Which components of a mixture are important? 1 V i bl l ti Whi h t f i t i t t? 2. Are there “interactions?” “Additivity” vs. “interaction” (e.g., synergy, antagonism) between multiple pollutants Challenges: Toxicologists, epidemiologists and statisticians do not mean mean • Toxicologists, epidemiologists and statisticians do not the same thing by additive, interaction, synergy, antagonism. • Difficult to examine without data spread across exposure space e g people with no exposure to either exposure to space, e.g., people with no exposure to either, exposure to one, exposure to both • Selection of agents to be examined & the many possible interactions 25 Some mixtures questions for epidemiologists 1. V 1 Variable selection: Which components of a mixture are important? i bl l ti Whi h t f i t i t t? 2. Are there “interactions?” 3. Cumulative effect: Quantify the net effect of groups of compounds using a summary measure (e.g., TEFs) Challenges: Difficult to create summary measure: lack of biological • Difficult to create summary measure: lack of biological knowledge, different mechanisms, etc. • Simply adding exposures is driven by highest concentration exposure 26 Some difficulties for epidemiologists studying mixtures: • Obtaining good exposure data at relevant time windows ‐ important problem; use of biospecimens important problem use of biospecimens can sometimes help can sometimes help ‐ analytical chemistry methods ‐ cost, volume of samples (e.g., blood), logistics ‐ short half‐life compounds short half‐life compounds ‐ non‐chemical exposure 27 Some difficulties for epidemiologists studying mixtures: • Obtaining good exposure data at relevant time windows ‐ important problem; use of biospecimens important problem use of biospecimens can sometimes help can sometimes help ‐ analytical chemistry methods ‐ cost, volume of samples (e.g., blood), logistics ‐ short half‐life compounds short half‐life compounds ‐ non‐chemical exposure • Cannot control exposure distribution except by selection of the population ‐ some exposures will be difficult to disentangle ‐ studying “interactions” needs different exposure combinations 28 Some difficulties for epidemiologists studying mixtures: • Obtaining good exposure data at relevant time windows ‐ important problem; use of biospecimens important problem use of biospecimens can sometimes help can sometimes help ‐ analytical chemistry methods ‐ cost, volume of samples (e.g., blood), logistics ‐ short half‐life compounds short half‐life compounds ‐ non‐chemical exposure • Cannot control exposure distribution except by selection of the population ‐ some exposures will be difficult to disentangle ‐ studying “interactions” needs different exposure combinations • Sample size Sample size 29 Some difficulties for epidemiologists studying mixtures: • Obtaining good exposure data at relevant time windows ‐ important problem; use of biospecimens important problem use of biospecimens can sometimes help can sometimes help ‐ analytical chemistry methods ‐ cost, volume of samples (e.g., blood), logistics ‐ short half‐life compounds short half‐life compounds ‐ non‐chemical exposure • Cannot control exposure distribution except by selection of the population ‐ some exposures will be difficult to disentangle ‐ studying “interactions” needs different exposure combinations • Sample size Sample size • Possible confounding & other biases, e.g. ‐ hard but what epidemiologists are trained to do ‐ possibility of reverse causation with exposure biomarkers possibility of reverse causation with exposure biomarkers ‐ confounding by correlated exposures 30 confounding by correlated exposures Suppose: A & B are highly correlated in a mixture (e.g., by common source U) A causes the health outcome (Y), but B causes the health outcome (Y) but B does not does not B Y U A Reality 31 confounding by correlated exposures Suppose: A & B are highly correlated in a mixture (e.g., by common source U) A causes the health outcome (Y), but B causes the health outcome (Y) but B does not does not Then: If we only measure B, it will be associated with the health outcome It may be difficult to separate the effects of A ff ff f & B B U A Reality Y B Y Appearance (if we only measure B) 32 Some difficulties for epidemiologists studying mixtures: • Obtaining good exposure data at relevant time windows ‐ important problem; use of biospecimens important problem use of biospecimens can sometimes help can sometimes help ‐ analytical chemistry methods ‐ cost, volume of samples (e.g., blood), logistics ‐ short half‐life compounds short half‐life compounds ‐ non‐chemical exposure • Cannot control exposure distribution except by selection of the population ‐ some exposures will be difficult to disentangle ‐ studying “interactions” needs different exposure combinations • Sample size Sample size • Possible confounding & other biases, e.g. ‐ hard but what epidemiologists are trained to do ‐ possibility of reverse causation with exposure biomarkers possibility of reverse causation with exposure biomarkers ‐ confounding by correlated exposures • Statistical issues, e.g. ‐ highly correlated exposures hi hl l t d ‐ multiple comparisons ‐ lack of standard methods 33 Use of regression to estimate response surfaces: very‐simple (2D) example Yi 0 1 X1i 2 X 2i 12 X1i X 2i ' Z i outcome Individual effects of exposures X1, X2 error term multiplicative control interaction confounders of X1, X2 Some potential problems with this model and its assumptions: • continuous Y 34 Use of regression to estimate response surfaces: very‐simple (2D) example Yi 0 1 X1i 2 X 2i 12 X1i X 2i ' Z i outcome Individual effects of exposures X1, X2 error term multiplicative control interaction confounders of X1, X2 Some potential problems with this model and its assumptions: • continuous Y • linear relationship of outcome to exposures 35 Use of regression to estimate response surfaces: very‐simple (2D) example Yi 0 1 X1i 2 X 2i 12 X1i X 2i ' Z i outcome Individual effects of exposures X1, X2 error term multiplicative control interaction confounders of X1, X2 Some potential problems with this model and its assumptions: • continuous Y • linear relationship of outcome to exposures • multiplicative interaction term 36 Use of regression to estimate response surfaces: very‐simple (2D) example Yi 0 1 X1i 2 X 2i 12 X1i X 2i ' Z i outcome Individual effects of exposures X1, X2 error term multiplicative control interaction confounders of X1, X2 Some potential problems with this model and its assumptions: • continuous Y • linear relationship of outcome to exposures • multiplicative interaction term • won won’tt work well if exposures are highly correlated (colinearity) work well if exposures are highly correlated (colinearity) • even this simple model requires a fair amount of data and some spread across exposure space • becomes more difficult with more exposure variables (variable ( selection), non‐linear models, etc. 37 September 26-27, 2011 Chapel Hill, NC ““Another area that requires collaboration is the development off better statistical methods for assessing the effects of multipollutant exposures p in epidemiological p g studies. Overall,, mixtures studies require novel and sophisticated mathematical, statistical, computational, and analytical tools, which will be dependent on continuous collaboration among the various disciplines. disciplines ” Carlin et al. 2013 38 39 Goals and Approach of the Workshop Workshop Goals: • Identify and compare different approaches and methods for analysis of mixtures data • Foster collaborations between workshop participants • Inform the development of a long term coordinated NIEHS mixtures research program Workshop Structure: Data Challenge • • • • 3 datasets used by all participants Participants analyzed data prior to workshop Short presentations at meeting Panel discussion of strengths and limitations Include expertise in biostatistics, epidemiology, toxicology, exposure science and risk assessment 40 Simulated data sets (answers known by organizing committee, but not participants) Simulated Data Set #1 Simulated Data Set #2 Data per subject: p j Data per subject: p j N=500 Y = 1 continuous outcome variable 7 continuous exposure variables 1 binary confounder N=500 Y = 1 continuous outcome variable 14 continuous exposure variables 3 covariates (binary, continuous) Simulated data sets (answers known to organizing committee, but not participants) Simulated Data Set #1 Simulated Data Set #2 Data per subject: p j Data per subject: p j N=500 Y = 1 continuous outcome variable 7 continuous exposure variables 1 binary confounder N=500 Y = 1 continuous outcome variable 14 continuous exposure variables 3 covariates (binary, continuous) Key Features/Challenges: Key Features/Challenges: • High correlation between some exposures (based on real serum data) • Biologically based model: non‐linear associations with outcome associations with outcome • Toxicologic interactions • Different directions of effect o g co ou d g by • SStrong confounding by Z • Small amount of random noise • High High correlation between some correlation between some exposures (based on real serum data) • Linear associations between outcome & p exposures • No interactions between exposures • Same direction of effect • Strong modification by one covariate • Moderate amount of random noise Real World Dataset (real epidemiologic data “warts (real epidemiologic data, warts & all & all”, simplified) simplified) Features of dataset : • Prospective cohort of mothers and children (n=270) • Y = Mental Development Index (MDI) at 1‐3 years of age • Xs = serum levels of 14 PCBs, 4 PBDEs, 4 organochlorine pesticides l l f hl i i id • Zs = Child sex, mom age, education, race, and smoking during pregnancy Key findings from single‐exposure analyses: • Chemicals within a given class more correlated than across classes • Several PBDEs associated with decreased MDI • Several PCBs associated with increased MDI 43 Questions Addressed by Participants for Data Sets • Which exposures contribute to the outcome? Are there any that do not? (Qualitative) h d ? (Q li i ) • Which exposures contributed to the outcome and by how much? (Quantitative) • Is there evidence of “interaction”* or not? • What is the effect of joint exposure to the mixture? (Qualitative) • What is the joint dose‐response function? * state definition of interaction you used 44 Response and Types of Methods Used • Received 31 abstracts • Many different approaches, for example: Many different approaches, for example: Exposure–Response Surface Estimation Strategies Bayesian Kernel Machine Regression (BKMR) Bayesian Kernel Machine Regression (BKMR) Exposure Space Smoothing (ESS) Bayesian Additive Regression Tree (BART) Variable Selection Strategies Variable Selection Strategies Shrinkage (LASSO/LARS) Weighted Quantile Sum (WQS) Regression Bayesian Estimation of Weighted Sum Classification and Prediction Strategies Principal Component Analysis (PCA) Variable Selection and Multivariate Adaptive Regression p g Splines p ((MARS)) Classification and Regression Trees (CART) 45 Examples of methods Yi 0 1 X1i 2 X 2i 12 X1i X 2i ' Z i outcome Individual effects of exposures X1, X2 error term multiplicative control multiplicative interaction confounders of X1, X2 g(Y )i 0 f (X1,..., X p ) ' Z i smooth function of exposures flexible interaction 2 exposure 2 exposure–response response surface estimation strategies surface estimation strategies • Bayesian Kernel Machine Regression (BKMR) • Exposure Surface Smoothing (ESS) Y X1 X2 Observations on Model Performance Across Datasets Question Simulated Dataset #1 Simulated Dataset #2 Real‐world Dataset† Identified correct exposures? Most Many (for subset of X) NA Identified correct Identified correct direction of X‐Y associations? Most Most Identified correct f interactions?* Some Some Estimated joint Estimated joint exposure effect? Few Few NA NA NA *Interaction with other X (dataset 1) or covariate Z3 (dataset 2) † Correct answer not known. 47 Real world data set Real world data set • A number of methods identified PBDE congeners (inverse association) and PCB congeners (positive association). • Sensitivity of results to pre‐treatment of data (e.g., influential points 48 Key Observations/Recommendations • Many approaches are available: – Relatively easy to implement (e.g., using R packages) • Comparison across methods is difficult outside the context of i h d i diffi l id h f a specific mixtures question • Results varied across methods depending on the properties of the data sets; there did not appear to be any clear overall winner • Variable selection/reduction is important • Some limitations of the data (sample size, co‐pollutant correlation, missing exposures) cannot be solved with statistical models alone • Need greater integration of toxicological and exposure science information 49 Next Steps, Tentative Plans • • • • • • Continuing analysis of results of workshop Commentary and review articles underway Mixtures “portal” Future “Data Challenges” Consortium & other collaborative efforts Statistical methods development still needed 50 Please visit the workshop website for access to: • Simulated datasets • Abstracts • Statistical code http://www.niehs.nih.gov/about/visiting/events/ pastmtg/2015/statistical/index cfm pastmtg/2015/statistical/index.cfm 51 Summary: • Exposure science, toxicology and epidemiology can provide complementary information for understanding mixtures. • These three fields have different definitions of interaction. • New methods are being developed for analyzing health effects of mixtures in epidemiology. effects of mixtures in epidemiology. • Successful workshop with a unusual format that generated great interest and enthusiasm. 52 Workshop Planning Committee Joe Braun, Danielle Carlin, Jennifer Collins, Caroline Dilworth, Chris Gennings, Kim Gray, Russ Hauser, Jerry Heindel, Heather Henry, Bonnie Joubert, Helena Kennedy, Richard Kwok, Andreas K Kortenkamp, Katie Pelch, Cynthia Rider, Thad Shug, k K i P l h C hi Rid Th d Sh Kyla Taylor, Claudia Thompson, Bill Suk, Tom Webster Other Acknowledgements • Participants in workshop • SOT Mixtures Specialty Session • Superfund Research Program 53 Suggested Further Reading • Howard GJ, Webster TF. Contrasting Theories of Interaction in Epidemiology and Toxicology. Environ Health Perspect 2013; 121:1–6. • Braun JM, Gennings C, Hauser R, Webster TF. What can Epidemiological Studies Tell Us about the Impact of Chemical Epidemiological Studies Tell Us about the Impact of Chemical Mixtures on Human Health? Environ Health Perspect 2016; 124: A6‐9. • Future publications coming out of the NIEHS workshop Future publications coming out of the NIEHS workshop 54 Is the combination of A and B “synergistic?” outcom me 0.35 0.3 0.25 0.2 0.15 0.1 0.05 0 Control A B A&B If you’re an epidemiologist, think of the outcome as a risk (with no confounding or bias) 56 Is the combination of A and B “synergistic?” outcom me 0.35 0.3 0.25 0.2 0.15 0.1 0.05 0 Control A B Answer: • Epidemiology: Yes E id i l Y • Mixtures toxicologist: Can’t tell without more information A&B Why? 57 Toxicology/pharmacology & Epidemiology agree on one thing Evaluating synergy and antagonism crucially depends on the a uat g sy e gy a d a tago s c uc a y depe ds o t e definition of no interaction (“additivity”) synergy (greater than expected) No interaction (expected under definition of no interaction) antagonism (less than expected) 58 Toxicologists, epidemiologists (and statisticians) h have different definitions of non‐interaction ff f f (“additive”). • Th They therefore judge synergy & antagonism using different th f j d & t i i diff t criteria. • Definitions cannot be right or wrong. The real question is whether they are useful. • Need to specify the definition you are using. Is the combination of A and B “synergistic?” 0 0.35 35 outcome 0.3 0 25 0.25 0.2 0.15 0.1 0.05 0 Control A B R00 R01 R10 In epidemiology: A&B R11 synergy, because (R11-R00)>(R10-R00)+(R01-R00) effect A&B > effect A + effect B 60 Is the combination of A and B “synergistic?” 0 0.35 35 outcome 0.3 0 25 0.25 0.2 0.15 0.1 0.05 0 Control A B R00 R01 R10 In epidemiology: A&B R11 synergy, because (R11-R00)>(R10-R00)+(R01-R00) effect A&B > effect A + effect B • • Equivalent to effect summation in toxicology, generally not used by mixtures toxicologists 61 Derived from non-interaction of causes So why do toxicology and epidemiology give y gy p gy g different answers here? • Epidemiology: Look at the sum of the effects • Toxicology: Additional information: Suppose that A and B obey TEFs. Look at the the sum of the doses (weighted by TEF ) TEFs). • These give different results when dose‐response curves are non‐linear (N.B. Toxicologists have a few definitions of no interaction, depending on mechanism). Linear dose‐response curve • A and B have TEFs: can be shown on the same dose‐response curve • the incremental effect of B the incremental effect of B does NOT depend on A does NOT depend on A (epidemiology: (epidemiolog “causal independence”) N interaction. No i t ti A B Consequence: q • TEF result = effect summation • Epidemiology & toxicology agree: no interaction Non‐linear dose response curve the incremental effect of B the incremental effect of B depends on A depends on A (epidemiology: (epidemiology: “causal causal interdependence”) TEF Nonlinear DRC Effect summation A B Consequence: • TEFs predicts larger effect than effect summation TEFs predicts larger effect than effect summation • Epidemiology: interaction • Toxicology: no interaction WARNING Use of the following words—interaction, additive, synergy, antagonism—may lead to severe confusion. Avoid with alcohol. alcohol Casual use of these words by graduate students in a qualifying exam is particularly hazardous: make sure you know the field of the person asking ki the h question, i as toxicologists, i l i epidemiologists id i l i and d statisticians do not mean the same thing by these terms.
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