doi:10.1093/brain/awv394 BRAIN 2016: 139; 829–844 | 829 Mapping neuroplastic potential in brain-damaged patients Guillaume Herbet,1,2 Maxime Maheu,3,4 Emanuele Costi,5 Gilles Lafargue6 and Hugues Duffau1,2 It is increasingly acknowledged that the brain is highly plastic. However, the anatomic factors governing the potential for neuroplasticity have hardly been investigated. To bridge this knowledge gap, we generated a probabilistic atlas of functional plasticity derived from both anatomic magnetic resonance imaging results and intraoperative mapping data on 231 patients having undergone surgery for diffuse, low-grade glioma. The atlas includes detailed level of confidence information and is supplemented with a series of comprehensive, connectivity-based cluster analyses. Our results show that cortical plasticity is generally high in the cortex (except in primary unimodal areas and in a small set of neural hubs) and rather low in connective tracts (especially associative and projection tracts). The atlas sheds new light on the topological organization of critical neural systems and may also be useful in predicting the likelihood of recovery (as a function of lesion topology) in various neuropathological conditions—a crucial factor in improving the care of brain-damaged patients. 1 Department of Neurosurgery, Gui de Chauliac Hospital, Montpellier University Medical Center, F-34295 Montpellier, France 2 Institute for Neuroscience of Montpellier, INSERM U1051 (Plasticity of Central Nervous System, Human Stem Cells and Glial Tumors research group), Saint Eloi Hospital, Montpellier University Medical Center, F-34091 Montpellier, France 3 Départements d’Etudes Cognitives, Ecole Normale Supérieure, F-75005 Paris, France 4 Faculté des Sciences Fondamentales et Biomédicales, Université Paris Descartes, F-75006 Paris, France 5 Department of Neuroscience, Division of Neurosurgery, University of Brescia, Brescia, Italy 6 Univ. Lille, EA 4072 – PSITEC – Psychologie: Interactions, Temps, Émotions, Cognition, F-59000 Lille, France Correspondence to: Guillaume Herbet Gui de Chauliac Hospital, Montpellier University Medical Center 80, avenue Augustin Fliche F-34296 Montpellier, France E-mail: [email protected] Keywords: neuroplasticity; white matter connectivity; electrostimulation mapping; glioma; brain injury Abbreviations: FLAIR = fluid-attenuated inversion recovery; IFOF = inferior-fronto-occipital fasciculus; ILF = inferior longitudinal fasciculus; SLF = superior longitudinal fasciculus Introduction Progressive or sudden damage to the brain poses substantial functional problems. Faced with a dramatic loss of neural tissue, the brain must reallocate the remaining physiological resources to maintain a satisfactory level of function in a cognitively and socially demanding environment. In fact, the brain is capable of meeting this type of challenge under many neuropathological circumstances, and can successfully circumvent (at least in part) the expected functional consequences of structural damage (Duffau et al., 2005a). These highly adaptive processes exemplify the brain’s ability to re-establish normal function (Rudrauf, 2014). The mechanisms of active functional Received July 10, 2015. Revised November 6, 2015. Accepted November 24, 2015. Advance Access publication February 8, 2016 ß The Author (2016). Published by Oxford University Press on behalf of the Guarantors of Brain. All rights reserved. For Permissions, please email: [email protected] 830 | BRAIN 2016: 139; 829–844 compensation are enabled by the nature of the brain’s intrinsic anatomy, which is dynamically organized into highly distributed, parallel neural networks (van den Heuvel and Sporns, 2013) (some of which may be latent or redundant) (Duffau, 2000). Although there are a few literature reports on exceptional cases of functional recovery or adaptation in various neurological contexts (Schumacher et al., 1987; Feuillet et al., 2007; Philippi et al., 2012; Feinstein et al., 2015), the most persuasive body of evidence for the brain’s astonishing, lesion-induced plasticity comes from the field of neurosurgery in general and the resection of diffuse, low-grade glioma in particular. Indeed, it has been shown that the surgical removal of large brain areas (including cortical areas thought to act as critical cornerstones within largescale neurocognitive networks) during diffuse low-grade glioma resection does not necessarily induce major, lasting cognitive or sensorimotor impairments (Duffau et al., 2005a; Desmurget et al., 2007)—shaking the very foundation of behavioural neurology. It is now thought that the massive removal of brain tissues is made possible by the progressive, functional reshaping induced by the slow growth of this type of tumour (Desmurget et al., 2007). This may partly explain why patients with diffuse lowgrade glioma typically present with mild, relatively non-specific cognitive disturbances before surgery (Heimans and Reijneveld, 2012). However, recent but sparse evidence suggests that plasticity is limited for some brain areas—most notably those with a key position in long-range neural networks (such as those providing axonal connectivity). The lack of functional compensation for white matter tract damage has been variously demonstrated in patients with diffuse low-grade glioma (Ius et al., 2011; Herbet et al., 2014a), stroke (He et al., 2007) and in patients with other pathologies (such as traumatic brain injury) (Genova et al., 2014; Sharp et al., 2014; Cristofori et al., 2015; Herbet et al., 2015b; Fagerholm et al., 2015). In this context, diffuse low-grade glioma is undoubtedly an outstanding pathophysiological model for the investigation of neuroplastic potential, and thus may help to reveal critical brain systems whose loss can never be compensated for. By taking advantage of observations in patients with diffuse low-grade glioma, researchers have developed atlases of functional resectability (Mandonnet et al., 2007; Ius et al., 2011). However, the relatively low numbers of patients included in these projects limited the statistical power, the extent of the areas examined and thus ability to draw inferences. Furthermore, the atlases were solely descriptive. These considerations prompted us to apply a more systematic, comprehensive approach to this topic. Hence, the primary objective of the present study was to build a probabilistic atlas of functional plasticity by using both anatomic MRI data and the results of intraoperative mapping in a homogeneous cohort of 231 patients with diffuse low-grade glioma. We focused on understanding: (i) the anatomic factors that constrain G. Herbet et al. lesion-induced plasticity; and (ii) the role of white matter fibre connectivity in particular. A secondary objective was to provide a tool that clinicians and researchers could use easily and widely. Materials and methods Data collection and patients Neuroanatomic and intraoperative mapping data on 231 patients [98 females; mean standard deviation (SD) (range) age: 39.68 10.17 (18–66) years] were collected retrospectively (n = 386 before applying exclusion criteria; see below). All patients had been operated on for histopathologically confirmed diffuse low-grade glioma by the same, highly experienced neurosurgeon over a 5-year period (2009–14) and thus had undergone multifunctional cortical and subcortical intraoperative mapping with direct electrical stimulation. Patients presenting with a high-grade glioma or having received radiotherapy (i.e. with a possible impact on neurological functions and brain plasticity) were excluded from our analysis at the outset (n = 109). Patients having undergone supratotal resection (i.e. complete resection plus removal of a wide margin around the tumour) were also excluded (n = 22), so that only patients with a complete or partial resection were included. Patients with abnormalities on MRI (e.g. tumour-related deformation, hygroma, abnormal ventricle size, etc.) were also excluded (n = 8) to avoid normalization problems (Supplementary material). All subjects gave informed consent for the retrospective extraction of their clinical data. Figure 1 shows the study flow chart and the clinical data specifically extracted for the present analysis. Cortical and subcortical intraoperative mapping Diffuse low-grade glioma is a rare neurological tumour that progressively invades the brain parenchyma. It preferentially migrates along white matter fibre pathways. Its typically slow rate of spreading is a crucial pathophysiological feature because it allows progressive, functional compensation for damaged structures, as recently modelled (Keidel et al., 2010) and formally demonstrated with functional MRI (Krainik et al., 2004). Although this marked, lesion-induced plasticity is a prerequisite for neurosurgery in patients with diffuse low-grade glioma, between-area variability in the neuroplastic potential (Duffau et al., 2005a; Mandonnet et al., 2007; Ius et al., 2011) and between-subject variability in anatomic and functional organization (Tate et al., 2014) necessitate the use of a intraoperative cognitive and sensorimotor monitoring with direct electrostimulation. Stimulation induces a transitory functional inactivation and enables anatomicfunctional correlations to be established in real-time. Hence, functional structures can be detected and spared. The systematical use of intraoperative functional mapping in brain tumour surgery has almost fully abrogated the risk of sensorimotor impairments and has considerably reduced the occurrence of cognitive comorbidities—at least for the functions assessed during the procedure. Although direct electrostimulation has generally been used to provide a functional map of the cortical Mapping neuroplasticity potential BRAIN 2016: 139; 829–844 | 831 Figure 1 Study design, showing the time course of the patients’ perioperative management and the data extraction. The purple box indicates the clinical data extracted for the present study. surface, our group has developed great expertise in subcortical mapping over the past two decades (Duffau, 2015). Our ability to perform both cortical and subcortical mapping was a crucial aspect of the present work. In the present study, we used a bipolar electrode (tip-to-tip distance: 5 mm) to deliver biphasic current (using the Nimbus system from Newmedic) with the following characteristics: pulse frequency: 60 Hz; single pulse phase duration: 1 ms; amplitude: 1–5 mA (mean SD: 2.77 0.87 mA); stimulation duration: no more than 4 s. The surgical technique has been described in detail elsewhere (Duffau et al., 1999, 2002, 2005b). During wide-awake surgery, we systematically assessed word articulation and sensorimotor processes (Schucht et al., 2013; Rech et al., 2014; Almairac et al., 2015) and language ability, including semantic cognition (Duffau et al., 2002, 2005b; Moritz-Gasser et al., 2013). Depending on the site of the lesion, we also assessed visuospatial cognition (Thiebaut de Schotten et al. 2005), social cognition (Herbet et al., 2015c), visual processes (Gras-Combe et al., 2012) and reading aloud (Zemmoura et al., 2015) (see Supplementary Table 1 for an overview of the tasks used during surgery and the disturbances induced). Anatomic MRI High-resolution 3D-T1 (resolution: 1 1 1 mm) images and fluid-attenuated inversion recovery (FLAIR) images (resolution: 0.898 0.898 6 mm) were acquired 3 months after surgery (i.e. once surgery-related oedema has usually receded) with a 1.5 T Siemens Avento system or a 3 T Siemens Skyria system (Siemens Medical Systems). The FLAIR sequence was mostly used because it provides much higher contrast between normal brain tissue and infiltrated brain tissue than the 3D-T1 sequence. The latter was only used to represent the distribution of cavity resections with a high spatial resolution. Atlas construction The primary objective of the present study was to establish a probabilistic atlas of functional plasticity by using intraoperative direct electrostimulation responses as an indicator of the presence of sensorimotor and mental functions within the lesioned brain structures. The basic premise is that damaged tissues that still show some degree of function are more refractory to functional compensation (Mandonnet et al., 2007). Importantly, all the resections in our centre are performed according to the individual’s functional limits (this is a key strength of our patient cohort and enabled us to apply the methodology described here). Hence, lesioned tissues are only spared by the surgeon if the area is responsive to direct electrostimulation (i.e. with a transitory sensorimotor/cognitive impairment). Accordingly, it follows that the postoperative residual lesions (i.e. lesioned tissues not resected, viewed with anatomic FLAIR MRI) contain voxel sites at which a functional response was elicited. Accordingly, it is easy to compute the probability () of observing a stimulation-induced functional disturbance by simply generating the ratio between the cumulative number of postoperative residual lesions [npost(x,y,z)] and the cumulative number of preoperative observed lesions [npre(x,y,z)] for each voxel (x,y,z): ðx; y; zÞ ¼ npost ðx; y; zÞ npre ðx; y; zÞ The resulting probabilistic map (with a 0 to 1 scale) approximates to a functional compensation index for each voxel, where 0 corresponds to the total absence of a functional response for a lesioned voxel (i.e. a high functional compensation index) and 1 corresponds to the omnipresence of a functional response (i.e. a low functional compensation index). For example, if a given voxel contained 20 residual lesions after surgery and 24 before surgery (i.e. the voxel in question was resected four times), the probability of observing a functional response in this voxel is 20/24, i.e. 0.83. This rather high probability can be interpreted as a low functional compensation index. To generate this type of map, we reconstructed the preoperative lesions and postoperative residual lesions for each patient. The procedure for normalizing MRI data in MNI space and defining the lesions is detailed in the Supplementary material. We then created a ‘preoperative lesion overlap map’ and a ‘postoperative residual lesion overlap’ using MRIcron software (http://www.mccauslandcenter.sc.edu/mricro/mricron/). The number of lesions in each voxel in each map [npre ðx; y; zÞ and npost ðx; y; zÞ] and the ratio between these respective numbers (ðx; y; zÞ) were automatically computed using an in-house software routine developed in MATLAB (release 2014b, The MathWorks, Inc., Natick, MA, USA). A schematic illustration of the experimental procedure is provided in Fig. 2. | BRAIN 2016: 139; 829–844 G. Herbet et al. The confidence map feature enables one to perform additional analyses and makes the Rojkova et al. atlas particularly interesting to work with. For the purposes of the present study, we selected all the associative fasciculi: the inferior fronto-occipital fasciculus (IFOF), the inferior longitudinal fasciculus (ILF), the uncinate fasciculus, the three branches of the superior longitudinal fasciculus (SLF I, II and III), the anterior, posterior and long segments of the arcuate fasciculus (SLF III), and the cingulum. We also extracted the corticospinal tract and the major frontal tracts (notably the frontal aslant tract, the frontostriatal tract, the superior frontal tract (SFT) and the orbitopolar tract). These tracts were then thresholded at a value of 0.5 (i.e. a 50% probability that a given voxel belongs to a specific tract). The functional plasticity map was then projected onto each pair of fasciculi. We used the Duda-Hart test to decide whether the functional compensation index () should be split into two or more clusters (Duda and Hart, 1973). This test is not a clustering test per se but helps to determine whether a given data set is homogeneous (the null hypothesis) or inhomogeneous (the alternative hypothesis). If the null hypothesis is rejected (P 5 0.001, in the present study), a formal cluster analysis is performed (see Tate et al., 2014 for this type of use of the Duda-Hart statistic). Given that statistical tests applied to normally distributed data are strongly biased by the number of observations (Lin et al., 2013) and that the size of white matter tracts (i.e. the number of voxels) can vary considerably, we took certain precautions to minimize these sources of bias in our statistical analysis. First, the DudaHart test was iteratively performed on a few samples of voxels, rather directly on the entire dataset for each pair of fasciculi. More specifically, each white matter tract was separated into n samples of 450 voxels (Supplementary material). The voxels in each sample were randomly distributed, using a permutation procedure. The Duda-Hart test was then applied independently to each voxel sample. A tract was only considered to be inhomogeneous (and therefore eligible for cluster analysis) if all the Duda-Hart tests were significant. For instance, if a given tract contained 9534 voxels, this tract was separated into 21 samples of 454 voxels and was considered as inhomogeneous if all the 21 Duda-Hart test results achieved statistical significance. Once a particular bundle was categorized as being heterogeneous, the cluster analysis per se was carried out on the functional compensation index () by using the unsupervised k-means algorithm (with k going from 2 to 7; we did not set the number of clusters in advance). The Bayesian information criterion (BIC, Schwarz, 1978) was then used to determine the optimal number of clusters. As the k-mean algorithm assumes sphericity, we derived a Gaussian mixture model based on the clusters’ respective sizes, means and dispersions. We then computed the model evidence (i.e. the probability of actually observing the data with that particular model) and used it in the BIC as the model’s likelihood, which corresponds to a goodness-of-fit criterion. 832 To better gauge the scope of the results, detailed information on confidence [i.e. the extent to which we can say that () is reliable for a given voxel] is required. The robustness of the functional plasticity map is directly related to the number of preoperative observations in each voxel (npre). Indeed, the more often a given voxel is damaged prior to surgery (npre), the greater the degree of confidence in the functional compensation index computed for this voxel (npost)—irrespective of the number of postoperative lesions. However, the number of preoperative lesions is not linearly related to the level of confidence. The difference in confidence between 1 and 10 observations in a voxel is much greater than the difference in confidence between 25 and 34 observations, although the absolute difference remains the same: the confidence in () is null when npre is 1, generally acceptable when npre is 10, and excellent when npre is between 25 and 34. In this context, we therefore generated a power map in which the degree of confidence in each voxel !(x,y,z) was defined according to the following equation: !ðx; y; zÞ ¼ logðnpre ðx; y; zÞ þ 1Þ logðN þ 1Þ where N is the total number of patients (231). The log-scaled power index ð!Þ ranges from 0 (areas not covered in the map) to 1 (the maximum theoretical level of confidence, which would be achieved if a given voxel was damaged in all patients). Region of interest-based analyses of the cortex Because intra- and interregion potentials for functional compensation in the cortex can vary markedly, we used a region of interest-based approach to classify the neuroplastic potential of areas of the cerebral cortex. To this end, we simply computed the mean SD and the mean SD ! for each anatomic region (except for less well covered areas, i.e. the occipital cortex and structures close to the brainstem—particularly the amygdala and the hippocampal complex). Individual cortical regions of interest (78) were generated using the Wake Forest University PickAtlas toolbox (Maldjian et al., 2003). All but one of the region of interest masks [Brodmann area (BA)10, from the digital Brodmann atlas] were derived from the Automated Anatomical Labeling atlas (Tzourio-Mazoyer et al., 2002). For each mask, we computed the mean SD and thus classified the regions of interest according to their respective functional compensation indices. Cluster analyses of white matter tracts First, we selected white matter tracts of interest from the tractography-based atlas recently published by Rojkova et al. (2015). In contrast to the atlas built by the same group a few years ago (Thiebaut de Schotten et al., 2011), the new atlas is derived from MRI data on 48 healthy, right-handed subjects of much the same age (mean SD: 45.45 14.79 years) as our study population; this should limit any age-related bias. Furthermore, the new atlas incorporates the major frontal intralobar tracts as well as the classical associative and projection pathways; this Results The spatial topography of the lesions Given that our cohort of patients with diffuse low-grade glioma was the largest and most homogenous studied to Mapping neuroplasticity potential BRAIN 2016: 139; 829–844 Figure 2 Schematic illustration of the procedure for generating the functional plasticity map and the confidence map. | 833 834 | BRAIN 2016: 139; 829–844 date, we focused on the spatial topography of the tumour resections and the residual lesions. As shown in Fig. 3A, the resection cavities’ overlap indicated that resections in the temporal lobe, the ventroposterior part of the right and left prefrontal cortices, and the left pre-supplementary motor area were most frequent. The maximum overlap (n = 34) occurred in the right temporal pole. Figure 3B shows that the voluntarily spared residual tumour infiltrations were distributed all along the course of the white matter tracts and around the perforated substance. The maximum overlap was observed in the right ventral white matter circuitry (n = 25). Functional plasticity, confidence and combined maps Figure 4A shows the probabilistic map of functional plasticity generated by the method described above. It contained 340 levels of probability ranging from 0 to 1. As shown in the Figure, the probability of observing a functional response in damaged tissues (i.e. low functional compensation) was highest ( 4 0.90) in areas of the sensorimotor cortex (including the dorsal part of the precentral and the postcentral gyrus, as well as the paracentral lobule), a small part of the superior temporal cortex (including Heschl’s gyrus and part of Wernicke’s area), the posterior inferior temporal cortex, and the basal ganglia (such as the caudate and the putamen). However, most of the voxels associated with such a high probability were located in deep white matter fibres. In contrast, voxels with the lowest probability levels ( 5 0.10) were observed throughout the prefrontal cortex, the anterior and inferior temporal cortices, the anterior insula, and most parts of the inferior and superior parietal cortices. The log-scaled index ð!Þ of the confidence map was very high in the prefrontal and anterior temporo-insular cortices, the supplementary motor area, the middle temporal pole and in the deep white matter (Fig. 4B). To facilitate interpretation, we generated an additive, hybrid map that combined the functional compensation map and the confidence map (Fig. 4C); this made it much simpler to visually pinpoint structures with high (or low) functional compensation indices with a sufficient degree of confidence. Inspection of the combined map confirmed that most of the white matter tracts (shown in purple) couldn’t be compensated for after damage. In the same way, visual inspection clearly showed that the prefrontal cortex, the anterior insula, the anterior and inferior temporal cortices (in blue) can be compensated for—at least when considering the functions assessed during surgery. Cortical-based region of interest analyses The most representative regions of interest are shown in Fig. 5. It was clear that some regions [such as BA10 (left: G. Herbet et al. = 0.017 0.024; right: = 0.0015 0.020) and the middle temporal pole (left: = 0.040 0.05; right, = 0.057 0.029)] had a very high functional compensation index on both sides of the brain, whereas others [such as the precentral gyrus (left: = 0.433 0.330; right: = 0.691 0.391), the postcentral gyrus (left: = 0.456 0.367; right: = 0.529 0.415), and the insula (left: = 0.527 0.302; right: = 0.343 0.321)] had a low functional compensation index. Interestingly, the standard deviations for these latter areas were large— suggesting that some subparts (but not others) of these areas can be compensated for. For instance, the ventral part of the precentral gyrus (in the premotor cortex) can be compensated for, whereas the dorsal part (in the motor cortex) cannot. An exhaustive description of our results is given in Supplementary Table 2. It is noteworthy that the posterior cingulate exhibited the lowest functional compensation index. Connectivity-based cluster analyses Although visual inspection of the probability map suggested to us that structures with a low functional compensation index corresponded broadly to neural tissue that provides axonal connectivity, it was also clear that the index was not homogeneous along the entire course of a given tract. This observation suggested the presence of specific patterns of neuroplasticity within the tracts (as seen in cortical areas), with some subparts (but not others) exhibiting a high functional compensation index. By way of an example, the middle and posterior parts of the inferior fronto-occipital fasciculus had a low functional compensation index (Fig. 4 coloured in orange or red), whereas the anterior portion, which projects onto a large part of the prefrontal cortex (Catani et al., 2002; Thiebaut de Schotten et al., 2012; Sarubbo et al., 2013), had a high functional compensation index (Fig. 4 coloured in black and blue). Similar conclusions were reached for other associative or projection tracts (see below). In view of the apparent complexity of these results, we simplified the data patterns by performing a cluster analysis (rather than merely projecting the functional plasticity map onto white matter tracts). Given that we did not make any specific assumptions about the data’s intrinsic structure, we applied an unsupervised k-means algorithm (Hartigan, 1975). Only 12 of 17 tracts taken into consideration were clustered (Fig. 6). For each clustered tract, the optimal number of clusters never exceeded two and thus yielded models with a relatively low level of complexity. It is noteworthy that for each cluster, the mean squared error over the voxels never exceeded 2 103 (Supplementary Fig. 1). The between-cluster difference in size varied but was not exceedingly disproportionate—indicating that each cluster was meaningful. The results obtained for the corticospinal tract emphasized the quality of this analysis (Fig. 6). Only the most Mapping neuroplasticity potential BRAIN 2016: 139; 829–844 | 835 Figure 3 Spatial topography of tumor resections and residual lesion infiltrations. (A) The resection cavity overlap map. The ‘rain ramp’ colour scale represents the total number of subjects with a resection at each voxel, from 1 (in black) to 34 (the maximum overlap, in white). (B) The residual lesion overlap map. As in A, the ‘rain ramp’ colour scale was chosen to represent the lesion distribution at each voxel. dorsal-anterior portion of this pathway was judged to have a high functional compensation index. The remainder of the pathway had a very low functional compensation index. This fits well with the observation that direct electrostimulation of most of this fasciculus always induces movement disorders—even after tumour infiltration (Schucht et al., 2013). In general, our cluster analyses segregated some individual tracts into a section with a rather low functional compensation index and a section with a high functional compensation index. When considering (for example) the white matter pathways involved in ventral connectivity, the anterior parts of the IFOF and the ILF had a high functional compensation index, whereas the middle and posterior parts had a very low functional compensation index (Fig. 6). This corresponds well to clinical reality, as direct electrostimulation of the middle and posterior parts of these white matter bundles respectively disturbs semantics (Duffau et al., 2005b; Moritz-Gasser et al., 2013) and the ability to read aloud (Zemmoura et al., 2015), despite lesion infiltration. These interpretations also applied to the different branches of the SLF, the cingulum and certain intralobar frontal tracts (such as the frontostriatal tract and the frontal longitudinal tract). Lastly, two layers of the arcuate fasciculus/SLFIII (the anterior and long segments) were not clustered with a relatively high mean —indicating that the probability of finding a functional response over the entire course was relatively high. This contrasted with other frontal tracts (such as the fronto-polar tract), which were not clustered 836 | BRAIN 2016: 139; 829–844 G. Herbet et al. Figure 4 The components of the functional plasticity atlas. (A) The functional plasticity map. This probability map is plotted according the ‘actc’ colour code. Black (corresponding to a value of 0) means that the probability of detecting a functional response during direct electrostimulation is null (i.e. a high functional compensation index). In contrast, red (corresponding to a value of 1) means that the probability of detecting a functional response during direct electrostimulation is maximal (i.e. a low functional compensation index). The map is thresholded with 340 levels of probability. (B) The confidence map. The ‘rain ramp’ colour code denotes the 376 sensitivity levels of the confidence map. Black corresponds to a null power (i.e. areas not affected by the lesions). White corresponds to the theoretical maximum power. The tick lines on the colour bar indicate the range of the confidence index (0.13, 0.68). (C) The combined map. This map was built by additively combining map A and map B. Red indicates a low functional compensation index with a low level of confidence; purple indicates a low plasticity index with a high level of confidence; blue indicates a high functional compensation index with a high level of confidence; and black indicates a high functional compensation index with a low level of confidence. because of a homogeneous and very low mean (Supplementary Fig. 2). Discussion We have developed a powerful new tool for studying neuroplasticity potential. It has substantial advantages over previously published tools. Specifically, the new atlas is based on a large sample of patients (enabling high coverage) and is accompanied by detailed confidence information and comprehensive anatomic cluster analyses. Our overall findings suggest that whereas cortical plasticity is generally high (except for areas around or belonging to the pre- and postcentral gyrus, the posterior temporal cortex, and the middle and posterior cingulate), functional compensation of white matter connectivity is rather low (most notably in the associative and projection tracts). These general Mapping neuroplasticity potential BRAIN 2016: 139; 829–844 | 837 Figure 5 Cortical region of interest-based analyses. The most representative cortical regions of interest are included in this Figure (see also Supplementary Table 2). In each histogram, the red bar shows the mean SD and the blue bar shows the mean SD !. observations favour the hypothesis whereby the brain harbours a small collection of functionally irreplaceable structures that are essential for the maintenance of a wideranging set of basic cerebral functions, as previously suggested (Ius et al., 2011). Cortical plasticity is high, other than in primary sensorimotor and unimodal association areas The primary sensory cortex and the primary motor cortex are both critical brain structure. The former is an obligatory point of passage for incoming sensory information, whereas the latter provides a unique interface for behaviourally expressing the motor programs generated upstream (Mesulam, 1998). These anatomical functional constraints prompt a relatively simple prediction: the primary sensory cortex, the primary motor cortex and their underlying connectivities (together with regions that solely receive input from primary sensory areas, such as the unimodal association areas) will have a low neuroplastic potential because of the absence of alternative neural circuits for processing sensorimotor information. Our results are consistent with this line of reasoning, as the lowest functional compensation indices were observed in primary areas such as the dorsal part of the precentral gyrus (the motor cortex and the underlying corticospinal tract), the postcentral gyrus (the somatosensory cortex) and Heschel’s gyrus (the auditory cortex). This was also true for areas with a unimodal mode of operation (such as the posterior part of the inferotemporal cortex, the posterior fusiform gyrus, and part of the superior temporal) and other sensorimotor-related areas (such as the paracentral lobule, the most posterior part of the supplementary area and the midcingulate cortex). To some extent, one would expect the multimodal associative areas to display a low functional compensation index. These cortical areas are thought to act as gateways by integrating information from unimodal areas prior to distributed processing (Mesulam, 1990). Accordingly, they have a 838 | BRAIN 2016: 139; 829–844 G. Herbet et al. Figure 6 The tract-based cluster analyses. For each clustered tract, the central figure corresponds to the projection of the tract in 3D. The upper histograms indicate the proportion of voxels in each cluster, on the left and the right of the brain. The lower histograms represent the mean SD of each cluster, on the left and the right of the brain. The ‘actc’ colour code used here is the same as in Fig. 3. UF = uncinate fasciculus; FAT = frontal aslant tract; FST = frontostriatal fasciculus; SFL = superior frontal fasciculus; PFC = prefrontal cortex; TP = temporal pole; MPC = medial parietal cortex; PreC = precuneus; PCC = posterior cingulate cortex; ACC = anterior cingulate cortex; IPL = inferior parietal lobule; SPL = superior parietal lobule; PVPFC = posteroventral prefrontal cortex; SMA = supplementary motor area; d = dorsal; m = medial; v = ventral. Mapping neuroplasticity potential prominent position within functional networks and are generally considered to be critical neural hubs (Buckner et al., 2009). It has been hypothesized that damage to these areas will induce significant, multimodal impairments (Mesulam, 1994; Lambon Ralph, 2014); this hypothesis was recently verified (at least in part) by the results of computational modelling (Honey and Sporns, 2008; Alstott et al., 2009; Crossley et al., 2014) and connectomics-based neuropsychological studies (Gratton et al., 2012). Furthermore, it has been suggested that certain cortical epicentres are early sites of neurodegeneration in Alzheimer’s disease (Buckner et al., 2008). However, it is noteworthy that only a few of these multimodal hubs (such as Wernicke’s area and the mid-to-posterior middle temporal gyrus, for example) displayed a low functional compensation index in the present study. The inferior parietal lobule (other than its most rostral part), the superior parietal lobule, the precuneus (other than its more rostral sensorimotor part), the anterior-to-middle temporal cortex (including the temporal pole) and the entire prefrontal cortex all displayed a high functional compensation index. Strikingly, the posterior cingulate cortex was the area with the lowest mean functional compensation index. In fact, this part of the cortex is considered to be a critical hub because of its huge number of neural connections with almost all of the rest of the cortex and with critical subcortical structures (such as the thalamus) (Leech et al., 2013). In addition to the fact that the posterior cingulate cortex constitutes a key nexus in the default mode network (Fransson et al., 2008), certain researchers have suggested that this area has a role in mediating functional interactions and the level of integration between specialized neural networks underlying highly integrated functions (such as cognitive control) (Fornito et al., 2012; Cocchi et al., 2013). Our recently demonstration (using direct electrostimulation) of the posterior cingulate cortex’s critical involvement in maintaining awareness of the external environment argues in favour of this hypothesis (Herbet et al., 2014b). Our present results are therefore consistent with the posterior cingulate cortex’s central role in the anatomic and functional organization of the brain, as notably suggested by connectomics studies (Hagmann et al., 2008; van den Heuvel and Sporns, 2011). White matter pathways have a low functional compensation index Axonal connectivity takes on a pivotal role in brain dynamics by conveying neural information to a variety of brain loci that are often very distant on the anatomic scale. This long-range organization confers white matter pathways with special physiological characteristics for regulating integration and cortical synchronization (Siegel et al., 2012; Engel et al., 2013). This is especially true for the white matter fibres that underlie associative connectivity (Bressler and Menon, 2010). Consistently, most of the voxels with a low functional compensation index in BRAIN 2016: 139; 829–844 | 839 the current atlas were located along the topographical courses of the main white matter tracts. These observations are exactly in line with brain mapping studies in which most of the associative tracts elicit functional abnormalities, despite tumour infiltration (Duffau, 2015). However, this overall picture was more complex in some respects, as witnessed by the results of our cluster analyses. The vast majority of individual tracts were generally divided into a subsection with a low and a subsection with a high functional compensation index—suggesting that groups of fibres within the same tract differ in their neuroplastic potential. This confirms observations made in clinical practice. A telling example is the ILF, which connects the temporal pole to the occipital cortex and (perhaps) the occipitotemporal junction. Although the posterior part of the ILF is always functional for a set of cognitive processes [including reading aloud (Zemmourra et al., 2015) and visual recognition (Mandonnet et al., 2009)], its anterior part appears to abandon its functional role once infiltrated by a lesion. These gradients of plasticity in the basal inferotemporal system can be analysed with regard to the connectivity patterns in the occipitotemporal area. In addition to projections from the ILF, this region receives widespread neural connections from the posterior segment of the SLF, the IFOF (Bouhali et al., 2014) and (perhaps) the arcuate fasciculus (AF) (Epelbaum et al., 2008) or even the vertical occipital fasciculus (Yeatman et al., 2013). Accordingly, one can speculate that the information broadcast by the ILF towards the temporal pole under normal circumstances could be redistributed via other connectivities if functional compensation is prompted by tumour growth or another type of damage (Duffau et al., 2013). In the present study, certain tracts with a low mean functional compensation index (such as the AF and the anterior SLF, corresponding to the anterior segment of the AF) were not clustered. Crucially, these tracts provide a relatively limited range of cortical terminations from a topographical standpoint. For example, the anterior SLF only connects the supramarginal gyrus to the precentral gyrus. It was recently reported that although the ventral part or the precentral gyrus (which is involved in articulatory processes) can usually be resected, the plasticity of this area is spatially constrained. Indeed, functional compensation was only observed more dorsally within the precentral gyrus— suggesting that the premotor cortex has to stay connected to the anterior SLF via its dorsal cortical terminations. This could explain why this tract manages to retain its primary function after damage (van Geemen, et al., 2014). The same interpretation might apply to the long segment of the AF, which connects the posterior inferior frontal gyrus to the posterior temporal areas. Although our group has previously demonstrated that it was possible to completely remove Broca’s areas without inducing language impairments (Plaza et al., 2009), the AF per se probably maintains functional communication between the temporal 840 | BRAIN 2016: 139; 829–844 G. Herbet et al. Figure 7 A schematic explanation of the lack of functional compensation of the middle-to-posterior part of the IFOF. (A–C) These panels are described in the main text. Green arrow = superficial and ventral layer of the IFOF; blue arrow = deep and dorsal layer of the IFOF. ‘Transparency’ indicates the IFOF subnetwork damaged by the tumour. dlPFC = dorso-lateral prefrontal cortex; MFG = middle frontal gyrus; FPC = fronto-polar cortex; OFC = orbito-frontal cortex; IFG = inferior frontal gyrus; STG = superior temporal gyrus; ITG = inferior temporal gyrus; SPL = superior parietal lobule. cortex and the posterior dorsolateral prefrontal cortex (within which the tract also has cortical terminations) (Martino et al., 2013). In this respect, it is noteworthy that language impairments are regularly observed during direct electrostimulation of the posterior dorsolateral prefrontal cortex (Tate et al., 2014). Interpretation of the results of cluster analysis is subject to some limitation. Although this statistical approach generated convincing findings, it may sometimes result in oversimplification and excessive extrapolation. For example, our cluster analyses indicated that the most anterior part of the IFOF had a high functional compensation index Mapping neuroplasticity potential (Fig. 6). However, it should be borne in mind that not all of the IFOF’s frontal connections are resectable; only the infiltrated fibres should be resected. The IFOF has a multilayer structure, as revealed by anatomic dissection (Sarubbo et al., 2013) and q-ball tractography (Caverzasi et al., 2014). There are at least two main strata that differ in terms of their frontal cortical terminations: the deep, dorsal layer projects into the prefrontal dorsolateral cortex and the anterior prefrontal cortex, whereas the superficial, ventral layer projects mainly toward the pars orbitalis, triangularis and opercularis of the inferior frontal cortex. Importantly, tumours never affect all of the IFOF subnetworks. Indeed, tumours that originate in the insula generally damage only the inferior frontal gyrus; in such a case, only the ventral and superficial branches will be resected (Fig. 7A). In contrast, tumours that originate in the pre-SMA or the SMA generally damage structures connected with the dorsal layer, and so only the dorsal and deep branches of the IFOF will be resected (Fig. 7B). Given that the two layers share a route in the temporal and occipital cortices, the tract’s middle and posterior parts will remain functional (corresponding to the ‘non-resectable’ cluster). Indeed, some groups of fibres may still serve certain parts of the prefrontal cortex. Likewise, the IFOF remains functional when its middle part is damaged because the tract continues to provide a direct pathway between undamaged frontal and occipital areas (Fig. 7C). Importantly, the fact that a given tract maintains function does not mean that it is functionally disrupted (at least to some extent). Indeed, recent research has demonstrated that behavioural disturbances before or after surgery are mainly explained by the degree of damage to white matter tracts— notably for language (Almairac et al., 2015) and social cognition (Herbet et al., 2014a, 2015a). As a consequence, it is possible that disconnection is the main obstacle to functional recovery after surgery; this hypothesis must be specifically investigated in future work. Clinical implications Although the present conclusions are based on data from patients with diffuse low-grade glioma, our findings go beyond the framework of this neuro-oncological condition. It is increasingly thought that disruption of structural connectivity may be a key pathophysiological feature in patients with poor functional outcomes after neurological insult with diverse aetiologies. For instance, Cristofori et al. (2015) have recently shown that damage to the SLF and frontal projection fibres was good predictor of lack of long-term recovery of executive functions following a penetrating traumatic brain injury. In a similar vein, Karnath et al. (2011) and Thiebaut de Schotten et al. (2014) respectively demonstrated that disruption of right ventral connectivity (including the IFOF and ILF) or the SFL II is a strong predictor of persistent spatial neglect after right-side stroke. A recent large-scale neuropsychological study by Corbetta et al. (2015) also found that post-stroke impairments were BRAIN 2016: 139; 829–844 | 841 mainly explained by disconnection mechanisms—leading the researchers to propose a complete revision of today’s anatomic-functional models derived solely from neuropsychological data on stroke patients. Given the convergence between these literature findings and the present results, our new atlas may help to predict a patient’s likelihood of recovery as a function of the lesion topology in other brain conditions. The key hypothesis is that patients with structural insult to certain anatomic connectivities (as defined in the present study) will have a poor functional outcome. It would therefore be useful to extend our present study to other patient populations and validate (or not) the new atlas in that context. Study limitations The present study had certain limitations. First, the current atlas is based on the premise that the absence of a direct electrostimulation effect in a damaged tissue constitutes evidence of plasticity. However, it should be borne in mind that there is inter-individual variability in the site of functional epicentres (most notably in the cortex) and that the absence of a functional response to direct electrostimulation might correspond to a false negative in some rare cases. Second, the atlas cannot be extrapolated to all brain functions, as it only concerns the functions assessed by direct electrostimulation mapping during surgery (Supplementary Table 1). Although a number of critical brain processes were carefully scrutinized, technical constraints (related to direct electrostimulation) and the clinical context (limited time) prevented us from assessing the highest-level processes (such as executive functions); this may have caused us to overestimate the degree of plasticity. However, almost all the patients in our centre routinely undergo extensive neuropsychological assessments before surgery and then a few days and a few months thereafter; this enables us to check whether a wide range of cognitive functions [including some not mapped during surgery, such as working memory (Teixidor et al., 2007), high-level social cognition (Herbet et al., 2013) and executive function (Duffau, 2014)] are retained effectively. It should be noted that all the study participants (except those aged over 60–65, i.e. retirees) resumed normal socioprofessional activities 3 months after surgery. Another limitation relates to certain biases that influence appropriate use of the atlas. Specifically, a few infiltrated areas of the brain were not stimulated. As a consequence, the functional compensation index within these areas should be considered as information on ‘non-resectability’ rather than on plasticity. This is notably the case for structures close to the brainstem or near to the anterior perforated substance or the dorsoposterior insula (see above). Hence, we were not able to provide interpretations for structures such as the hippocampal and para-hippocampal complex, the amygdala, the posterior cingulate bundle, and the deep part of the uncinate fasciculus. Furthermore, it is worth emphasizing that the routine clinical MRI datasets 842 | BRAIN 2016: 139; 829–844 acquired in the present study had a rather low axial resolution. The use of FLAIR sequences (with a higher resolution) might further improve the atlas. It should also be borne in mind that methodological issues inevitably arise when applying a cluster analysis: (i) the decision to cluster a particular tract is partly constrained by some of the parameters we used (see ‘Materials and methods’ section); and (ii) the penalization related to the number of clusters is arbitrarily defined in the BIC (although the Akaike information criterion gave similar results—data not shown). Despite these limitations, the patterns obtained were highly consistent. Importantly, the cluster analyses were simply performed on the measure— meaning that no prior information about the white matter bundles’ anatomic structures was specified in the analyses at all. Furthermore, all the clustered bundles were clearly meaningful at the anatomic level (i.e. the voxels in each cluster were not spread across the bundles but were highly organized). Last, all tissues infiltrated by the lesion (according to FLAIR images) were considered to be damaged to the same extent. In fact, there is probably a degree of variability in the signal intensity within the tumor (notably in the centre). Although this potential confounding factor was not controlled for in our study (due to the use of different scanners), there is currently no evidence to suggest that a difference in FLAIR signal intensity/lesion density is related to differentially affected brain functions. Infiltration of any tissue can potentially lead to impairment—even for lesions at the edge of the tumour. For instance, infiltrations within the deep white matter are typically less dense that those located in the centre of the lesion (which is usually located in the cortical matter or at the junction between the grey matter and white matter). Yet we know now that the infiltration of white matter tracts can be correlated with functional disturbances (Almairac et al., 2014; Herbet et al., 2014a). It should also be noted that the FLAIR signal intensity is relatively homogeneous in diffuse low-grade glioma, relative to other types of tumor (such as high-grade glioma). Conclusion Using a systematic, multimodal approach with special emphasis on long-range white matter fibres, we developed an atlas of neuroplasticity. Our overall findings clearly demonstrate that long associative tracts are critical building blocks within brain-wide neurocognitive networks. In addition to providing this fundamental insight, the new atlas is a unique tool for surgical planning and may be useful for predicting the likelihood of recovery (as a function of lesion topology) in various neurological conditions. This may be critical for identifying patients who require cognitive rehabilitation and for providing appropriate care. 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