Supplemental Table 2. The list of 100 SSR markers used for genetic diversity analysis.
Sr
No.
Marker Name
1
AM103
2
AM83
3
RM242
4
RM26
5
RM6883
6
RM208
7
RM134
8
RM254
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
RM292
BARC144
GWM174
GWM654
GWM16
WMC-75.1300
PMM121
PMM096-175
PMM117
PMM013
PMM029
PMM014
PVCA1763-64
PVCA1761-62
PVCA1751-52
PVCA1737-38
25
PVCA1717-18
26
27
28
29
30
31
32
33
34
PVCA1525-26
PVCA1513-14
PVCA1431-32
PVCA1429-30
PVCA1822-12
PVCA1263-64
PVCA1217-18
PVCA1181-82
PVCA993-94
35
PVCA989-90
36
PVCA751-52
37
38
39
40
41
PVCA733-34
PVCA497-98
PVCA445-446
PVCA407-08
PVCA401-402
Allele size (bp)
1400, 1200, 1000, 916, 700, 450, 400, 350, 300, 250, 200,
150, 100, 75
600, 575, 550
1300, 1200, 1100, 1000, 800, 766, 700, 650, 600,
500, 400, 350, 300, , 275, 250, 200, 150, 125, 75
850, 750, 725, 650, 600, 575, 525, 475, 450, 425,
375, 325, 300, 275, 265, 250, 225, 175
1100, 550, 450, 400, 350, 200, 150, 100, 75
1100, 800, 700, 650, 600, 550, 500, 450, 375, 350,
325, 300, 250, 200, 150, 125, 100, 75
200
1200, 800, 650, 550, 500, 425, 400, 350, 250, 200,
150, 125, 100, 75, 60, 50, 40
800, 450, 300, 200, 150, 125
450,300,250,200
1200, 916, 700, 650, 500, 450, 350, 250, 200, 150, 100, 75
1300, 700, 500, 350, 2502, 200, 175, 150, 125, 75
400, 375, 300, 225, 200, 75
1300, 900, 600, 625, 500, 425, 375, 325, 300, 200, 125, 75
225, 200
175
800, 600, 500, 300, 225
600, 450
1000, 700, 650, 500, 350, 300, 150
200, 250, 150, 100
500, 450, 100
500, 400, 100
750, 400, 375, 175, 100
600, 350, 200, 125
1000, 900, 700, 600, 500, 450, 400, 350, 325, 350,
225, 200, 175, 150, 125, 100
1200, 500, 450, 400, 350, 325, 300, 250, 175, 100
1100, 650, 250, 200, 100
650, 500, 140, 50
1000, 950, 550, 200, 100, 75, 50
375, 225, 125, 75
1300, 700, 550, 500, 400, 350, 250, 125, 100, 75, 50
300, 225, 200, 150, 125, 75
500, 450, 400, 350, 300, 200,
400, 300, 250, 225, 175, 150, 100, 75
1000, 800, 700, 650, 550, 525, 500, 450, 400, 375, 350,
325, 300, 250, 225, 150, 125, 75, 50
925, 900, 750, 700, 600, 500, 450, 400, 300, 225, 200,
150, 100, 75
900, 750, 700, 450, 275, 100, 75, 65, 50
400, 350, 250, 125, 100
600, 350, 300, 200, 125
450
400, 350, 300, 200, 125
1
Number of
amplified
alleles
Resolving
power
14
7.49
3
0.64
20
5.03
18
14.99
9
1.71
18
2.00
1
1.71
17
9.08
6
4
12
10
6
12
2
1
5
2
7
4
3
3
5
4
0.26
0.29
2.33
3.23
3.65
5.27
3.58
1.98
6.46
3.82
6.20
4.86
0.11
0.15
0.15
0.15
17
1.52
10
5
4
7
4
11
6
6
8
6.26
3.58
0.31
1.01
0.64
1.54
1.65
0.15
2.53
20
4.22
15
5.65
9
5
5
1
5
2.55
3.16
1.80
0.48
0.22
42
43
44
45
PVCA1647-48
PVCA215-16
PVCA201-202
PVCA155-56
46
PVCA139-40
47
48
49
50
51
52
53
54
55
56
PVCA137-38
PVCA255-56
PVCA343-44
PVCA1147-48
PVCA735-36
PVCA1535-36
PVCA1119-20
PVCA1107-08
PVCA1091-92
PVCA47-48
57
PVCA1801-02
58
PVCA1799-1800
59
PVCA1659-60
60
PVCA1563-64
61
PVCA1703-04
62
PVCA1701-02
63
PVCA1687-88
64
PVCA1257-58
65
PVCA1679-80
66
PVCA21-22
67
68
PVCA57-58
PVCA167-68
69
PVCA285-86
70
PVCA299-300
71
PVCA429-30
72
PVCA461-62
73
PVCA1143-44
74
PVCA1259-60
75
PVCA639-40
76
PVCA687-88
77
PVCA183-184
1200, 915, 650, 600, 550, 400, 325, 250, 200, 125,
525, 500, 400, 100, 75
725, 700, 350, 300, 225, 200, 150, 75
175, 150, 100
1400, 100, 800, 650, 550, 500, 400, 325, 250, 200, 150,
125,
1000, 700, 450, 300, 250, 225, 175, 150
1300, 700, 550, 500, 350, 250, 200, 175, 150, 100, 75
800, 600, 275, 250, 175, 150, 100
750, 500, 400, 325, 300, 250, 125,
700, 500, 400, 275, 150, 100, 75, 50
450, 375, 325, 300, 275, 200, 150, 125, 75, 50
300,275,225,200,150
1000, 600, 400, 250, 200, 150, 125, 75
300, 15, 75
1300, 700, 550, 450, 400, 250, 200, 75, 50
925, 916, 700, 750, 600, 550, 500, 400, 325, 300, 275,
250, 200, 175, 135, 120, 100, 75
700, 600, 450, 425, 400, 300, 235, 250, 225, 200, 175,
150, 125, 75
600, 450, 350, 325, 300, 225, 150
1000, 900, 750, 700, 650, 600, 550, 450, 425, 350, 300,
290, 275, 250, 225, 200, 175, 100, 75, 50
1300, 925, 915, 900, 800, 600, 500, 450, 400, 350, 300,
250, 175, 150, 125, 75, 50
900, 600, 500, 450, 400, 350, 325, 300, 250, 225, 200,
175, 125, 75, 65, 50
1200, 1000, 800, 650, 625, 500, 425, 400, 350, 325, 300,
275, 250, 200, 175, 150, 100, 75, 50
1300, 1200, 650, 600, 500, 450, 400, 325, 245, 225, 160,
135, 125
1300, 1200, 800, 750, 600, 500, 450, 400, 250, 200, 175,
125,
1400, 1300, 1100, 1000, 900, 765 , 650, 600, 575, 425,
350, 300, 300 , 250, 225, 200, 175, 150, 125, 100, 75
500, 475, 450, 225, 150, 125, 115, 100, 75,
1400, 1200, 550, 450, 400, 350, 250, 200, 150, 75
765, 650, 550, 450, 400, 325, 300, 275, 250, 225,
200, 175, 150, 135
765, 700, 500, 450, 400, 135
915, 900, 700, 550, 500, 450, 400, 350, 300, 250,
200, 150, 135, 125, 110, 90, 75, 60
1000, 650, 500, 450, 400, 350, 300, 225, 175, 160,
150, 100, 75, 60
450, 275, 225, 175, 150, 100, 75
1300, 800, 765, 700, 600, 550, 450, 400, 350, 300,
250, 200, 175, 150, 135, 100, 75
915, 700, 600, 550, 500, 450, 425, 400, 325, 300,
250, 225, 200, 160, 150, 125, 100, 75
1300, 900, 800, 700, 550, 475, 450, 400, 300, 275,
225, 175, 125, 75, 50
1300, 1200, 1100, 1000, 915, 765, 700, 650, 600,
500, 400, 375, 350, 325, 300, 275, 250, 225, 200,
150, 125,100, 50, 40
2
10
5
8
3
4.31
0.31
1.23
5.76
12
3.21
8
13
7
7
8
10
5
8
3
9
1.74
1.05
1.10
1.58
2.53
6.22
4.44
1.01
2.13
1.78
18
5.54
14
9.32
7
1.25
20
4.70
17
4.24
15
5.91
19
8.55
13
8.15
12
3.98
21
17.05
9
11
3.08
12.13
14
8.75
6
1.36
18
4.46
14
7.54
7
2.40
17
6.95
18
8.97
15
7.45
24
8.79
78
PVCA191-192
79
PVCA199-200
80
PVCA951-52
81
PVCA1017-18
82
PVCA1055-56
83
PVCA1105-06
84
PVCA1221-22
85
PVCA1267-68
86
PVCA1279-80
87
PVCA1387-88
88
PVCA1421-22
89
PVCA1449-50
90
PVCA1477-78
91
PVCA1479-80
92
PVCA1489-90
93
PVCA1555-56
94
PVCA1565-66
95
PVCA1571-72
96
PVCA1573-74
97
PVCA1579-80
1200, 1100, 1000, 915, 850, 800, 765, 600, 550, 500,
400, 350, 300, 270, 200, 150, 125, 100, 90, 80, 70,
60, 50,
1400, 1300, 1200, 1100, 1000, 965, 800, 700, 600,
550, 500, 475, 425, 400, 375, 350, 300, 250, 240,
225, 200, 175, 150, 140, 120, 100, 90, 75, 35
1200, 1100, 1000, 900, 800, 765, 700, 650, 600, 550,
470, 375, 350, 300, 275, 250, 235, 150, 125, 100, 75,
50, 40
1200, 1100, 1000, 915, 850, 765, 650, 550, 525, 500,
475, 400, 325, 275, 250, 220, 200, 175, 150, 135, 100,
75, 50, 40
100, 915, 850, 750, 700, 600, 550, 450, 425, 375, 350,
300, 250, 225, 200, 180, 160, 140, 130, 120, 90, 75,
50, 40
1100, 700, 650, 600, 550, 500, 450, 400, 375, 350,
275, 240, 220, 180, 150, 120, 75, 50, 40
1100, 1000, 765, 700, 550, 500, 400, 350, 300, 275,
250, 220, 200, 170, 150, 120, 100, 75, 50, 40
1500, 1400, 1300, 1100, 950, 900, 800, 750, 700,
600, 550, 390, 350, 300, 220, 190, 170, 150, 125,
110, 75, 60, 40
1400, 1300, 1200, 1100, 1000, 900, 800, 750, 675,
600, 550, 500, 400, 375, 350, 325, 250, 220, 200,
150, 125, 100, 75, 50, 40
1500, 700, 650, 500, 375, 350, 300, 250, 225, 175,
150, 140, 120, 100, 75, 60, 40
1300, 915, 700, 650, 500, 450, 400, 350, 325, 300,
240, 200, 170, 130, 110, 90, 80, 60, 40
915, 765, 525, 500, 425, 375, 350, 320, 300, 270,
250, 230, 210, 200, 190, 180, 140, 90, 75, 50
1500, 1400, 1000, 800, 750, 650, 600, 550, 500, 450,
400, 370, 350, 330, 300, 270, 250, 190, 170, 150, 140,
120, 90, 75, 60
1500,1400, 915, 850, 700, 650, 600, 550, 500, 450,
400, 360, 325, 300, 250, 200, 170, 150, 110, 100,
75, 50
1500, 1400, 1300, 1000, 915, 700, 650, 600, 550, 500,
450, 400, 350, 325, 275, 240, 220, 180, 160, 150,
120, 100, 75, 60
765, 700, 650, 600, 550, 500, 450, 400, 385, 320,
300, 260, 250, 240, 220, 200, 180, 160, 140, 130,
120, 110, 95, 75, 50
1300, 1200, 1000, 800, 700, 550, 500, 475, 425, 360,
325, 300, 270, 240, 220, 200, 180, 160, 140, 100,
90, 75, 60
1300, 1200, 1100, 915, 850, 800, 760, 650, 625, 550,
500, 450, 400, 350, 320, 250, 230, 200, 180, 150,
120, 100, 90, 75, 60
1100, 1000, 950, 900, 765, 700, 650, 600, 550, 500,
450, 400, 360, 300, 270, 240, 220, 190, 160, 130,
110, 90, 75, 50, 40
1100, 900, 800, 765, 700, 650, 580, 525, 450, 400,
375, 350, 290, 275, 250, 220, 180, 160, 150, 140,
120, 100, 90, 75, 60, 40
3
23
11.74
29
20.79
23
8.59
24
8.99
24
12.81
19
4.15
20
9.19
23
4.73
25
10.73
17
16.15
19
2.07
20
4.02
25
11.91
25
3.85
24
7.19
25
18.26
24
23.08
26
10.44
25
10.00
26
12.24
1100, 1000, 900, 800, 700, 600, 500, 450, 400, 350,
320, 260, 250, 220, 210, 175, 160, 150, 130, 110,
100, 90, 75, 60, 50
1300, 1100, 900, 850, 700, 600, 520, 500, 450, 400,
99
PVCA1651-52
350, 320, 300, 280, 240, 180, 150, 120, 100, 75, 60,
50
1100, 750, 700, 600, 500, 450, 420, 400, 340, 310,
100 PVCA1731-32
290, 260, 250, 200, 180, 150, 140, 120, 100, 75, 50,
40
Marker 1 – 14 from Hu et al. (2009); Marker 15 - 20 from Cho et al. (2010); Marker 21 –
(2014).
98
PVCA1649-50
4
25
7.93
22
8.64
22
13.87
100 from Rajput et al.