J. Microbiol. Biotechnol. (2011), 21(3), 236–242 doi: 10.4014/jmb.1009.09010 First published online 15 January 2011 Molecular Characterization of Cold-Inducible β-Galactosidase from Arthrobacter sp. ON14 Isolated from Antarctica Xu, Ke1,2†, Xixiang Tang1,2†, Yingbao Gai2, Muhammad Aamer Mehmood2‡, Xiang Xiao2,3, and Fengping Wang2,3* 1 School of Life Science, Xiamen University, Xiamen, 361005, P. R. China Key Laboratory of Marine Biogenetic Resources, Third Institute of Oceanography, State Oceanic Administration, Xiamen, 361005, P. R. China 3 Key Laboratory of MOE for Microbial Metabolism and School of Life Science and Biotechnology, State Key Laboratory of Ocean Engineering, Shanghai Jiao Tong University, Shanghai, 200240, P. R. China 2 Received: September 8, 2010 / Revised: November 21, 2010 / Accepted: November 22, 2010 A psychrotrophic bacterium, Arthrobacter sp. ON14, isolated from Antarctica, was shown to exhibit a high β-galactosidase activity at a low temperature. A genomic library of ON14 was constructed and screened for β-galactosidase genes on functional plates containing 5-bromo-4-chloro-3-indolylβ-D-galactopyranoside (X-gal) as the substrate. Two different β-galactosidase genes, named as galA, galB, were found in ON14. Computational analyses of the genes revealed that the encoded protein GalA belongs to family 2 of glycosyl hydrolysases and is a cold-active protein, whereas GalB belongs to family 42 of glycosyl hydrolysases and is a mesophilic protein. Reverse transcription analyses revealed that the expression of galA is highly induced at a low temperature (4oC) and repressed at a high temperature (28oC) when lactose is used as the sole carbon source. Conversely, the expression of galB is inhibited at a low temperature and induced at a high temperature. The purified GalA showed its peak activity at 15oC and pH 8. The mineral ions Na+, K+, Mg2+, and Mn2+ were identified as enzyme activators, whereas Ca2+ had no influence on the enzyme activity. An enzyme stability assay revealed that the activity of GalA is significantly decreased when it is incubated at 45oC for 2 h, and all its activity is lost when it is incubated at 50oC. Keywords: β-Galactosidase, cold inducible, Arthrobacter *Corresponding author Phone: +86-21-34207208; Fax: +86-21-34207205; E-mail: [email protected] † These authors contribute equally to this paper. ‡ Present work address: Department of Bioinformatics and Biotechnology, GC University, Faisalabad, Pakistan Low temperatures are the most pervading environmental factor of the Earth’s ecosystem. Psychrophilic and psychrotrophic microorganisms are able to thrive in the coldest environments on Earth and are the major source of cold-active enzymes that have attracted industrial interest [5]. β-Galactosidase (E.C. 3.2.1.23) is an enzyme that can hydrolyze lactose into glucose and galactose, making it important to the dairy industry, since it can be used to eliminate lactose from milk for people who are lactose intolerant, convert lactose to glucose to improve the sweetness of dairy products [14], and remove lactose as a dairy industry pollutant [19]. In particular, cold-active β-galactosidases have recently been attracting attention, as there is an increasing industrial trend to treat dairy products under mild conditions to avoid spoilage and changes in the taste and nutritional value, and cold-active β-galactosidases can be inactivated at a low temperature without heat treatment [12]. Based on hydrophobicity plots, amino acid sequence similarities, reaction mechanisms, and the alignment of possible common structural domains, β-galactosidases are subdivided into four different families:1, 2, 35, and 42 [7]. Cold-active β-galactosidases are mostly produced by psychrophiles, among which Arthrobacter is the most frequently isolated genus [11, 15]. Cold-active β-galactosidases have been purified and partially characterized since the 1990s, and most belong to glycosyl hydrolase family 2 [10, 11, 14, 15]. Until now, the coldest active β-galactosidase is BglA from Arthrobacter psychrolactophilus strain F2, with an optimum activity at 10oC [14]. Cold-active βgalactosidases are very important in the dairy industry, as they enable dairy products to be treated under mild conditions, in contrast to mesophilic β-galactosidases. 237 Xu et al. The current authors previously isolated several psychrotrophic/ psychrophilic bacteria from deep-sea and Antarctic environmental samples, and tested their enzyme-producing abilities (unpublished data). Among these strains, a psychrotrophic Arthrobacter strain ON14 was found to exhibit high βgalactosidase activity at a low temperature. Accordingly, the present study reports on the cloning of two βgalactosidase genes from ON14, and the further purification and characterization of the cold-active enzyme. Moreover, it is shown that ON14 can adjust its isozyme expression in response to changing temperatures. MATERIALS AND METHODS Bacterial Strains and Culture Conditions Arthrobacter sp. ON14 was isolated from a soil sample taken near the Great Wall Station in Antarctica (69o22'24''S, 76o22'40'') during the 19th Chinese Antarctic Research Expedition in 2002. The environmental samples were stored at -20oC during the shipping process and in the laboratory until used. A Luria-Bertani medium [1% tryptone (w/v), 0.5% yeast extract (w/v), and 1% NaCl (w/v), pH 7.4] and a M9 medium prepared using the method of Miller [13] with 0.6% (w/v) lactose were used for the cultivation. Cloning of β-Galactosidase Genes The genomic DNA of Arthrobacter sp. ON14 was extracted using a modified method of Brahamsha and Green [2], with the lysozyme concentration increased to 5 mg/ml and incubated at 37oC for 1 h. The isolated DNA was partially digested by Sau3AI and separated on a 0.7% (w/v) agarose gel. The DNA fragments of around 10 kb were excised and purified from the gel after electrophoresis and ligated into a BamHI pre-digested pSP73 (Promega) vector [9]. The clones were then plated on LB plates with ampicillin (100 µg/ml) and X-gal (20 mg/ml). The positive transformants demonstrating hydrolytic activity on the X-Gal (blue colonies) were isolated. The plasmids were extracted from these transformants and partially digested by Sau3AI and separated on a 1% (w/v) agarose gel. The DNA fragments of around 4 kb were then subcloned into BamHItreated pSP73 and plated on LB plates with ampicillin (100 µg/ml) and X-gal (20 mg/ml). The positive transformants demonstrating hydrolytic activity on the X-Gal (blue colonies) were isolated. The plasmids in the positive subclones were then sequenced using SP6 and T7RNA polymerase promoter-primers based on a walking strategy (Sangon Inc. Shanghai, China). Purification of Galactosidase-A An E. coli strain harboring the galA gene was grown in an LB broth supplemented with ampicillin (100 µg/ml) at 25oC until the OD600 reached 0.8-1.0. The cells were then harvested by centrifugation, suspended in a loading buffer (25 mM sodium phosphate buffer, pH 8.0), and disrupted by sonication (SONCIS Vibra-Cell, 10 min, 40 W, on ice). After lysis, the cell debris was removed using centrifugation at 8,000 ×g for 10 min. The proteins were then precipitated by adding 40% (NH4)2SO4. The precipitated proteins were collected by centrifugation at 10,000 ×g for 20 min and dialyzed against the same buffer to remove the salts. After dialysis, the supernatant was further purified using an ÄKTA FPLC system (Amersham). The DEAE- Sepharose column was prepared according to the instructions of the manufacturer (Pharmacia). The dialyzed solution was applied to the DEAE-Sepharose column (2.5×35 cm) equilibrated with the same buffer, and a flow rate of 1 ml/min was maintained. The unbound protein was washed with two bed-volumes of the starting buffer, and the enzyme eluted using a linear gradient of NaCl (210 to 390 mM) in a 20 mM Tris-HCl buffer (pH 8.0). The protein profile was monitored by measuring the absorbance at λ280 nm. The elutions exhibiting enzyme activity were pooled and concentrated by ultrafiltration using an Amicon ultracel-10K membrane (Amicon) to give a final volume of 0.5 ml. The concentrated proteins were further loaded onto a buffer-equilibrated Mono Q HR5/5 column (1 ml; Amersham) and washed using a linear gradient of 0-0.4 M NaCl in a 20 mM Tris-HCl buffer (pH 8.0) at a constant flow rate of 0.5 ml/min. The eluted proteins were then collected and the enzyme activity was measured under standard assay conditions. The purity of the enzyme was confirmed by SDS-PAGE, and the concentrations determined using the Bradford method [1]. Enzyme Assays The β-galactosidase activity was determined by measuring the rate of the hydrolysis of 10 mM O-nitrophenyl-β-D-galactopyranoside (ONPG) as the substrate, as described previously [18]. The specific activity was defined as the micromoles (µmoles) of ONP released per minute per milligram of the protein. The protein concentrations were determined using the Bradford method [1]. The standard curves were generated using bovine serum albumin. The apparent optimal reaction temperature of the purified enzyme was determined based on incubation in a 25 mM sodium phosphate buffer (pH 8.0) containing 2.2 mM ONPG for 10 min at temperatures ranging from 0 to 60oC. Meanwhile, the optimal pH of the enzyme was determined at 15oC in buffers with pHs ranging from 4.0 to 10. The buffers used were 0.1 M sodium acetate-acetic acid for pH 4.0 to 6.0, 0.1 M phosphate for pH 6.0 to 8.0, and 0.1 M potassium chloride-boric acid for pH 8.0 to 10. The thermostability of the enzyme was determined using the modified method of Coker et al. [3]. The enzyme was incubated at temperatures ranging from 30 to 50oC for up to 120 min, and the residual enzyme activity then immediately assayed under standard assay conditions. The impact of metal ions on the enzyme activity was studied in a 20 mM phosphate buffer (pH 8.0) supplemented with 5 mM of NaCl, KCl, MgCl2, CaCl2, MnCl2, ZnCL2, and CuCl2, respectively. The enzyme was incubated with 5 mM of each metal ion for 60 min at 15oC prior to performing the enzyme assay, and the residual activity was measured under standard conditions. All the experiments were performed in triplicate along with a control. Expression Profile of Galactosidases Arthrobacter sp. ON14 was incubated in a Luria-Bertani medium at 20oC until the OD600 reached 0.5-0.7. The cells were then collected by centrifugation at 5,000 ×g for 10 min (Beckman Avanti J-E), washed twice, and resuspended in a mineral synthetic medium [16] containing 0.6% (w/v) lactose as the sole carbon source. Thereafter, the cell suspension was incubated at 6, 20, or 28oC for 4 h. The total RNA was extracted as described previously[20]. The specific primer pairs [upstream primer 5'-CGGATCGGCGTGCGGCTGGACTT3'; downstream primer 5'-GCGGCCGGGCGTAGGGGACATTC-3') and (upstream primer 5'-GCGCGGCATCACGACGGACTTC-3'; downstream primer 5'-GGGTGGCGGCAGCAGCAATGTT-3')] were designed using Primer Express software (Applied Biosystems, San A β-GALACTOSIDASE FROM ARTHROBACTER SP. ON14 238 Francisco, CA, USA) and used for GalA and GalB, respectively. The real-time PCR was performed on a 7500 Real-time System (Applied Biosystems) in a 20-µl reaction mixture that consisted of 1 µl of DNA as the template, 0.15 µM of each primer, and 10 µl of AmpliTaq Supermix (Applied Biosystems, USA) with ROX and SYBR Green I. The amplification conditions were 10 min at 55oC; 2 min at 95oC; then 40 cycles consisting of 15 s at 95oC and 1 min at 60oC; followed by the plate read. The cycle threshold was set automatically using the 7500 system software, version 1.3 (Applied Biosystems). Skim Milk Assay The hydrolysis of lactose in milk was monitored by incubating around 200 µg of purified GalA in 1 ml of commercial skim milk [Inner Mongolia Meng Niu Dairy (Group) Co. Ltd, China] at 4oC for 8 h. The enzyme was inactivated by incubating at 60oC for 10 min and the proteins were precipitated by adding 5 ml of 5% trichloroacetic acid (TCA), plus 1.0 N NaOH was used to maintain the pH of the solution at between 6.0 and 8.0. After centrifuging at 15,000 ×g and 4oC for 30 min, the supernatant was used for HPLC analysis. An AKATA-purify 10 HPLC system equipped with a Carbo pac PA10 (4×250 mm) column (Pharmacia) was used, with 10 mM NaOH as the mobile phase at a flow rate of 1 ml/min. RESULTS Isolation of Strains Producing Cold-Active β-Galactosidase A variety of psychrotrophic and psychrophilic bacteria were previously isolated from Antarctic soil samples ([22] and unpublished data). When checking these strains for their enzyme-producing abilities at a low temperature (4oC), one strain named ON14 exhibited high galactosidase activity, as when the strain colonies were placed on a XGal plate, they turned blue at a low temperature (photo not shown). When the 16S rRNA gene sequence of ON14 was determined, it showed a high sequence identity with A. psychrochitiniphilus and A. psychrolactophilus. The phylogenetic relationship between ON14 and other related Arthrobacter reference strains is shown in Fig. 1. Cloning of β-Galactosidase Genes from ON14 A genomic library was constructed for ON14 with an average insert length of around 10 kb. The library contained around 7,000 clones, corresponding to a genomic length of around 70,000 kb and more than 14 times the genome of ON14 (assuming that the genome size of ON14 is 5Mb). A total of 8 β-galactosidase-producing clones (blue clones) were screened out from the library. The plasmids were then isolated from these clones and selected for further subcloning and a sequencing analysis, as described above. Gene Sequence Analysis and Preliminary Enzyme Characterization Two types of β-galactosidase genes were identified from the eight clone sequences, and named galA (3,090 bp) and Fig. 1. Phylogenetic tree showing the relationship of Arthrobacter sp. ON14 with related Arthrobacter species. galB (2,052 bp) (GenBank Accession No. HM178943 and HM178942 for galA and galB, respectively). The coding region of galA started with GTG, instead of the most common start codon ATG. The BLAST results for the amino acid sequence within the NCBI database showed that the GalA from ON14 had the highest similarity with BglA produced by Arthrobacter psychrolactophilus strain F2 (97.28% identity) [14]. Moreover, the ON14 GalA belonged to glycosyl hydrolysis family 2 (GH2 family), which has several conserved regions, including glutamic acid residues, a sugar-binding domain, an acid/base catalyst triosephosphate isomerase barrel domain, and the GH2 signature of the GH2 family (Fig. 2). Meanwhile, the BLAST results for the ON14 GalB amino acid sequence within the NCBI database showed that it had the highest identity (42.4%) with isozyme 12 of the psychrotrophic Arthrobacter strain B7 [6]. The GalB included two active-site residues (167 Trp and 172 Glu) in the acid-base region (aa157-aa197) and the specific conserved region (aa516-aa545) for members of the LacG family. Thus, the GalB was assigned as a member of the LacG family, which belongs to the glycosyl hydrolysis family 42 (GH42 family) [6, 8]. Effect of Temperature on Expression of β-Galactosidase Genes The expressions of galA and galB in ON14 at different temperatures were monitored using a Q-PCR, as described in the Materials and Methods. When ON14 was transferred from its optimal growth temperature (20oC) to a low temperature (6oC), the expression of galA was found to be increased about 6-fold, whereas the expression of galB was nearly completely inhibited (Fig. 3). Conversely, when ON14 was transferred to a higher temperature (28oC), the expression of galA was almost totally inhibited, whereas galB was found to be overexpressed nearly 2-fold when compared with that at the optimal temperature (Fig. 3). 239 Xu et al. Fig. 2. Multiple alignment of family 2 β-galactosidases from several Arthrobacter species. They consist of five domains: Domain1, GH family 2 sugar-binding domain; Domain 2, GH family 2 immunoglobulin-like beta-sandwich domains; Domain 3, GH family 2 TIM barrel domain; Domain 4, GH family 2 immunoglobulin-like beta-sandwich domain; Domain 5, β-galactosidase small chain. ON14GalA, GalA from Arthrobacter sp. ON14 in this study; F2-BglA, BglA from Arthrobacter sp. F2; C2-2, isoenzyme from Arthrobacter sp. C2-2; SB, isoenzyme from Arthrobacter sp. SB; B7-15, isoenzyme from Arthrobacter sp. B7-15. The black arrow indicats possible amino acids involved in thermal stability (Val-107, Ser-134, Thr-135, Thr-136, Ala-741 in ON14-GalA). ON14-GalA (GenBank Accession No. HM178943), F2-BglA (AB243756), C22(CAD29775), B7-15(U12334), SB(AAQ19029). Enzymatic Properties Crude enzyme extracts were first extracted from the clones containing the two β-galactosidase genes galA and galB, respectively. The optimal temperature for the GalA extract was found to be around 15oC (Fig. 4A). However, it retained 30% of its activity at 0%, started losing its activity above 15%, and yet still retained 50% of its activity at 40%, suggesting that GalA is a cold-active β-galactosidase and may have good thermal stability. Meanwhile, the GalB extract showed its peak activity at 37oC, and showed a very low activity at temperatures close to 10oC and 60oC (Fig. 4A), suggesting that GalB is a mesophilic β-galactosidase. The cold-inducible GalA was purified for further studies, owing to its possible application in the dairy industry. The protein was purified by FPLC using DEAE-Sepharose and Q-Sepharose, as summarized in Table 1. The SDS-PAGE analysis revealed that the molecular mass of the protein was close to 116 kDa (Fig. 5), which corresponded well with the calculated value (111,453 Da). The purified GalA also showed a similar reaction temperature range to that of the crude enzyme, with its peak activity at 15oC (Fig. 4A). In addition, the thermostability assay revealed that the enzyme retained 30% of its activity at 0oC, started losing its activity above 15%, and yet still retained 50% of its A β-GALACTOSIDASE FROM ARTHROBACTER SP. ON14 240 Fig. 3. Differential expression of β-galactosidase genes under different temperature inductions. The ON14 cells were incubated at 20oC, and then shifted to 6oC or 28oC for 4 h, respectively (as described in Materials and Methods). Then, the expressions of the galA and galB genes were monitored by Q-PCR. The expressions of the genes at 20oC were set as 1. activity at 40oC (Fig. 4B), confirming that GalA is a coldactive β-galactosidase. The ability of GalA to hydrolyze lactose in commercial skim milk at a low temperature was monitored, as described in the Materials and Methods. After incubating GalA in the skim milk at 4oC for 8 h, the lactose was completely digested into galactose and glucose (data not shown). The optimum pH for GalA was 8.0 and it exhibited above 75% activity at pHs ranging from 6.0 to 9.0 and even retained 70% of its activity at pH 10. When using ONPG as the substrate, the specific activity of the purified enzyme was shown to be 25.4 U/mg. The effects of different metal ions on the enzyme activity were also studied, and Na+, K+, Mg2+, and Mn2+ were found to have a positive effect on the enzyme activity of GalA. However, Zn2+ significantly reduced the enzyme activity, and Cu2+ completely inactivated the enzyme activity within 10 min (Table 2). DISCUSSION Cold-active β-galactosidases are mostly produced by psychrotrophiles and several have been isolated since the 1990s. Loveland et al. [11] isolated Arthrobacter sp. D2 Fig. 4. Galactosidase activity assay. The enzyme activity was determined as described in the Materials and Methods. A. Effect of temperature on β-galactosidase activity. Black square, purified GalA; black triangle, crude enzyme of GalA; black circle, crude enzyme of GalB. B. The thermostability of GalA. Black circle, 30oC; white circle, 35oC; black triangle, 40oC; white triangle, 45oC; black square, 50oC. and D5 from Pennsylvania farmlands, which produce coldactive β-galactosidases with an optimum enzyme activity at 25oC and 30oC, respectively. Coker et al. [3] obtained BagS from Arthrobacter strain SB with an optimum activity at 20oC [3]. Nakagawa et al. [14] isolated BglA from Arthrobacter psychrolactophilus strain F2 with an optimum activity at 10oC. In the present study, a coldactive GalA with an optimum activity at 15oC was isolated from Arthrobacter sp. ON14. The GalA has the highest sequence identity with BglA, both representing cold- Table 1. Purification of the GalA. Crude extract 40% (NH4)2SO4 DEAE-Sepharose Q-Sepharose Total protein (mg) Total activity (U) 240.35 43.92 5.91 1.61 100.95 93.55 50.24 40.89 Specific activity (U/mg) 0.42 2.13 8.5 25.4 Purification (fold) 1 4.23 21.3 61.95 241 Xu et al. Table 2. Effects of metal ions on GalA activity. Metal ion None Na+ K+ Mg2+ Ca2+ Mn2 Zn2+ Cu2+ Residual activity P value 100% 121%±5.5% 125%±7.5% 142%±4.6% 92%±4.4% 115%±4.5% 34%±2% 0% 0.02 0.029 0.004 0.086 0.027 0.00 0.00 SPSS16 analysis results and P<0.05 denote significant difference. Fig. 5. Purified GalA determined on 10% SDS-PAGE gel. Lane1, cell lysate; lane2, purified GalA. loving β-galactosidases; however, they show significant differences in their thermal stability. The enzyme activity of GalA dramatically decreased above 45oC and almost disappeared at 50oC, yet remained very stable below or at 40oC. In contrast, BglA and many other cold-active βgalactosidases lose most of their enzyme activity at around 35oC [3, 4, 11, 14], making GalA relatively thermostable. However, there seems to be an apparent contradiction: the enzyme GalA starts to be inactivated at 45oC, yet the thermostability assay revealed that the enzyme was partially stable at 40oC (Fig. 4A and 4B). A possible explanation is reversible unfolding and dissociation of the active enzyme within a certain temperature range (i.e., below 50oC) [17]. At temperatures above 15oC, GalA is gradually dissociated and loses partial activity, yet its monomers can be quickly reassociated into the active form when it is taken back to a low temperature. Meanwhile, the dissociated GalA proteins at a high temperature can quickly associate into the active enzyme unit [3] when cooling down to a low temperature. This may explain the contradiction between the thermodependent activity and stability of GalA. Comparisons of several cold-active enzymes, including GalA, BglA, and isozymes from Arthrobacter strain C2-2, SB, and B7-15, found that the thermal stabilities of GalA, C2-2, and B7-15 were very similar, whereas that of BglA and SB was similar [3, 10, 14, 21]. Five amino acid residues, Val-107, Ser1-34, Thr1-35, Thr-136, and Ala741, were identified as potentially important residues for the enzyme thermal stability, as they corresponded with residues in GalA, C2-2-1, and B7-15, yet differed in BglA and BgaS (Fig. 2). However, the roles of these residues in the enzyme thermal stability need further study. The co-existence of more than two β-galactosidase isozymes in one single bacterial strain has been previously reported [3, 10, 11, 15]. In the present study, two β- galactosidase genes, galA (3,090 bp) and galB (2,052 bp), were isolated from Arthrobacter sp. ON14 and found to encode isozymes belonging to the GH2 and GH42 family, respectively. Whereas GalA was found to be cold-active, GalB was active under mesophilic conditions. Different types of β-galactosidase are distributed in different areas in cells, and carry out different physiological functions [18, 23]. Generally, intracellular β-galactosidases are related to carbon metabolism and provide material for the construction of the cell wall. GalA and GalB were both found to be intracellular, as very little enzyme activity was detected outside the bacterial cells (unpublished data). Thus, questions arise as to why the cells need two enzymes with similar functions, how the enzymes are regulated, and whether they are related to the environmental adaptation of the cells? The expressions of both galA and galB were monitored according to different temperatures, using QPCR analyses with lactose as the sole carbon source. A remarkable induction of galA and inhibition of galB were observed at a low temperature (4oC) and vice versa at a high temperature (28oC), suggesting that ON14 is more likely to use GalA at a low temperature as it is coldactive, and then shifts to the overproduction of GalB to cope with an increasing temperature. This would seem to be the most economic adaptation to improve the utilization efficiency of lactose by the strain. Thus, the presence of two β-galactosidase isozymes in Arthrobacter sp. ON14 provides more flexibility and adaptability in response to ever-changing environmental temperatures. The metal ions experiments revealed that Na+, K+, Mg2+, and Mn2+ are activators, with Mg2+ being a possible cofactor for GalA; Zn2+ and Cu2+ are inhibitors; and Ca2+ has no effect on the enzyme activity. The effects of metal ions on β-galactosidase are important to consider, as metal ions should not inhibit the enzyme activity during dairy processes. 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