Biological Macromolecules Introduction All organisms are composed of organic compounds. An understanding of some basic concepts of chemistry is necessary for an understanding of life. Four biochemical assays will be introduced in this exercise. These are qualitative assays—assays that simply test for the presence or absence of a substance. Objectives Having completed this lab, you should be able to 1. Conduct and interpret the results of biological molecule assays to determine the presence or absence of biological macromolecules. 2. Explain how and why positive and negative controls are used in biological molecule assays. Learning to Conduct and Interpret Results of the Biomolecule Assays Introduction In the study of living material, it is often necessary to determine if certain biological macromolecules are present in a sample. To do this, certain standard tests may be performed. The tests are qualitative not quantitative; however, the darkness of the reaction or the amount of precipitate often gives some general idea of the amount present. In this exercise, you will learn how to perform the four biochemical assays described above by analyzing the carbohydrate, protein and fat content of a series of six known samples: distilled water glucose solution Sucrose starch solution Albumin Vegetable Oil WSBCTC 1 using four of the assays (Benedict’s, Iodine, Biuret’s and Sudan III). This will provide you with the tools you will need for addressing research questions and designing experiments later in the course. Note: Before collecting data, you should create a data-recording table in your lab notebook to help you organize your thoughts and your efforts at the lab bench and to record your results in an easily understandable way in your notebook. Your goal here should be learning which assays are used to detect the various biological molecules and learning to read positive and negative results. Additionally, you should understand the purpose of using positive and negative controls in chemical assays. Materials 6 test tubes distilled water glucose solution Sucrose starch solution Albumin Vegetable Oil Iodine solution Benedict’s solution hot plate 400 mL beaker A lab notebook to record your observations Iodine Test 1. Set up six test tubes, mark each with a number, and add the following: o Tube 1: 5 mL of glucose solution o Tube 2: 5 mL of sucrose solution o Tube 3: 5 mL of starch solution WSBCTC 2 o Tube 4: 5 mL of albumin solution o Tube 5: 5 mL of vegetable oil o Tube 6: 5 mL of distilled water 2. Add 5 drops of Iodine solution to each test tube and observe. A positive result is indicated by a color change from orange to a blue-black color. 3. In your lab notebook record 1) your color observations and 2) your interpretation of results (i.e., Iodine test positive or negative). 4. Iodine solution gave a positive test for which solution(s)? 5. Deposit waste solutions in the collection jar for hazardous materials and clean test tubes. Benedict's Test 1. Make a boiling water bath by placing 150 mL of distilled water into a 400 mL beaker and heat on a hot plate. 2. Set up three test tubes, mark each with a number, and add the following: o Tube 1: 5 mL of glucose solution o Tube 2: 5 mL of sucrose solution o Tube 3: 5 mL of starch solution o Tube 4: 5 mL of albumin solution o Tube 5: 5 mL of vegetable oil o Tube 6: 5 mL of distilled water 3. To each test tube add 5 drops of Benedict’s solution, then heat the tubes in a boiling water bath for 2 minutes or until there is a color change. A positive result is indicated by a color change in the solution from blue to: green, yellow, orange or brown. The color is determined by the amount of glucose present. 4. In your lab notebook record 1) your color observations and 2) your interpretation of results (i.e., Benedict's positive or negative). 5. Benedict’s solution gave a positive test for which solution(s)? WSBCTC 3 Sudan III Test 1. Wearing latex or nitrile gloves to avoid fingerprints, get a disc of filter paper. Use a pencil (not a pen) to draw 6 equally-spaced circles and label them with the six known samples. Put your names on the filter paper. 2. Add one small drop (only) of the appropriate sample to its labeled circle. Make sure you use the pipette labeled for that sample to avoid cross-contamination between samples. 3. Put the paper in one half of a Petri dish and place under a lamp at your lab bench, allowing the samples to dry. 4. Once dry, (Note: The vegetable oil spot my never look completely dry) soak the paper in the Sudan III solution for 3 minutes. 5. Using forceps, carefully remove the paper from the stain and rinse the paper in a large beaker filled with distilled water. Rinse the paper for a longer time if no spots are visible (the paper retains excess dye). 6. In your lab notebook record 1) your color observations and 2) your interpretation of results (i.e., Sudan positive or negative). 7. Sudan III gave a positive test for which solution(s)? 8. Dispose of all the liquid waste in the labeled liquid chemical waste jar. Biuret Test 1. For each sample, transfer 2 ml of test solution into the appropriate test tube. 2. Add 5 drops of sodium hydroxide (NaOH) to each sample and mix thoroughly. 3. Add 5 drops of thoroughly. copper sulfate (CuSO 4) to each sample and again mix 4. In your lab notebook record 1) your color observations and 2) your interpretation of results (i.e., Biuret positive or negative). 5. The Biuret test was positive for which solution(s)? 6. Clean up when finished. Discard the liquid chemical waste into the liquid chemical waste jar. Then thoroughly clean the tubes at the sink. WSBCTC 4 Determining the Content of an Unknown Sample 1. Once you have learned how to conduct and interpret each of the assays, get an unknown sample from your instructor. 2. Record the letter of your unknown sample here and in your lab notebook. 3. Conduct the four assays to determine the contents of your unknown. 4. Record your results in your lab notebook and include an interpretation of your results. 5. Which biological macromolecule(s) were in your unknown sample? 6. Why was distilled water included in each of the tests? About this document ... Biological Macromolecules This document was generated using the LaTeX2HTML translator Version 2008 (1.71) Copyright © 1993, 1994, 1995, 1996, Nikos Drakos, Computer Based Learning Unit, University of Leeds. Copyright © 1997, 1998, 1999, Ross Moore, Mathematics Department, Macquarie University, Sydney. The command line arguments were: latex2html -split 0 OCLbiomolecules.tex The translation was initiated by Scott Rollins on 2011-07-22 WSBCTC 5
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