UvA-DARE (Digital Academic Repository) Macroevolution of Animal Body plans Jenner, R.A. Link to publication Citation for published version (APA): Jenner, R. A. (2002). Macroevolution of Animal Body plans Amsterdam: Grafische Producties, UvA General rights It is not permitted to download or to forward/distribute the text or part of it without the consent of the author(s) and/or copyright holder(s), other than for strictly personal, individual use, unless the work is under an open content license (like Creative Commons). Disclaimer/Complaints regulations If you believe that digital publication of certain material infringes any of your rights or (privacy) interests, please let the Library know, stating your reasons. In case of a legitimate complaint, the Library will make the material inaccessible and/or remove it from the website. Please Ask the Library: http://uba.uva.nl/en/contact, or a letter to: Library of the University of Amsterdam, Secretariat, Singel 425, 1012 WP Amsterdam, The Netherlands. You will be contacted as soon as possible. UvA-DARE is a service provided by the library of the University of Amsterdam (http://dare.uva.nl) Download date: 15 Jun 2017 Chapterr 4 Evolutionn of Animal Body Plans: thee Role of Metazoan Phylogeny at thee Interface between Pattern and Process s Ronaldd A. Jenner Publishedd in Evolution & Development 2: 208-221 (2000) 75 5 76 6 Evolutionn of animal body plans: the role of metazoan phytogeny at the interfacee between pattern and process Ronaldd A. Jenner Institutee for Biodiversity and Ecosystem Dynamics, University of Amsterdam, P.O. Box 94766,1090 GT Amsterdam, Thee Netherlands Conaspondenoss (emaB: jenmrObio.uva.nl) SUMMARYY Comprehensive integrative studies are the haB- sicall view. First, I expose this tradrttonal view to be a sknpMed markk of evolutionary developmental biology. A properly de- historicall abstraction that became textbook dogma. Second, I finedd phytogenetic framework takes a central place in such discusss how tworecentimportant stuoles of animal body plan analysess as the meeting groundtorobservation and inference. evolution,, examining the evolution of the platyhelminth body Molecularr phytogenies take mis place in many current stuoles planarKltr»evolutic<wrysignfflcaric^ ^ onn animal body plan evolution. In particular, 18S rRNA/DNA andd set-aside eels, have actively incorporated two problematic sequencee analyses have yielded a new view of animal evolu- aspectecrftrwrawtyemerüjngrrwleculajvtew w tiontion that is often contrasted with a presumed traditional orclaslution:: incomplete and unresolved phytogenies. EVOLUT10NARYY DEVELOPMENTAL BIOLOGY ANDD T H E CENTRALITY OF PHYLOGENET1CC INFORMATION Georgee Gaylord Simpson (1951, p. 51) wrote "Over and over againn in the study of the history of life it appears that what can happenn does happen." Particularly studies of animal developmentt and phylogeny have recently played key roles in elucidatingg the potentialities and actualities of the evolutionary historyy of the animal kingdom, and it is in die field of evolutionaryy developmental biology (popularly called "evo-devo") wheree such studies of development and phylogeny meet. Evo-devoo seeks to explain the evolution of morphology and developmentt and the underlying developmental and genetic mechanismss by comparing different organisms. A properly definedd phylogeny is the only meaningful framework for comparisonn if the goal is the reconstruction of die nature and directionn of evolutionary change, and the discrimination betweenn convergent similarity and homology (Raff 1996; Arthur 1997;; Hall 1999). Consequently, it is instructive to consider inn detail the basis of some of die recent advances in our understandingg of the evolution of animal body plans. The use off I8S rRNA/DNA phytogenies is rapidly gaining prominencee as the basis for building evolutionary scenarios. At presentt there is no generally accepted morphology-based phylogenyy of the Metazoa to compete with it, even with thee widespread adoption of cladistic methods (Jenner and Schramm 1999). Often, a traditional textbook phylogeny based onn morphology is contrasted with the emerging view from molecularr systematics. Inn mis paper I address die following issuesfroma phylogeneticc perspective. First, 1 consider the traditional textbook phylogenyy and explore its historical roots. Second, I criticallyy discuss die newly emerging view of animal evolution basedd on 18S rRNA/DNA sequence data, which is sketched inn the latest generation of review papers as a basis for advancingg scenarios of body plan evolution. The new view of animall evolution is often presented in phytogenies characterizedd by two striking features: lack of resolution and incompleteness.. These data limitations have subsequently been activelyy incorporated as essential ingredients into various importantt new hypotheses of animal body plan evolution. Third,, I will re-evaluate two of these hypotheses that are beginningg to be considered major advances in our understandingg of animal evolution: platyhelminthes as derived coelomates,, and the evolutionary significance of set-aside cells andd their rote in the Cambrian explosion. METAZOANN MORPHOLOGY, UBBIE HYMAN, ANDD THE "TRADITIONAL" VIEW OF ANIMALL EVOLUTION Sincee Ernst Haeckel codified our profession by coining its currentt name and by establishing a coordinated research programm for the elucidation of evolutionary relationships be- OO BLACKWEU. SCIENCE. MC. 77 7 tweenn organisms, the study of higher level animal phytogeny pliess structural resemblance or evolutionary propinquity. hass yielded an expansive literature but relatively little de- Second,, Hyman published The Invertebrates over a time tailedd consensus. It is therefore not surprising often to find spann of 27 years, creating enough room for change of opinmerelyy the shortest of possible summaries of morphological ion.. She considered views on animal relationships as ephemphylogeneticss in current papers on the subject Winnepen- erall products, necessarily changing with the accretion ofnew ninckxx et al. (1998a, p. 888) epitomize tfiis approach in die dataa (Hyman 1940, p. 27; 1959, p. 697). Nevertheless, her firstt sentence of their paper "Despite several decades of mor- distilledd views have been widely accepted as "traditional" phologicall and anatomic research, numerous aspects of meta- consensuss by many biologists, and Hyman's viewpoint has zoann relationships have remained uncertain." Their discus- beenn considered as so well established and typical mat it is sionn then turns to die revisionary views from molecular noo longer necessary to refer to any particular of her works systcmatics.. Aguinaldo and Lake (1998), Holland (1998), (seee Barth and Broshears 1982; Ruppert and Barnes 1994), Balavoinee (1998), and Erwin (1999) adopt a similar approach andd that her view can stand as an epitome for the Anglobyy invariably presenting the Anglo-Saxon "traditional text- Saxonn view of animal relationships (Willmer and Holland bookk view,'" die acoelomate-pseudocoelomate-coelomate 1991).. I will provide an alternative perspective on Hyman's series,, as an icon for metazoan phytogeny based on morphol- viewss on animal phylogeny, which I regard as better supogy.. Balavoinc (1998), Balavoine and Adoutte (1998), Ad- portedd by her own statements than the traditional textbook outtee et al. (1999), and Valentine et al. (1999) in fact claim treee for which her support is commonly claimed. thatt such a phylogenetic series represents "... a glorious saga Hymann indeed divided the Metazoa into diploblasts and off progressive increase in complexity . . ." (Adoutte et al. triploblasts,, although her difficulties with die germ layer fheory 1999.. p. 105), arising from ". . . the intellectual bias for in- ledd her to regard die distinction between Radiata and Bilateria creasingg complexity in evolution . . ." (Balavoine and Ad- ass more meaningful (Hyman 1940). Widiin the Bilateria, Hyouttee 1998, p. 397). It would be a serious problem indeed if mann did indeed distinguish between acoelomates, pseudocoeourr efforts to reconstruct animal phytogeny would produce lomates,, and coelomates stating: "Such a division stands firmly nothingg more than manifestations of our intellectual disposi- onn a realistic anatomic basis and eschews all theoretical vationn for increasing complexity in evolution. However, I will porizings..."" (Hyman 1940, p. 35). She stated that "These showw that these assessments are distorted and misleading. groupingss [acoelomates, pseudocoelomates, coelomates] do Inn point of fact, there exists no such thing as "the tradi- not,, however, entirely correspond to taxonomie relationships'' tionall textbook phytogeny." A diversity of different schemes (Hymann 195 la, p. 23). Hyman interpreted diese groups not as cann be found, influenced by factors such as nationality, depth cladess or phylogenetic groups, but as organizational grades (Hyoff historical treatment, and a whole range of personal per- mann 1940, chapter II). Her consideration of priapulids strikspectivess of the textbook authors (e.g., Willmer 1990; Will- inglyy illustrates this distinction: priapulids are classified as merr and Holland 1991). The most frequently mentioned schizocoell coelomates based on structural grade (Hyman sourcee in Anglo-Saxon works is Hyman's influential series 1940,, p. 34) but phylogenetically united wim die pseudocoeTheThe Invertebrates (1940-1967) (e.g., Field et al. 1988; Rafflomatee aschelminths (Hyman 1951b, pp. 54,56, 196.197). ett al. 1989; Schram 1991; Willmer and Holland 1991; Rup- Hymann stated that schizocoel coelomates are related to die pertt and Barnes 1994; Balavoine 1998; Garey and Schmidt- acoelomatess and pseudocoelomates, together comprising die Rhaesaa 1998; Adoutte et al. 1999). Hyman is often cited in Protostomiaa (Hyman 1940, p. 36; 1951a, p. 5). She envisioned supportt of the traditional textbook phytogeny (e.g., Barth thee immediate splitting of die Bilateria from the last, acoetoandd Broshears 1982; Willmer 1990; Schram 1991; Willmer mate,, common ancestor into two lineages (Hyman 195 la, p. 4): andd Holland 1991; Ruppert and Barnes 1994; Willmer I99S; onee leading to die Deuterostomia (enterocoelous coelomates) Garcyy and Schmidt-Rhaesa 1998; Adoutte et al. 1999), andd one leading to the Protostomia, which includes the extant whichh can be summarized as follows: after the divergence of acoelomates,, pseudocoelomates, and coelomate protostomes. thee Radiata (Cnidaria and Ctenophora), the bilaterians are ar- Shee considered die Protostomia as".. .evidently relatedtoeach rangedd in the acoelomate-pseudocoelomate-coelomate (pro- other"" (Hyman 1951a, p. 5). The only metazoan phylogeny from tostomess and deuterostomes) series, which reflects succes- TheThe Invertebrates (Hyman 1940, Fig. 5) reflects diis grouping sivee branchings of dwse mree clades. How well is mis Herr provisional acceptance oftiiisdiphyletic dieory ofbilaterianrian relationshipstiiereforecontradicts die monophyletic Eu phylogeneticc scheme corroborated in Hyman's work? Itt is not easy to represent accurately Hyman's opinion on coelomata,, comprising both coelomate protostomes and deumetazoann relationships for several reasons. First, she re- terostomes,, which is at die heart of die traditional textixwk gardedd classification and phytogeny as two logically distinct phylogenyyforwhich Hyman's support is often claimed (Barm devicess to represent the "relationships" between organisms andd Broshears 1982; Field etal. 1988; Raffetal. 1989; Willmer (1940,, chapter 11). Consequently, when Hyman described 1990;; Schram 1991; Willmer and Holland 1991; Ruppert and "affinities"" it may be difficult to determine whether this im- Barness 1994; Willmer 1995; Garey and Schmidt-Rhaesa 1998; 78 8 Adouttee et al. 1999). Seemingly reasonable arguments in support describess "higher" and "lower" groups, and specifies the oroff the traditional interpretation can be traced to two sources derr of treatment of the phyla in The Invertebrates according inn Hyman: discussions of body cavities in 1940 (chapter II) too "... the general order of their structural complexity" (1940, andd 195 la (chapter IX) and discussion of the phylogenetic p.. 38), she refers to a series of organizational grades, not a affinitiess of lophophorates (1959, chapter XXII). phylogeneticc series (e.g., see Willmer 1990, p. 5 for an illusDeducingg support for Eucoelomata as a phylogenetic unit trationn of this confusion). The only potential genuine phylofromm Hyman's discussions of body cavities is based on a geneticc series according to body cavity construction in Hyconfusionn of grades and clades. As mentioned above, Hyman man'ss work is die hypothesized series of ancestors leading to regardedd the division of bilaterians into acoelomates, pseu- thee protostomes (1951 a, p. 17): planuloid ancestor—acoeloid docoelomates,, and eucoelomates not as phylogenetic units, ancestorr (acoelomate grade)—trochozoon (pseudocoelomate butt as organizational grades. Only by misinterpreting these grade).. But this is distinct from the progressive series leading gradess as clades, by denying the argued phylogenetic unity too a monophyletic Eucoelomata depicted in most recent paoff the Protostomia, and by judiciously connecting the perss quoting Hyman's work. Inn conclusion, citing Hyman as the principal source for the branchess in ascending order from acoelomate to coelomate cann one defend Hyman's discussion of body cavities to sup- "traditionall textbook tree" is either based on a confusion of portt the traditional textbook tree. This reasoning may ex- gradess and clades or is at best a simplified abstraction of her plainn the appeal to Hyman in support of the traditional phy- views.. Nevertheless, the Hymanian phylogeny has become logcnyy in various papers (e.g., Schram 1991; Willmer 1995; dogmaa in subsequent works, and an icon for the Anglo-Saxon Carranzaa et al. 1997; Garey and Schmidt-Rhaesa 1998; Ad- vieww on animal phylogeny. In contrast, I would argue that her mostt cogently argued opinion on animal phylogeny is outouttee etal. 1999). AA second potential source of support for the traditional in- linedd in the first volume of The Invertebrates (mainly chapter terpretationn of Hyman may be her discussion of the lopho- II)) and is reinforced at various places in later volumes, and phoratess (which she considered protostomes) as intermedi- paintss a different picture of animal phylogeny summarized in atess between coelomate protostomes and deuterostomes. The Fig.. 5 of Hyman (1940). It emphasized die unity of the Promostt convincing statement is that"... deuterostomes show a a tostomia,, including acoelomates, pseudocoelomates, and cofurtherr development of characters beginning in an unclear elomatess (including lophophorates), and did not support a wayy in lophophorates, and thus branch off from protostomes monophyleticc Eucoelomata and a linear, progressive phylobyy way of the latter" (1959, p. 605), although Hyman does not geneticc series according to body cavity organization. Neversupplyy any information as to how this link may be conceived. theless,, the 27 year time span between the first and the last Thiss may be the only real support from Hyman for the tradi- volumee of The Invertebrates obviously provided enough tionall textbook phylogeny. Strikingly, in the same volume roomm for a creative thinker such as Hyman to change her Hymann argued that chaetognaths may have diverged early viewss and explore different alternatives. It may be difficult to fromm die common ancestor of the Bilateria at die time that the interprett Hyman's phylogenetic views precisely since the dipleurulaa ancestor of the deuterostomes became differenti- theoryy and practice of phylogenetics have changed so proatedd (1959, p. 66). This again points to the independence of foundlyy since her time. Representing Hyman's view in a clathee protostome and deuterostome lineages since their last dogramm (e.g., Eemisse et al. 1992; Adoutte et al. 1999) can commonn acoelomate ancestor, and is in obvious contrast to thereforee never encompass the full subtlety of her perspective becausee cladistics cannot easily accommodate die central pothee traditionally presented "Hymanian" phylogeny. Howw well does Hyman's work support the traditional sitionn for direct ancestors such as die planuloid and acoeloid acoelomate-pseudocoelomate-coelomatee series as a story of ancestors,, which would be needed for an accurate representalinearr progressive increase in complexity (Balavoine and tionn of historical information. Acceptingg the traditional textbook tree as an impoverished Adouttee 1998; Adoutte et al. 1999; Valentine et al. 1999)? Hymann was convinced of the branching nature of evolution, historicall abstraction, and given the absence of a detailed andd quite in contrast to our current penchant for relying on consensuss of animal phylogeny on the basis of morphology, dichotomouslyy branching diagrams, she conceived of many manyy biologists have turned to molecular systematics in groupss of bilaterians as arising at the same level, thus creat- searchh of a phylogenetic framework. ingg polychotomies (1940, p. 39, Fig. 5). She emphasized the bush-likee branching of the animal evolutionary tree, arguing againstt a linear phylogenetic arrangement of organisms ac- MOLECULARR PHYLOGENY AND ANIMAL cordingg to their structural complexity (1940, p. 39). Thus, in EVOLUTION:: THE "NEW VIEW" Hyman'ss exegesis we cannot trace a conscious intellectual biass to impose notions of necessary evolutionary progress in Molecularr phylogenetics is currently dominated by the study complexityy on her views of animal phylogeny. When Hyman off 18S rRNA/DNA sequences. This research has yielded a 79 9 consensuss phytogeny, albeit of limited resolution (e.g., Aguinaldoo et al. 1997; Aguinaldo and Late 1998; Balavoine 1998;; Balavoine and Adoutte 1998; Maley and Marshall 1998;; McHugh 1998; Garey and Schmidt-Rhaesa 1998; Halanychh 1998; Winnepenninckx et al. 1998a; Adoutte et al. 1999;; Knoll and Carroll 1999). This consensus proposes threee major bilaterian clades. The first split divides the deuterostomess and protostomes, with protostomes consisting of thee sister clades Lophotrochozoa and Ecdysozoa. The deuterostomess are the echinodenns, hemichordates, and chordates.. Lophotrochozoa comprises groups such as molluscs, annelids,, platyhelmindis, rotifers, phoronids, bryozoans, and brachiopods;; Ecdysozoa unites molting animals such as arthropods,, tardigrades, and nematodes. The Acoela may be basall bilaterians (Ruiz-Trilloet al. 1999), although data from elongationn factor I-a suggest they are lophotrochozoans (Bemeyy et al. 1999). The relationships within the three main cladess of the Bilateria are especially unresolved. Causes for thee lack of resolution are discussed elsewhere (e.g., Lecointree et al. 1993; Phillipe et al. 1994; Abouheif et al. 1998; McHughh 1998; Foster and Hickey 1999). Not all analyses agreee in all aspects. A few analyses yield a paraphyletic Protostomiaa uniting deuterostomes either with ecdysozoans or lophotrochozoanss (see Eemisse 1997; Winnepenninckx et al.. 1998a; Zrzavy et al. 1998 for recent examples). Thee icon of the new view of animal phytogeny depicts the threee bilaterian clades (Lophotrochozoa, Ecdysozoa, Deuterostomia)) as polytomies of very limited membership, virtuallyy never depicting all the relevant taxa (Aguinaldo and Lakee 1998; Balavoine 1998; Balavoine and Adoutte 1998; Adouttee et al. 1999; Knoll and Carroll 1999). Of course, this modee of representation should be regarded as a convenient shorthand,, illustrating the uncertainty of the phylogenetic relationshipss in a cladogram of manageable size, whereas in olderr studies these incomplete trees reflect limited availabilityy of sequence data. However, I will show that these incompletee and unresolved trees are being taken too literally as representationss of our new understanding of animal evolution in aa significant proportion of these papers. Strikingly, these limitationss now form integral parts of recently proposed scenarioss of animal body plan evolution, two of which will be discussedd in detail: the evolution of the platyhelminth body plan,, and the evolution of primary larvae and set-aside cells. AA properly expanded molecular phytogeny including all pertinentt taxaformsthe basis of the following re-evaluation. PLATYHELMINTHSS AS DERIVED COELOMATES Balavoinee (1997,1998) investigated the phylogenetic positionn of the phylum Platyhelminthes on die basis of limited 18SS rRNA and Hox gene data. He proposed that these data favorr the grouping of plaryhelminths with die coelomate spi- raliann protostomes. The 18S rRNA data slightly favor a groupingg of rhabditophoran platyhelmindis (acoelomorphs aree excluded) witii lophotrochozoans as opposed to a positionn basal to either the Bilateria or all die protostomes. Balavoine'ss use of Hox gene data is innovative and potentially providess independent support for a deep split between lophotrochozoanss (including platyhelmindis) and ecdysozoans (seee also De Rosa et al. 1999; Kobayashi et aL 1999). Balavoinee then considered the question of die origin of thee platyhelminth body plan in light of this new phylogenetic data.. Balavoine argued that me platyhelmindis tost die anus, coelom,, and probably segmentation on the basis of what he summarizedd in his Fig. 3 (reproduced here as Fig. la and lc). Hee provided an evolutionary scenario based on heterochrony (orogenesis)) to account for the origin of the platyhelminth organization.. This is an interesting hypowesis, but is it well supported?? Comprehensive use of available data necessitates aa strikingly different alternative. Thee cladograms presented in Balavoine (1997, 1998) are cladogramss of bilaterian coetomates only. Applying die dubiouss principle "common is primitive" Balavoine states, "Most off them are coetomates, which of course, can be best explained byy die fact mat die ancestor was already a coelomate" (1998, p.. 854). We might accept diis conclusion if there was a sufficientlyy broad sampling of ana, in particular Üiose taxa lacking aa coelom. Unfortunately, Balavoine's (1998) cladogram is highlyy pruned, lacking all aschelmindis, and quite unresolved. Nevertheless,, Balavoine effectively used bom die lack of all pertinentt taxa and die lack of resolution of the cladograms to buildd his argument Using pruned, unresolved trees in this way iss empirically inadequate and mediodotogically flawed. If we wantt to make any sensible inferences about die evolution of animall body plans, a first requisite is to take all pertinent taxa intoo consideration in order to allow die proper estimation of characterr distribution, i.e., to provide a comprehensive focus. Notwithstanding,, too often audiors rely on incomplete trees thatt do not allow any meaningful evolutionary hypodieses to bee proposed (Jenner 1999). If we consider die fullness of die metazoann phytogeny, eidier derived from morphology or molecules,, the picture could change drastically. Lett us test Balavoine's conclusions (loss of anus, coelom, segmentation)) in the light of a more complete consideration off 18S rDNA phytogenies. The cladogram depicted in Figs, lb,, Id, and 3c will serve as the basis for die discussions in miss paper. It represents a conservative consensus estimate of diee I8S rDNA phytogeny based chiefly on recent comprehensivee studies (Eemisse, 1997; Littlewood et al. 1998. 1999;; Winnepenninckx et al. 1998b; Zrzavy et aL, 1998; Ruiz-Trilloo et al. 1999). For simplicity I consider the diploblastss (poriferans, placozoans, cnidarians, and ctenophores) ass a sister clade to the Bilateria. The Acoela are not included inn die cladogram. These simplifications do not affect die validityy of die reinterpretations. 80 0 Coelom m I absent present t = ii equivocal II Segmentation n I absent present ^^33 equivocal II Fig.. 1. Cladogram from Balavoine (1998) (a. c) and a conservative consensus dadogram of metazoan relationships based on lfSSrDNA sequencee data (b, d).with mapping of coelom (a. b), and segmentation (c,d). Consensus cladogram based on Eernisse (1997); Littlewood ell al. (1998.1999): Winnepenninckx et al. (1998b); Zrzavy et al. (1998); Ruiz-Trillo et al. (1999). "Other ecdysozoans" comprises an unresolvedd assscmblage of nematodes, nematomorphs. priapulids. kinorhynchs, and "other lophotrochozoans" is an unresolved clade of coelomatee protostomes including lophophoratcs, nemerteans. and entoprocts. AA variety of molecular phylogenetic studies published beforee Balavoine's papers indicated that various aschelminth orr pseudocoelomate phyla are likely to be closely associated withh the lophotrochozoans and ecdysozoans (e.g., Winne- penninckxx et al. 1995; Garey et al. 1996a, 1996b; Hanelt et al.. 1996; Aguinaldo et al. 1997; Eemisse 1997). Recent studiess confirm this picture (e.g., Aleshin et al. 1998; Garey and Schmidt-Rhaesaa 1998; Littlewood et al. 1998, 1999;Schmidt- 81 1 Rhaesaa et al. 1998; Winnepenninckx et al. 1998a; Zrzavy et iss the possible change in perspective concomitant with a al.. 1998; Ruiz-Trillo et al. 1999). If we regard die anus of bi- broaderr sampling ofrelevanttaxa. I do not propose to solve laterianss as homologous, we could conclude with some con- thee issue of die origin and evolution of coeloms in the Bilatfidencefidence that platyhebnindis have lost their anus, agreeing eriaa in this paper by the sole criterion of parsimony. Detailed withh Balavoine's conclusion. However, Balavoine's hypoth- considerationn of the morphology, ontogeny, and function of esiss of the presence of a coelom in the ground pattern (the set coelomss is, of course, necessary for a proper understanding off characters primitively present in a cladc) of the Bilateria off coelom evolution, but such treatment is outside the scope andd subsequent loss of the coelom in platyhelminths is con- off this paper and largely irrelevant for the main message of tradictedd by current information (Fig. lb). In plotting occur- thiss reinterpretation. rencess of a coelom on his cladogram, Balavoine provided no Furthermore,, Balavoine concluded that segmentation is definitionn of a coelom. He discussed neither the divergent mostt probably ancestral for bilaterians. Balavoine gives no morphologies,, nor the various developmental modes or func- definitionn for segmentation, although his tree (Fig. lc) sugtionss of coeloms in sufficient detail. Judging from Bala- gestss a very broad definition probably referring to anteroposvoine'ss mapping of coeloms in Fig. la, he adopted an indis- teriorlyy repeated mesodermal derivatives such as coeloms or criminatee structural definition of a coelom, irrespective of musculature.. However, the distribution of segmentation in ontogenyy or function (i.e., mesoderm lined body cavity, Niel- Balavoine'ss tree (Fig. lc) is misleading given current insenn 1995), although this does not explain why nemerteans sights.. There is mounting molecular (Black et al. 1997; aree not scored, since their circulatory system (Turbeville 1986) Kojimaa 1998; McHugh 1997, 1999; but see Siddall et al. andd rhynchocoel (Turbeville and Ruppert 1985) answer such 1998)) and morphological evidence (Bartolomaeus 1995, aa definition of a coelom. The conservative 18S rDNA phy- 1998;; Meyer and Bartolomaeus 1996; Rouse and Fauchald + that pogonophores are derived polychaetes, equating togenytogeny shows that Gastrotricha, Cycliophora, and Rotifera1997)) Acanthocephalaa are closely associated with rhabditophoran theirr segmentation with that of annelids. Segmentation of platyhelminths,, and either the Gastrotricha alone orr the three molluscss is very dubious and the molluscan ground pattern taxaa together form a sister clade to the remaining lophotro- doess certainly not include a situation comparable in structure e chozoans.. The Gnathostomulida may also be associated with orr ontogeny to the segmented coelomic cavities found in anthesee three taxa, or with the ecdysozoans. Published compre- nelidss (e.g., Salvini-Plawen 1990; Haszprunar 1996). Seghensivee 18S rDNA analyses suggest independent evolution mentationn in deuterostomes is morphologically and ontogeoff the coelom in the deuterostomes, the lophotrochozoans, neticallyy distinct from protostome segmentation and it is andd ecdysozoans as the most parsimonious solution (Fig. onlyy by virtue of the unresolved relationships in Balavoine's 11 b). Consequently, character distribution suggests that platy- deuterostomee clade that segmentation can be regarded as helminthss never lost their coelom, nor did the other basal primitivee for deuterostomes. Nevertheless, adopting an equally noncoelomates.. This interpretation corroborates the lack of indiscriminatee definition of segmentation as Balavoine and evidencee for a coelom from platyhelminth embryology and provisionallyy accepting segmentation in the ground pattern morphology.. Balavoine's conclusion is clearly dictated by off "other lophotrochozoans," Fig. Id indicates that (at least consideringg highly incomplete trees, lacking virtually all the rhabditophoran)) platyhelminths are likely basal to annelids importantt pseudocoelomate taxa. If loss and gain of a co- andd molluscs (grouped in "other lophotrochozoans"), indielomm are considered equally likely, convergent evolution of catingg the primitive absence of segmentation in platyhelaa coelom is the most parsimonious solution (Fig. lb). It minths. . shouldd be noted that Fig. lb maximizes the probability of Inn addition, Balavoine claimed support for the homology findingfinding homologous coeloms. No distinction is made onoff thesegmentation across all phyla from recent work on segbasiss of morphology, ontogeny or function, adopting a purely ment-polarityy genes and pair-rule genes. However, this argustructurall definition of a compartment between epidermis mentt is unconvincing. The demonstration of the role of these andd gut, and lined widi a mesothelium (Ruppert 1991). If the geness in the elaboration of a segmented body plan in amnoncoelomatee ecdysozoans and lophotrochozoans do not phioxuss and Drosophila is no straightforward argument supformm sister taxa of the panarthropods and the other (mainly portingg homology of chordate and arthropod segmentation coelomate)) lophotrochozoans, respectively, men the likeli- (e.g.,, Jenner 1999). Moreover, Balavoine does not supply hoodd of convergence of coeloms increases. The coelomate anyy information on their presence or function in platyhelchaetognathss can at this moment not be positioned with minths,, while his argument hinges upon the one-to-one mapcertainty,, although the recent proposals of a relationship ei- pingg of the presence of these genes with die presence of mortherr with panarthropods (Zrzavy et al. 1998) or nematodes phologicall segmentation. There is mounting evidence from (Halanychh 1996; Eernisse 1997) will not influence the map- developmentall genetics that this premise is very questionpingg of a coelom as depicted in Fig. lb. It needs to be empha- able,, and that the potency of using isolated gene expression sized,, however, that the salient point of mis reinterpretab'on patternss to illuminate morphological homology can be seri- 82 2 ouslyy limited, especially in distantly related taxa (e.g., Davidsonn 1997; Scholtz et al. 1998; Holland and Holland 1999; Janiess and DeSalle 1999). Inn summary, Balavoine's conclusions that platyhelminths aree derived coelomates that lost the coelom and segmentationn cannot be upheld. His pruned and unresolved phytogeny bearss at best ambiguous testimony, while a proper considerationn of morphology in the context of molecular phytogeny arguess against his hypothesis. Instead, multiple convergencess of coelom and segmentation are indicated. Finally,, Balavoine's interesting heterochronic scenario forr the origin of platyhelminths is effectively proposing processs where pattern is lacking. Balavoine (1997) stated that ".... the Muller larva of polyclads is, in some traits, reminiscentt of the trochophore of annelids and molluscs, which may indicatee that the possession of a trochophore-like larva is ancestrall in a (platyhelminths + eutrochozoans) clade" (p. 92).. He also suggested homology of nemertean pilidium and polycladd Müller's or Götte's larva, following the argument off Nielsen (1995). Balavoine (1998) then proposed a progeneticc series beginning with an annelid-like ancestor with a trochophoree larva, through a nemertean intermediate with aa pilidium larva, and culminating in a platyhelminth with a Müller'ss or Götte's larva. Balavoine (1998) stated that the progeneticc origin of platyhelminths *'... always seemed to be aa 'nice story'... but it is not readily testable" (p. 856). Indeed,, testing progenesis as a causal evolutionary process is difficult,, but die first step can already be taken by rigorously applyingg available phylogenetic information, which will necessitatee a reinterpretation on two levels. First,, we need to ascertain that Müller's or Götte's larvae andd pilidium larvae are homologous, and primitive for the platyhelminthss and nemerteans, respectively. Conceding sufficientt special morphological similarities to warrant initial homologyy of polyclad and pilidium larvae (but see Salvini-Plawenn 1980; Rouse 1999), can we consider these larval types primitivee for these taxa? There is general consensus that the polycladd Müller's and Götte's larvae, and die nemertean pilidiumm larvae, are not present in die ground pattern of the two phylaa (Haszprunar et al. 1995; Nielsen 1995,1998). Morphologicall and molecular phylogenetic studies support diis conclusionn in die platyhelmindis (e.g., Carranza et al. 1997; Camposs etal. 1998; Littlewoodetal. 1999; Ruiz-Trilloetal. 1999), whereass a phytogeny for the Nemertea is not yet available, allowingg only a tentative conclusion (Henry and Martindale 1997).. However, pilidium larvae are restricted to some ancplann species only. Paradoxically, Nielsen (1995) united platyhelminthss and nemerteans as Parenchymia on die basis of proposedd similarities in polyclad and pilidium larvae, while realizingg that these larval types are not likely to be ancestral forr these phyla, and clearly his adherence to the trochaea theoryy is responsible for this conclusion. Support from Nielsen (1995)) for Balavoine's hypothesis is therefore suspect. Second,, the evolutionary branching order of the annelids, nemerteans,, and platyhelminths needs to be consistent with Balavoine'ss progenetic series if annelids and nemerteans are too exemplify precursors in a series of evolutionary transitions.. It is only by virtue of die lack of resolution in his cladogramm that Balavoine can propose his speculative scenario. Nonee of die current molecular and morphological studies clearlyy indicate a phylogenetic position for annelids and nemerteanss as steps in an evolutionary series culminating in platyhelminthss (see Figs, lb and Id). It is more probable tint diee trochophore larva evolved in a more restricted set of taxa afterr platyhelminths split off, a hypothesis supported by Rousee (1999), while pilidium and polyclad larvae are derivedrived within Nemertea and Platyhelminthes, respectively. Somee 22 years ago, Gould warned about die speculative invocationn of heterochronic mechanisms to explain the originn of higher taxa: "It is unfortunate that most literature on paedomorphosiss is cast in the same mold diat bolstered recapitulationn during the previous half century—speculative phytogenyy of higher taxa" (p. 277) (Gould 1977). Heterochronyy is a powerful concept to understand evolutionary changess in animal form (e.g., McNamara 1995). Although heterochronicc processes have been proposed to account for thee origin of many higher level animal taxa, from mystacocaridd crustaceans to larvacean urochordates, a properly specifiedd phylogenetic framework is essential to determine die ancestrall and descendant states, and therefore a properly resolvedd phytogeny can serve as an efficient test for a heterochronicc scenario. SET-ASIDEE CELLS AS A MECHANISTIC EXPLANATIONN OF THE CAMBRIAN EXPLOSION Thee set-aside cell hypothesis developed by Davidson and colleaguess (Davidson 1991; Davidson et al. 1995; Peterson ett al. 1997; Cameron et al. 1998; Arcnas-Mena et al. 1998) hass been regarded as an important advance in our current understandingg of animal body plan evolution (Hall 1999; Knoll andd Carroll 1999; Olsson and Hall 1999). It addresses the controversiall subject of die origin and evolution of animal lifee cycles (e.g., Strathmann 1993; Strathmann and Eemisse 1994;; Haszprunar etal. 1995; Hart etal. 1997; Nielsen 1998; Pechenikk 1999). The core argument of mis elegant scenario iss an ingenious synthesis of descriptive and molecular embryology,, metazoan phytogeny, and the fossil record The hypothesiss can be regarded as an explanation for the absence off a pre-Ediacaran metazoan fossil record, almough it is rootedd in negative evidence, and it may be a viable hypothe-siss explaining die origin and diversification of large bilateriann body plans (Vermeij 1996; Wray et al. 1996; Conway Morriss 1997; Erwin 1999; Lieberman 1999; Smith 1999). Thee central points of the scenario are: a biphasic life cycle 83 3 withh primary larvae and maximal indirect development (i.e., embryonicc [zygote to embryo/larva] and postembryonic [larvaa to adult] stages of the life cycle are completely separablee both in terms of morphology [larval cells vs. set-aside cells]] and developmental process [Type I embryogenesis vs. patternn formation]) is primitive for Bilateria; the bilaterian ancestorr is similar to a ciliated primary larva with a populationn of set-aside cells; and the rapid divergence of adult body planss (Cambrian explosion) from homologous larvae with homologouss set-aside cells. Too put the following analysis into perspective, I will brieflyy summarize pertinent discussions of the set-aside cell hypothesiss in the literature. Critiques of the set-aside cell hypothesiss can be arranged along four lines dependent on the chosenn perspective: convergence of adult body plans; adaptationistt reasoning; correlation of reproductive traits; and distributionn of developmental types within the Metazoa. Liebermann (1999) and Smith (1999) considered the unlikelihoodd of the synchronous, independent evolution of many macroscopic,, adult body plans during the Cambrian explosion ass the biggest stumbling block of the hypothesis. This appears too be an important caveat, but at present we have no establishedd criteria forjudging the amount of expected convergence inn animal evolution, although convergent evolution may be prominentt in invertebrates (Moore and Willmer 1997). Lacallii (1997) and Wolpert (1999) used adaptationist reasoningg as the basis for their critiques. Lacalli (1997) argued thaii evolution should favor rapid development over slow development,, for example, to decrease predator pressure. The needd to maximize the rate of development should favor the evolutionn ofrigidmodes of developmentfrommore flexible antecedents,, making it likely that the developmental processess forming the larva (Type I embryogenesis) have been secondarilyy imposed upon pre-existing, more flexible patternn formation processes (forming the adult), although this doess not explain why these primitive and supposedly slower developmentall processes evolved in the first place. Wolpert (1999)) argued that every evolutionary transition must be graduall and adaptive. The evolutionary origin of set-aside celtss would then be insurmountable, because what could havee constituted the selective advantage of these cells before thee adult stage that they would eventually give rise to had evolved?? Although these criticisms may appear logical, they aree difficult to test. I think Lacalli (1997) only shifts the problem,, while Wolpert (1999) does not make the distinction betweenn historical origin of a feature and its current utility, a distinctionn that holds the key to some evolutionary riddles andd that cannot be discounted in principle (Gould and Lewontinn 1979; Gould and Vrba 1982). Although it may be difficultt to reconstruct the evolutionary origin of set-aside cellss with respect to their current function, set-aside cells mightt turn out to be the most significant exaptation in the historyy of the Metazoa. Conwayy Morris (1998a, 1998c) argued against the primacyy of maximal indirect development on the basis of known correlationss between reproductive traits in marine invertebrates.. Indirect development is virtually restricted to largebodiedd invertebrates (Olive 1985), and this would argue againstt the likelihood of a small indirectly developing bilaterianrian ancestor. I do not consider this to be an effective argu mentt since the set-aside cell hypothesis proposes a bilaterian ancestorr reminiscent of a larva that itself represents die adult stage,, thus exhibiting direct development (see discussion below).. The subsequent evolution of a biphasic life cycle could bee linked with the origin of a large-bodied, new, adult stage. Conwayy Morris (1998a, 1998b, 1998c) and Wolpert (1999)) argued mat direct development may be primitive for metazoanss based on the study of living taxa, in large measure derivingg supportfromthe work of Haszprunar et aL (1995). However,, the principal message in Haszprunar et al. (1995) iss not that direct development is likely to be primitive for the Bilateria,, but rather that a biphasic life cycle with planktotrophicc larvae is not likely to be plesiomorphic for the Bilateria.. Indirect development with Iecithotrophic larvae remainss a viable option for the original bilaterian life cycle. Moreover,, since Haszprunar et al. (1995) do not provide a phylogeneticc framework for their comparison of animal life cycles,, I do not regard this study to be effective as an argumentt against the presence of indirect development in the primitivee bilaterian life cycle. Similarly, Conway Morris' (1998a,, 1998b, 1998c) and Wolpert's (1999) claim for supportt for an original metazoan life cycle with direct developmentt deduced from the proposed presence of various directly developingg fossil metazoans in the Cambrian (Bengtson and Yuee 1997) cannot be convincing since alternative modes of development,, including direct and indirect development, are widespreadd within the living phyla (e.g., Nielsen 1998). A moree effective argument would have to rest on comparisons withinn a phylogenetic framework of the Metazoa, allowing a robustt assessment of plesiomorphic and apomorphic characterr states. Thee hypothesis claims that a biphasic life cycle with maximall indirect development is primitive for Bilateria. This necessitatess the evolution from essential direct development (forr the bilaterian ancestor resembled a reproductively mature larva-likee organism) to maximal indirect development with a separatee larva and adult bearing no morphological resemblancee at the base of the Bilateria. This hypothesis is only testablee by a phylogenetic study when the out-groups suggest directt development as primitive at the out-group node, and thee in-group suggests indirect development as primitive for thee in-group node, thereby enabling an evolutionary change att the intemode basal to the Bilateria (Fig. 2). Note that we are thenn dealing with two ancestors. This would better accommodatee the evolution of set-aside cells, because we can circumventt contradictory characters in one ancestor (at the same 84 4 Outgroupf») ) nott the reverse," because this direction of evolution is frequentlyy observed within phyla. So they write about"... the \\ \ Bilateria premisee that [maximal indirect development] represents the ancestrall mode by which adult body plans are ontogeneticallyy produced." Cameron et aL (1998, p. 615) conclude that, // ^ » maximal indirect "Thee important point is that the process of indirect developdevelopment // menttfroma ciliated larva, which itself bears little or no relationn in structure to the adult body plan to which it will give rise,rise, is a character shared by the majority of animal phyla. ^directt Therefore,, we postulate that the latest common ancestor of development t bilaterianss minimally had a larval stage similar to what is foundd in modern indirectly developing marine organisms.** Iff higher level phylogenetic research is to have any indeFig.. Z. Cladogram illustrating the phylogenetic «interpretation of directt and maximal indirect development in the ground pattern of pendentt status as a potential source of insight into evolutionthee Bilateria. Note that there are two distinct ancestors, represent- aryy processes, we have to berigorousin analyzing pattern. In edd by two intemodes. See text for discussion. thiss context, a consideration of die acoelomate and pseudocoelomatee bilaterians is necessary. Aschelminths, for example,, have direct development, completely lacking primary timee the larva is the adult and there is maximal indirect devel- ciliatedd larvae and set-aside cells that give rise to the adult stage.. As discussed above, 18S rDNA data indicate basal poopmentt with a maximally different larva and adult). Lett us examine the central points of this hypothesis in de- sitionss in the bilaterian clade of various directly developing tail.. First, we must determine the phylogenetic level at which groupss (Fig. 3c). Therefore, it would appear that primary larthee set-aside cell scenario is said to be effective. Davidson ct vaee are not homologous in the Bilateria, and the evolution of al.. (1995) and Peterson et al. (1997) proposed to explain the set-asidee cells is convergent It should be noted that the phydiversificationn of the Bilateria, although their cladograms logeneticc positions of the directly developing Acoela and the excludee most of the non-coelomate directly developing problematicc ctenophores and placozoans will be crucial for a aschelminthss (Figs. 3a and 3b). It should be noted that with- properr resolution. outt sufficient attention to noncoclomate bilaterians there is a Davidsonn et al. (1995) and Peterson et al. (1997) seal their problemm to pinpoint the exact clade under discussion. (For argumentt by discussing the arthropods and chordates as diinstance,, Conway Morris [1998a, 1998b], Hall [1999], and rectlyy developing exceptions to the general dominance of Olssonn and Hall [1999] regard the hypothesis as explaining maximall indirect development Both groups are characterizedd by the loss of larval characters present in closely related thee origin of the Metazoa.) Thee scenario hinges on die assumption that "maximal in- taxa.. Molecular systematics, however, suggests an interestdirectt development" is primitive for Bilateria, and monopha- ingg alternative. According to 18S rDNA information the sicc life cycles with direct development (absence of a primary Chordataa (Urochordata, Cephalochordata, and Vertebrata) larva)) are thought to be derived within the Bilateria. To but- mostt likely are the sister group to the Enteropneusta 4- Pterotresss this conclusion, Davidson et al. (1995) and Peterson et branchiaa + Echinodermata (Turbeville et al. 1994; Halanych al.. (1997) provided two phytogenies, Figs. 3a and 3b, with a a 1995;; Eemisse 1997; Littlewood et al. 1998; Wada 1998; mappingg of maximal indirect development. Neither of these Winnepenninckxx et al. 1998a; Zrzavy et al. 1998; Bromham cladogramss allow the primitive developmental mode of the andd Degnan 1999). A A dipleurula type larva then is an autapoBilateriaa to be deduced with certainty. Moreover, the likeli- morphyy of the hemichordate/echmoderm clade, indicating hoodd for maximal indirect development in the bilaterian thatt chordates and deuterostomes may in fact be primitively groundd pattern decreases when the previously discussed ca- directt developers. When confirmed, this may have important veatss for indirect development in platyhelminths and nem- consequencess for recent hypotheses deriving the chordate erteanss is considered. In addition, the provided phytogenies bodyy plan with reference to enteropneust anatomy (e.g., aree heavily pruned, leaving out all direct developing "minor" NObler-Jungg and Arendt 1999; Ruppert et al. 1999) or larval bilateriann phyla, except Nematoda (Fig. 3a), or Rotifera (Fig. morphologyy (Lacalli 1994; Salvini-Plawen 1998; Nielsen 1999). . 3b).. Understanding the phylogenetic positions of these excludedd taxa is crucial if the goal is the reconstruction of the ancestrall mode of bilaterian development Rather dian givingg a detailed justification for their premise, Davidson et al. (1995,, p. 1320) state: "We are convinced that the direction off the transition is from indirect to direct development and Arthropodss fall within the ecdysozoan clade. All ecdysozoanss lack classic primary larvae and indirect development Studyingg die distribution of indirect development on the consensuss 18S rDNA phytogeny (Fig. 3c) reveals the possibility thatt lack of larvae in chordates and arthropods (as well as the 85 5 Maximall indirect d e v e l o p m e n t II I absent present F ^^ equivocal Fig.. 3. Cladogram from Davidson el at. (1995) (a); Peterson et al. (1997) (b); 18S rDNA consensus cladogram (c), with mapping of maximall indirect development. basall ecdysozoans and lophotrochozoans) is primitive. In this maximall indirect development, and the independent evolution schemee indirect development and set-aside cells would have off set-aside cells in arthropods. These conclusions corroborate evolvedd multiple times in parallel, e.g., in various lophotro- andd extend the suggestion by Valentine et al. (1999) that setchozoanss such as cycliophorans, platyhelminths, nemerteans, asidee cells may not be homologous across the Bilateria. Appliandd the coelomate lophotrochozoans, and in hemichordates cation,, therefore, of set-aside cells as a mechanism to explain andd echinoderms. Presence of set-aside cells in the directly de- thee Cambrian explosion should be regarded with caution. The velopingg arthropods (e.g., imaginal discs, teloblasts, and de- basall position of directly developing taxa without set-aside rivatives)rivatives) indicates decoupled evolution of set-aside cellscellss and in the Ecdysozoa and Lophotrochozoa indicates that in- 86 6 dependencyy evolved set-aside cells could have contributed to anss and lophotrochozoans. However, with current phylogethee radiation of distinct clades of macroscopic metazoans. The neticc information we cannot conclusively decide whether a radiationn of the various small-bodied basal taxa such as gas- biphasicc life cycle is primitive for the Bilateria. At least introtrichs,, rotifers, loriciferans, and Idnorhynchs probably oc- dependentt evolution of set-aside cells and larvae in deuterostomess and protostomes is indicated (Fig. 3c). The combinacurredd independently of set-aside cells. Doo primary larvae actually exist? Historically, the defini- tionn of Type I embryogenesis and later pattern-formation tionn of primary larvae was developed as a phylogenetic rather processess were probably already in place in the bilaterian anthann morphological concept Diagnosing a primary larva then cestor.. The modem basal noncoelomate bilaterians did not iss inferential, not direct observation. Francis Maitland Balfour loosee maximal indirect development and set-aside cells. Notwass perhaps the most devoted British recapitulationist of the withstanding,, the set-aside cell hypothesis has great heuristic 19thh century, who sought to explain everything about the na- valuee for evolutionary developmental biology when placed turee of larval forms by exclusive use of evolutionary argu- inn a proper phylogenetic framework. The study of the develments.. Accordingly, Balfour (1880, p. 383) defined primary opmentt of larvae and adults in terms of molecular developlarvaee as **... more or less modified ancestral forms, which mentall processes in various indirect developing deuterohavee continued uninterruptedly to develop as free larvae from stomess has already yielded very important insights into body thee time when rhey constituted the adult form of the species." plann formation (e.g., Arenas-Mena et al. 1998; Peterson et al. Moree recently, Gösta Jigersten (1972) in his influential book. 1999a,, 1999b). Nevertheless, detailed study of indirectly developingg EvolutionEvolution of the Metazoan Life Cycle: A Comprehensive The- protostomes and the relatively unknown directly ory,ory, similarly defined primary larvae as a phylogenetic con- developingg noncoelomates is much needed if our goal is to cept,, although not in die same recapitulationist mold as Bal- understandd the evolutionary origin and significance of setfour.. Jagersten (1972, p. 4) states that, "The qualification asidee cells across the Bilateria. 'primary'' thus neither refers to any special characters in the morphologyy of the larvae... nor to the degree ofcomplication off structure, but to the fact that the pelagic larval type has persistedd in ontogeny without interruption since its first appearance."" Therefore not surprisingly, Jagersten designates both crustaceann nauplii and sponge larvae as primary larvae despite veryy different morphologies. Without explicit morphological justification,, these definitions are linked with a particular view off metazoan phylogeny, and thus represent phylogenetic concepts.. Primary larvae can then only be recognized with referencee to a particular phylogeny. The specter of these phylogeneticc definitions is still present in the literature. In discussing thee phylogenetic position of the most recently discovered animall phylum, the Cycliophora, Fundi and Kristensen (1997) citee Jagersten (1972) to support their notion that the cycliophorann chordoid larva is a primary larva. Cameron et al. (1998)) cite Jagersten (1972) for arguing a priorii that direct developmentt is secondary, failing to recognize the nature of Jagersten'ss phylogenetic concepts. Zrzavy et al. (1998) use the presencee of a primary larva to sort animal relationships withoutt providing the necessary morphology-based definition, thus enteringg a phylogenetic concept as primary data into die reconstructionn of a phylogeny. It is therefore noteworthy mat Cameronn et al. (1998, p. 617) conclude in the Balfourian mode that,, "The larval forms of modern indirect developing marine speciess indicates to us the probable nature of these ancestral organismss [the ancestral bilatcrians], except mat they then constitutedd the terminal or adult stage of development Inn summary, the bilaterian ancestor did probably not resemblee a ciliated primary larva. More likely, this ancestor (at leastt the protostome ancestor) was at the organizational gradee of a noncoelomatc as suggested by the basal ecdysozo- Thesee two studies are not unique in evolutionary developmentall biology in that they can benefit from greater attention to thee phylogenetic basis of their conclusions. Problematic hypothesess of animal body plan evolution can be identified in a rangee of other recent studies, suffering from biased taxon samplingg and/or equivocal phylogenetic deductions. For example, wee can diagnose ambiguous inferences of ground pattern attributess in the bilaterian ancestor such as presence of a coekwn (e.g.,, in Balavoine and Adoutte 1998; Martindale and Henry 1998;; Adoutte et al. 1999; Knoll and Carroll 1999), die presence offenterocody based comisrepiesenting me conclusions ofValentinee (1997) (e.g., in Martindale and Henry 1998; Knoll and Carrolll 1999), the presence of "anterior tentacular appendages formedd by coelomic outpouching" (Knoll and Carroll 1999), diee presence of morphological seriation or metamerism (e.g., in Balavoinee 1997,1998; Adoutte et al. 1999; Holland and Hollandd 1999; Knoll and Carroll 1999), and the presence of antenniformm appendages in the protostome ancestor (e.g., in Panganibann et al. 1997; Tabin et al. 1999). Rigorous application of phylogeneticc information has yielded remarkable insights into animall evolution at lower taxonomie levels for diverse taxa and characterss (e.g., Heeg 1995; Sturmbauer et aL 1996; Lee and Shinee 1998; McHugh and Rouse 1998; Werdelin and Nilsonne 1999).. If studies on animal body plan evolution aim at a similar effectiveness,, phylogenetic information of higher level animal taxaa should be approached with appropriate care. CONCLUSIONS S Evolutionaryy developmental biology attempts to understand thee genesis and evolution of organismal design by compara- 87 7 tivee research, integrating information from disparate fields off biological and paleontological research. A proper phytogenyy is necessary because the interpretiveframeworkin many studiess of evolutionary developmental biology. The emergencee of a consensus on higher level metazoan relationships onn the basis of 18S rRNA/DNA sequence data has provided aa new framework for studying animal body plan evolution. Frequently,, papers contrast this new molecular view of animall evolution wim a traditional, morphology based perspective.. I explored the nature and historical basis of mis widely citedd traditional textbook tree, and provided an amended reinterpretationn that better reflects historical information. Nextt I discussed the newly emerging molecular view on higherr level animal relationships as a basis for studies of animall body plan evolution. Two recent studies, on the evolutionn of the platyhelminth body plan and on the evolutionary significancee of indirect development and set-aside cells, are thenn used to illustrate the danger of overlooking two aspects off the newly emerging molecular metazoan phylogeny depictedd in many recent papers: incompleteness and lack of resolution.. In addition, the need for rigorous phylogenetic reasoningg is stressed. Both case studies rely on phylogenies thatt exhibit a strong taxon selection bias for coelomate, indirectlyy developing bilaterians. In both instances, by ignoring pseudocoelomates,, the probability of recovering "linear" transformationn series and homology is maximized by maintainingg a maximum of connections between features in differentt taxa. Pseudocoelomates have been the classical locus off some of the most enduring disputes in comparative zoology,, namely the origin and evolution of body cavities and larvae.. The properly expanded new molecular view of animall evolution forcefully draws attention to the necessity to betterr incorporate the poorly understood bilaterians into our hypothesess of animal body plan evolution. methodologiess o f "telling die tree" remain standing, as illustrated byy the continued reference to their earlier papers for support o f their phylogeneticc interpretations. 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