RESPONSES OF JELLYFISH TO ENVIRONMENTAL CHANGE Shannon Klein BSc (Hons) Griffith School of Environment Griffith Sciences Griffith University, Gold Coast Campus, Queensland, Australia Submitted in fulfilment of the requirements of the degree of Doctor of Philosophy September 2016 ABSTRACT Worldwide, marine ecosystems are being impacted by a suite of anthropogenic stressors. Jellyfish are distributed worldwide and often proliferate rapidly to form conspicuous and problematic blooms. Jellyfish are considered robust to a range of environmental stressors and, as a consequence, there is concern among researchers that changing environmental conditions could facilitate jellyfish populations. There is, however, a paucity of robust evidence to support these claims because few manipulative experiments have been done to establish causative mechanisms that may allow jellyfish to proliferate under environmental stress. The overall aim of this thesis was to use manipulative experiments to test hypotheses about the influence of local, regional and global scale stressors on jellyfish. To assess the potential interactive effects of environmental stressors that occur episodically and on a local scale, I investigated the potential interactive effects of reduced salinity and a photosystem II herbicide (atrazine) on symbiotic medusae of Cassiopea sp. during a simulated rainfall event (Chapter 2). Medusae exposed to reduced salinity and high concentrations of atrazine individually exhibited negative effects. Medusae survived and recovered from conditions that mimicked mild and moderate rainfall events, but exposure to conditions that mimicked a heavy rainfall event (i.e. reduced salinity and high concentrations of atrazine in combination) caused medusae to die. These findings suggest that although symbiotic medusae can tolerate mild and moderate rainfall events, medusae may not survive heavy rainfall events that typically expose biota to high levels of herbicide runoff and reduced salinity. Global scale stressors occur concomitantly and have the potential to influence jellyfish populations. I, therefore, examined the potential interactive effects of ocean warming and future UV-B scenarios (both increasing and decreasing) on symbiotic jellyfish ii polyps of Cassiopea sp. (Chapter 3). Warming enhanced rates of asexual reproduction of polyps and had no effect on the photochemical efficiency of symbionts under low UV-B conditions. Under current and high UV-B conditions, however, warming reduced polyp reproduction and photochemical efficiency of symbionts. If warming and reduced UV-B conditions occur concomitantly in the future then Cassiopea sp. polyps may continue to proliferate. If, however, warming coincides with elevated UV-B conditions then polyp populations may decline in the future. Jellyfish that harbour symbionts may have an ecological advantage over other nonsymbiotic jellyfish under environmental stress because symbionts take up and fix CO2, produce oxygen during photosynthesis, and translocate carbon to the host. Chapter 4 assessed the role of symbionts (Symbiodinium) in potentially mitigating the concomitant effects of hypoxia and acidification on polyps of Cassiopea sp. that occur during microbial-driven coastal hypoxic events Although aposymbiotic polyps exposed to hypoxia and acidification survived, the stressors in combination exacerbated the negative effects on polyps relative to those exposed to the stressors individually. Symbiotic polyps exposed to the dual stressors, however, responded similarly to those raised under ambient conditions. Importantly, these findings demonstrate that Symbiodinium mitigated the negative effects of hypoxia and acidification in combination on Cassiopea sp. polyps and suggest that symbiotic polyps may continue to proliferate in response to the dual stressors. Aposymbiotic polyps, however, may decline when hypoxia and acidification co-occur. Marine organisms may become more resistant to environmental change over time through acclimation (or acclimatization) processes. Chapter 5 examined the potential role of acclimation in mitigating the effects of future warming and acidification conditions. I pre-exposed polyps of the Irukandji jellyfish Alatina nr mordens to iii elevated temperature and low pH, separately and in combination. Polyps were then subsequently exposed to either current or future conditions (warming and acidification) during a secondary exposure. Pre-exposure to warming and acidification in isolation mitigated the negative effects of future conditions on polyps. Polyps pre-exposed to warming and acidification in combination, however, exhibited negative effects, suggesting that pre-exposure to the dual stressors did not mitigate the negative effects of future conditions. Although pre-exposure to warming and acidification individually could facilitate the proliferation of polyps, ocean warming and acidification are likely to occur concomitantly and thus, polyps of A. nr mordens are unlikely to thrive in response to the dual stressors. In the studies conducted in this thesis, jellyfish (in most cases) survived the various environmental stressors tested, but most failed to proliferate. Importantly, these findings do not support claims that all jellyfish are robust to environmental stress. These observations highlight the need to investigate the potential interactive effects of cooccurring stressors and suggest that conclusions based on studies that investigate the effects of individual stressors should be interpreted cautiously when predicting how jellyfish may respond to changing environmental conditions. Symbionts and acclimation may play an important role in the proliferation of jellyfish under environmental stress. iv STATEMENT OF ORIGINALITY This work has not previously been submitted for a degree or diploma in any university. To the best of my knowledge and belief, the thesis contains no material previously published or written by another person except where due reference is made in the thesis itself. ________________________________ Date: 09-09-2016 Shannon Klein v ACKNOWLEGEMENTS I would like to express my sincerest gratitude to my principal supervisor Associate Professor Kylie Pitt and my associate supervisor Professor Anthony Carroll for their enduring support, patience, guidance and continuous enthusiasm throughout out my candidature. In particular, I have been fortunate to have their thoughtful input and editorial advice, which greatly improved the quality of this thesis and published papers within. I thank the staff and fellow postgraduates at the Griffith School of Environment and Australian Rivers Institute (Coast and Estuaries), particularly David Welsh, Fred Leusch, Will Bennett, Peter Teasdale, Michael Arthur, Erin Wallace, David Spencer, Ariella Chelsky, Chris Henderson, Anusuya Willis, Tyson Martin, Ben Gilby, Sarah Engelhard and Mariel Familiar-Lopez for discussion, feedback and advice during the course of my project. Thank you to David Suggett, Matthew Nitschke and Sam Goyen for the opportunity to collaborate, your advice and molecular analyses. I am tremendously grateful to Michael Arthur and Jason Hay for their invaluable help and guidance with statistical analyses. I am extremely grateful to Jamie Seymour and, Amanda Reno and Kate Wilson from Underwater World, Sunshine Coast, for cultures of jellyfish and advice on husbandry. I would also like to thank Dan Tonzing for his advice, laboratory assistance and extensive technical support during my candidature. I am particularly grateful to Dusty McLean, Erin Wallace, Tyson Martin, David Spencer, Chris Henderson, Lana Shaw, Novodha Dissanayake, Asier Olalde, Nic Dorean, Deya Angulo Chinas, Catherine Pickering, Rod Connolly, Jan Warnken, Steve Melvin, Jason van de Merwe, Tony Farrell and James Furse for their amazing friendship and support. I express my deepest appreciation to my Mum, Dad and grandparents for their unconditional support and encouragement. This work was funded by Griffith University and an Australian Postgraduate Award. vi ACKNOWLEDGEMENT OF CO-AUTHORED PAPERS Included in this thesis are two published papers (Chapters 2 and 3), and two manuscript submitted for publication (Chapters 4 and 5), which are co-authored by other researchers. My contribution to each research chapter is outlined at the beginning of the relevant chapters. The bibliographic details and status of these papers are: Klein SG, Pitt KA, Carroll AR (2016) Reduced salinity increases susceptibility of zooxanthellate jellyfish to herbicide toxicity during a simulated rainfall event. Environmental Pollution 209:79-86 10. Klein SG, Pitt KA, Carroll AR (2016) Surviving but not thriving: inconsistent responses of zooxanthellate jellyfish polyps to ocean warming and future UV-B scenarios. Scientific Reports 6: 28859. Klein SG, Pitt KA, Nitschke MR, Goyen S, Welsh DT, Suggett DJ, Carroll AR (submitted for publication) Symbiodinium mitigate the combined effects of hypoxia and acidification on a non-calcifying cnidarian. Klein SG, Pitt KA, Carroll AR (submitted for publication) Pre-exposure to individual, but not simultaneous, climate change stressors allow Irukandji jellyfish polyps to cope under future conditions. Appropriate acknowledgements of those who contributed to the research but did not qualify as authors are included at the end of each chapter. _________________________ Date: 09-09-2016 Shannon Klein _________________________ Date: 09-09-2016 Supervisor: Kylie Pitt vii RELATED PUBLICATIONS AND PRESENTATIONS Peer reviewed publications Klein SG, Pitt KA, Carroll AR (2016) Reduced salinity increases susceptibility of zooxanthellate jellyfish to herbicide toxicity during a simulated rainfall event. Environmental Pollution 209:79-86 10. Klein SG, Pitt KA, Carroll AR (2016) Surviving but not thriving: inconsistent responses of zooxanthellate jellyfish polyps to ocean warming and future UV-B scenarios. Scientific Reports 6: 28859. Conference presentations based on this thesis: Klein SG, Pitt KA, Nitschke M, Goyen S, Welsh D, Suggett D, Carroll AR. The role of zooxanthellae in mitigating the effects of hypoxia and acidification on jellyfish polyps. Fifth International Jellyfish Blooms Symposium, Drivers of jellyfish blooms section, June, 2016. Barcelona, Spain. Klein SG, Pitt KA, Carroll AR. Freshwater input increases the vulnerability of Cassiopea sp. jellyfish to herbicide exposure. Australian Marine Sciences Association (AMSA) annual national conference. August, 2014. Canberra, ACT, Australia. Klein SG, Pitt KA, Carroll AR. Interactive effects of herbicide toxicity and reduced salinity on the zooxanthellate jellyfish, Cassiopea sp. Australian Coral Reefs Society conference. General Session, August 2014. Brisbane City, QLD, Australia. Klein SG, Pitt KA, Carroll AR. Investigating the effects of environmental stressors on the early life history stages of jellyfish. Australian Rivers Institute annual higher degree research symposium. July, 2014. Nathan, QLD, Australia. viii TABLE OF CONTENTS Abstract ........................................................................................................................... ii Statement of originality ...................................................................................................v Acknowlegements .......................................................................................................... vi Acknowledgement of co-authored papers .................................................................. vii Related publications and presentations ..................................................................... viii Chapter 1 An introduction to the influence of environmental change on jellyfish ..........1 Objectives and overview of thesis ........................................................................16 Chapter 2 Reduced salinity increases the susceptibility of zooxanthellate jellyfish to herbicide toxicity during a simulated rainfall event ........................................................28 Chapter 3 Surviving but not thriving: inconsistent responses of zooxanthellate jellyfish polyps to ocean warming and future UV-B scenarios .....................................................56 Chapter 4 Symbiodinium mitigate the combined effects of hypoxia and acidification on a non-calcifying cnidarian ...............................................................................................66 Chapter 5 Pre-exposure to individual, but not simultaneous, climate change stressors allow Irukandji jellyfish polyps to cope under future conditions ..................................106 Chapter 6 General discussion.......................................................................................143 Appendix ......................................................................................................................156 ix CHAPTER 1 – INTRODUCTION An introduction to the influence of environmental change on jellyfish 1 Human influences on the ocean The human population has recently exceeded 7 billion (Keinan & Clark, 2012). The growing human population has caused an increase in anthropogenic activities along coastlines that have widespread effects on marine ecosystems (Crain et al., 2008, Best et al., 2015, Pörtner & Gutt, 2016). Historically, the major anthropogenic stressors that affected marine ecosystems were habitat loss and over-exploitation of key species (Sala et al., 2000, Jackson et al., 2001, Dulvy et al., 2003). In the past century, however, the list of anthropogenic stressors has expanded to include the effects of pollutants, the input of excess nutrients, UV-B radiation and anthropogenic climate change caused by greenhouse emissions. These stressors have caused rapid changes to marine ecosystems on a local, regional and global scale (Hoegh-Guldberg, 2010) and are predicted to adversely affect animal physiology (Doney et al., 2012), ecological interactions (Hoegh-Guldberg et al., 2007) and alter ecosystem functioning (Best et al., 2015, Albright et al., 2016). Environmental stressors that occur on a global scale are a major threat to marine ecosystems (Brown et al., 2013). Rising atmospheric greenhouse gas concentrations (CO2, N2O4, CH4 and chlorofluorocarbons) have caused ocean surface temperatures to increase by 0.6-0.7°C over the past century (IPCC, 2007, Solomon, 2007). In addition to acting as a heat sink, the oceans have concurrently absorbed ~25-30% of the total anthropogenic carbon dioxide (CO2) emissions since the 1800s (Feely et al., 2004, Sabine et al., 2004). As a consequence, the mean surface pH of the ocean has decreased by ~0.1 pH units relative to pre-industrial times (Caldeira et al., 2003, Doney, 2010). As more anthropogenic CO2 enters the Earth’s atmosphere the ocean is expected to simultaneously warm and become more acidic (IPCC, 2014). Ocean warming and acidification are likely to have varying effects on marine organisms. For example, ocean warming can stimulate physiological processes, but when temperature conditions exceed the upper thermal threshold of marine organisms physiological processes can be 2 suppressed (Byrne, 2011). Ocean acidification reduces the concentration of carbonate ions available for skeleton formation for calcifying organisms and can suppress important physiological processes (Portner, 2008, Widdicombe, 2008). Ocean warming and acidification are occurring concomitantly with changes to ultraviolet B (UV-B) radiation. Between the 1960s and 1990s elevated levels of ozone depleting substances (ODSs) in the atmosphere partially eroded the ozone layer and elevated levels of UV-B radiation at the Earth’s surface (Weatherhead & Andersen, 2006). Since the yr. 2000 the area of total ozone has increased by ~1% (Chehade et al., 2014, WMO, 2015) because the levels of ODSs in the Earth’s atmosphere have slowly reduced (Stolarski et al., 2012). Climate system factors such as ozone chemistry and climate change, however, may halt ozone recovery and potentially increase levels of UV-B radiation at the Earth’s surface (Williamson et al., 2014, Bais et al., 2015). Elevated UV-B radiation can reduce fecundity (Siebeck et al., 1994), slow development (Przeslawski et al., 2004) and reduce survival of several life history stage of marine organisms (De Lange & Van Reeuwijk, 2003). Regional-scale and seasonal stressors (such as eutrophication and hypoxia) can affect the physiology of marine organisms (Joyce et al., 2016), the persistence of populations (Chu & Tunnicliffe, 2015) and affect ecosystem function (Baird et al., 2004, Diaz & Rosenberg, 2008). Of these stressors, the anthropogenic input of excess nutrients is of particular concern in some coastal areas that support dense human populations (Smith et al., 1999). The excess input of nutrients (such as nitrogen and phosphorus) into coastal waters can stimulate the excessive production of organic matter (OM) and lead to eutrophication (Diaz & Rosenberg, 2008). The subsequent microbial consumption of excess OM can deplete oxygen (O2) concentrations and can cause hypoxia (<2mg O2 L1 ), cases of which have been reported with increasing frequency worldwide (Diaz & 3 Rosenberg, 2008). Hypoxia can reduce growth (Rabalais et al., 2002), reproduction (Wang et al., 2016) and induce physiological stress in marine organisms (Spicer, 2014). In some cases, hypoxic events can trigger mass mortality of metazoans and reduce biodiversity (e.g.Rabalais et al., 2002). Multiple anthropogenic stressors that occur on a local scale impact marine ecosystems (Carilli et al., 2009). Terrestrial runoff and shipping activities contribute various pollutants such as pesticides, heavy metals, anti-fouling chemicals and petroleum hydrocarbons into coastal ecosystems (van Dam et al., 2011). These chemical pollutants are often delivered into marine systems at high concentrations during episodic rainfall events. Freshwater inflow during heavy rainfall exposes marine organisms to initially high concentrations of pollutants and reduced salinity (Solomon et al., 1996, McMahon et al., 2005, Davis et al., 2012). Chemical pollutants can be assimilated and concentrated into biological tissue of marine organisms and cause severe physiological stress (Depledge & Billinghurst, 1999, Islam & Tanaka, 2004). Despite the observation that marine biota are exposed to initially high concentrations of chemical pollutants and reduced salinity during rainfall events, few studies have quantified the combined effects of the dual stressors on marine organisms (but see, Jones et al., 2003). The importance of studying interactions between stressors Changing ocean conditions expose marine organisms to multiple stressors that may impart effects that differ from those when biota are exposed to the stressors individually. The effects of multiple stressors on marine organisms is often assumed to be an additive accumulation of the individual stressors (e.g. Halpern et al., 2007, Ban & Alder, 2008). Numerous empirical studies, however, demonstrate that stressors in combination can exacerbate the negative impacts on marine organisms (termed synergism) (e.g. Lischka & Riebesell, 2012, Gobler et al., 2014). For example, growth 4 rates of the hard clam Mercenaria mercenaria were unaffected by low DO and low pH individually, but growth rates of M. mercenaria were reduced by 40% when exposed to the stressors in combination, suggesting a negative synergistic interaction (Gobler et al., 2014). Conversely, other studies have observed that the effects of multiple stressors in combination can be less than those of the individual stressors added together (Wulff et al., 2000). For example, exposure to elevated UV-B radiation had negative effects on microalgal assemblages of Haslea ostreana and Nitzschia spp., however, when the microalgal assemblages were exposed to elevated UV-B radiation in nutrient rich conditions (N, P, Si) the negative effects of UV-B were partly mitigated, suggesting an antagonistic interaction (Wulff et al., 2000). Given the complexity of responses of marine biota to co-occurring stressors, experiments need to consider the potential interactive effects of co-occurring stressors to accurately predict how marine biota may respond to environmental change. The need to incorporate environmental realism into experiments To obtain a realistic understanding of how marine species are likely to respond to environmental stress manipulative experiments need to accurately mimic conditions that biota experience in the natural environment. For example, in coastal ecosystems, hypoxia is linked to acidification because carbon dioxide (CO2) is produced during microbial respiration, which subsequently reduces pH through the formation and dissociation of carbonic acid (Gobler & Baumann, 2016). However, most experiments that examine the effects of hypoxia on marine species do not consider the effects of acidification. Many studies of the effects of hypoxia simulate low O2 concentrations by bubbling nitrogen (N2) gas in seawater to displace O2 (e.g. Wang & Widdows, 1991, Gracey et al., 2001, Eerkes-Medrano et al., 2013). Indeed, sparging N2 gas lowers O2 concentrations but simultaneously displaces CO2 and increases pH, which creates a low O2, high pH environment that is contrary to observations of hypoxic systems in the natural environment (Gobler et al., 2014). Consequently, results of experiments that 5 simulate hypoxic conditions with N2 gas may not accurately represent the response of biota in the field. Most studies of the effects of environmental stressors on marine biota investigate the effects of exposure to constant levels of stressors (e.g. UV-B; Fischer & Phillips, 2014; pollutants Vallotton et al., 2008; pH, Klein et al., 2014) In marine ecosystems, however, biota are often subject to fluctuations in environmental conditions. For example, low tides that occur in the middle of the day, when UV-B irradiance is most intense, simultaneously expose shallow marine biota to high UV radiation and mid-day temperature extremes (Helmuth et al., 2002). Furthermore, biota are often exposed to multiple environmental stressors during ‘pulse’ events. Indeed, freshwater inflow from rainfall events simultaneously expose biota to initially high concentrations of pesticides but dilution due to tidal movements causes herbicide concentrations to subside over several days. Despite these observations, most studies of the effects of pollutants delivered in rainfall events investigate the effects of continuous exposure in short term experiments (over several hours) (but see, Macinnis-Ng & Ralph, 2004; Vallotton et al., 2008). To accurately assess how marine biota may respond to environmental stress, manipulative experiments need to include environmentally relevant levels of the stressors, ensure that the duration of exposure to the stressors is realistic and examine potential interactive effects of co-occurring stressors. Coping with environmental stress The degree to which short term manipulative experiments can be used to accurately predict how marine species may respond to environmental stress, ultimately depends on whether organisms can adapt or acclimate to environmental change. Marine species may become robust to environmental stressors through non-genetic changes such as acclimation and genetic adaptation. Genetic adaptation involves the natural selection of 6 genetic variation that ultimately shifts the average phenotype to improve fitness (Bell, 2013, Logan et al., 2014). Although genetic adaptation is hypothesised to facilitate the persistence of many marine species under future conditions, genetic adaptation typically occurs over many sexual generations and thus is difficult to experimentally test. Acclimation, however, can occur within a single generation and over short time-scales such as weeks (e.g. Bellantuono et al., 2011) and months (e.g. Form & Riebesell, 2012). Acclimation is considered to be a major determinant for the persistence of marine species in the face of climate change (Somero, 2005). Thus, manipulative experiments need to consider whether marine species may acclimate or adapt to changing conditions when predicting how biota may persist under future conditions. Emerging evidence suggests that organisms that harbour endosymbiotic dinoflagellates (zooxanthellae), may respond differently to non-symbiotic organisms under environmental stress (Gibbin et al., 2014, Laurent et al., 2014). Zooxanthellae live within the cells of the host, and in exchange, zooxanthellae take up and fix CO2 during photosynthesis and translocate carbon to the host. Thus, living in symbiosis is likely to benefit both partners. Zooxanthellae may be of particular benefit under hypoxic conditions because zooxanthellae provide photosynthetic O2 to the host during photosynthesis, potentially alleviating the host’s oxygen debt (Malcolm & Brown, 1977). The presence of zooxanthellae may partially mitigate the effects of acidification because the CO2 utilised during photosynthesis can reduce the pCO2 within the host’s tissues, thereby regulating the pH of the tissues (Laurent et al., 2013, Gibbin et al., 2014, Laurent et al., 2014). These processes, however, only occur when zooxanthellae photosynthesise during the day and, therefore, symbiotic biota may be limited in their ability to cope during the night. 7 Jellyfish blooms Jellyfish (defined here as cnidarian medusae) often proliferate rapidly and form conspicuous blooms. Jellyfish blooms can directly interfere with human health or enterprise and have severe socio-economic effects (Richardson et al., 2009, Lucas et al., 2014). Some species of jellyfish from the class Scyphozoa can form problematic blooms (Arai, 2012). For example, frequent blooms of the ‘giant jellyfish’ Nemopilema nomurai in the Sea of Japan pose a significant threat to fisheries (Uye, 2008). Outbreaks of the venomous jellyfish Pelagia noctiluca in the northeast Atlantic and Mediterranean have detrimental effects on fisheries and tourism because envenomations prevent swimmers from entering the water (Licandro et al., 2010). Cubozoan jellyfish are also of major concern because of their powerful venom and potential to have severe socioeconomic impacts on coastal communities (Madin et al., 2012). Whether jellyfish populations are increasing globally is a contentious issue. Some evidence suggests that jellyfish populations are increasing (Brotz, 2011), however, these results contrast with one other global jellyfish analysis which concluded that there is no robust evidence for a global increase in jellyfish (Condon et al., 2013). Although some regions have exhibited increases in jellyfish populations, no change or decreases in populations have been observed in other regions (Condon et al., 2013). Condon et al. (2013) suggests that jellyfish populations undergo long term ( ̴ 20-yr) oscillations on a global scale. That study, however, revealed that some coastal regions such as the Sea of Japan, the Barents Sea and parts of the Mediterranean have experienced greater blooms of medusae (Condon et al., 2013). Although dense aggregations of medusae are a normal feature of healthy ecosystems, there is speculation that jellyfish blooms may be further enhanced by anthropogenic impacts such as ocean warming (Purcell, 2012), overfishing (Daskalov et al., 2007), eutrophication (Purcell, 2012) and the proliferation of artificial structures (Duarte et al., 2012). 8 Claims that environmental drivers cause jellyfish blooms Most conclusions made about possible drivers of jellyfish blooms have been based on correlative data. However, direct empirical data are limited for most of these environmental stressors because few manipulative experiments have been done to establish causative mechanisms. Natural drivers including large-scale climate drivers are hypothesised to promote jellyfish blooms (Lynam et al., 2005). For example, a rise in jellyfish abundance in the 1990s in the Bering Sea was initially interpreted as a consequence of climate change but a subsequent decline after the yr. 2000 coincided with transitions between climatic regimes of the North Atlantic Oscillation (Brodeur et al., 2008). Furthermore, El Niño oscillations between 1991-92 and 1997-98 in Monterey Bay, California were linked to high abundances of some seldom-seen species of cnidarian medusae, however, other historically common species were not abundant (Raskoff, 2001). In addition to these natural oscillations, some researchers hypothesise that warming ocean temperatures could further enhance jellyfish populations because warming generally increases rates of growth and asexual reproduction of polyps (Widmer, 2005, Wilcox et al., 2007, Purcell et al., 2009). Overfishing of competitors and predators of jellyfish is hypothesised to cause a trophic cascade that could facilitate the proliferation of jellyfish. For example, an outbreak of the pelagic ctenophore Mnemiopsis leidyi (Phylum: Ctenophora) in the Black Sea was attributed to regime shifts triggered by intense anthropogenic impacts, which included eutrophication and heavy fishing (Daskalov et al., 2007). Eutrophication of coastal waters may benefit jellyfish by increasing the availability of planktonic food for jellyfish (Parsons & Lalli, 2002). Eutrophication is linked to the spread of hypoxia because the excess nutrients can sink to the benthos and bacterial decomposition can reduce oxygen concentrations (Diaz & Rosenberg, 2008). Jellyfish polyps and medusae are considered to be more tolerant of hypoxia (<2mg O2l-1) than other metazoans (Purcell et al., 2001, Shoji et al., 2005). Fish avoid and die in environments of <2-3mg 9 O2 per litre (Breitburg et al., 2001), but jellyfish tolerate ≤1mg O2 per litre (Condon et al., 2001). Indeed, if jellyfish are more tolerant of hypoxic conditions than other metazoans, jellyfish may proliferate because they may access food sources otherwise unavailable to competitors. Furthermore, hypoxic conditions may provide a refuge from other less tolerant predators such as fish (Shoji et al., 2005, Shoji et al., 2010). Deleterious effects of environmental stressors on jellyfish Jellyfish polyps and medusae are considered robust to a range of anthropogenic stressors (Richardson et al., 2009, Templeman & Kingsford, 2010, Brotz, 2011, Gershwin, 2013). For example, Stoner et al. (2011) examined the population density and body size of Cassiopea sp. medusae at 5 highly urbanised sites and 5 undisturbed sites and reported that Cassiopea sp. medusae were larger and more abundant in urbanised sites. Although no manipulative experiments were done by Stoner et al. (2011), the study was cited as evidence for the conclusion that eutrophication increased population density and body size of Cassiopea sp. (Purcell, 2012, Gershwin, 2013). Although jellyfish are frequently cited to benefit from climate change (Richardson et al., 2009, Lynam et al., 2011, Purcell, 2012), few studies have experimentally examined the effects of climate stressors on jellyfish. However, the effects of warmer temperatures have been studied in scyphozoan polyps and are likely to benefit jellyfish populations by enhancing rates of growth and reproduction (Widmer, 2005, Purcell, 2007, Wilcox et al., 2007, Purcell et al., 2009). Despite the co-occurrence of warming and acidification in marine ecosystems, only one study (Klein et al., 2014) has investigated the interactive effects of warming and acidification on jellyfish. That study investigated the interactive effects of warming and acidification on a cubozoan jellyfish, Alatina nr mordens, and reported that although warming enhanced rates of asexual reproduction, acidification reduced the number of asexual buds and reduced the width 10 of statoliths by 24% in lowest pH treatment (pH 7.6) (Klein et al., 2014). These results suggest that jellyfish may not be immune to the combined effects of ocean warming and acidification. Climate-induced changes to ultraviolet (UV) radiation may adversely affect jellyfish populations. The only study to investigate the effects of UV light on medusa survival reported that the freshwater jellyfish Limnocnida tanganyicae (Cnidaria: Hydrozoa) actively avoided water layers with high illumination (Salonen et al., 2012). Light incubation experiments revealed that jellyfish exposed to conditions where UV wavelengths were filtered out were not significantly affected, however medusae exposed to natural light died after only 1h of incubation (Salonen et al., 2012). Indeed, while some jellyfish species may escape high levels of UV radiation through vertical migration other benthic species that occur in shallow lagoon ecosystems may have a limited ability to move. Despite the paucity of robust evidence researchers appear to take, almost for granted now, that jellyfish are robust to environmental stressors. The life histories of jellyfish Medusae are gonochoristic and produce planula larvae via sexual reproduction (Arai, 2012). Scyphozoans and cubozoans have bipartite life histories, where embryos develop into planula larvae (Arai, 2012) (Figure 1.1). The free-swimming larvae then settle on a hard substrate and develop into sessile polyps that asexually reproduce. Asexual budding of polyps is likely to be an important process that may ultimately determine the size of medusa populations (Kingsford & Mooney, 2014). Blooms of scyphozoan jellyfish occur when juvenile medusa bud asexually from the benthic polyps (a process termed strobilation) (Figure 1.1a). Medusa production in cubozoan jellyfish, however, can vary from complete metamorphosis of the polyp into a juvenile medusa to monodisc strobilation which, after medusa production, allows the polyp to remain attached the 11 benthos and reproduce more polyps (Figure 1.1b) (Courtney et al., 2016). Medusa production typically coincides with spring or summer when planktonic food is abundant (Mills, 2001). Many scyphozoan species grow and reproduce rapidly (Dawson & Hamner, 2009). Jellyfish polyps are often perennial and can produce new polyps and medusae for many years (Arai, 2012). Furthermore, during unfavourable conditions some scyphozoan and cubozoan polyps are capable of encystment (Werner, 1975, Hartwick, 1991, Schiariti et al., 2014). During this process polyps form podocysts with stored reserves of organic compounds. Encystment is hypothesised to allow for short-term survival during unfavourable conditions and provide protection against predators (Arai, 2009). These podocysts are capable of further podocyst production and formation of medusae by strobilation (Arai, 2009). When conditions are favourable podocysts excyst to form active polyps and are capable of asexual reproduction and strobilation (Thein et al., 2012). The rapid asexual reproduction of polyps and the ability of some species to form podocysts during unfavourable conditions are hypothesised to be key drivers of the rapid proliferation of medusae blooms. 12 (a) (b) Figure 1.1 (a) Schematic diagram of the life history of the scyphozoan jellyfish, Catostylus mosaicus (Pitt, 2000) (b) Schematic diagram of the life history of the cubozoan jellyfish, Tripedalia cystophora (Carybdeidae) (Werner, 1973) 13 Zooxanthellate jellyfish Like corals, some species of scyphozoan and cubozoan jellyfish form symbioses with zooxanthellae (Straehler-Pohl & Jarms, 2011). Zooxanthellae commonly occur in the genera Cassiopea, Mastigias, Phyllorhiza and Linuche (McCloskey et al., 1994, Trench & Thinh, 1995, Verde & McCloskey, 1998, Pitt et al., 2005). Zooxanthellae in scyphozoan jellyfish are typically from the Symbiodinium genus (Thornhill et al., 2006). The most important benefit of this symbiosis is the translocation of photosynthetic products from zooxanthellae to the host. Zooxanthellae take up and fix CO2, and then translocate carbon to host tissues (Balderston & Claus, 1969). Similarly, inorganic excretory products can be translocated from the host jellyfish to the zooxanthellae (Pitt et al., 2009). Zooxanthellate medusae may assimilate dissolved inorganic carbon from the water column (Pitt et al., 2009) and those that live on the benthos (such Cassiopea sp.) extract and take up nutrients from the sediment (Jantzen et al., 2010). Thus, it is likely that the tight cycling of nutrients between jellyfish and zooxanthellae is a major benefit to zooxanthellate medusae that is otherwise not available to other morphologically similar species that do not contain zooxanthellae. Zooxanthellate jellyfish may respond differently to non-zooxanthellate jellyfish under environmental stress. Photosynthesis of zooxanthellae may supply the host jellyfish with photosynthetic oxygen, which may eliminate oxygen debt and be advantageous under hypoxic conditions. Although cnidarians have only two cellular layers, and therefore diffusion distance may be short, a substantial boundary layer can develop in stagnant waters (Shick, 1990). Despite these observations no studies have investigated the potential role of zooxanthellae in mitigating the negative effects of hypoxia on jellyfish. Two studies, however, have examined how the presence of zooxanthellae may allow cnidarians to cope when exposed to low oxygen conditions. (Malcolm & Brown, 1977, Rands et al., 1992). Malcolm & Brown (1977) exposed the symbiotic sea anemone Anthopleura elegantissima to hypoxic conditions and reported that the 14 intracellular production of O2 enabled aerobic metabolism to continue under hypoxic conditions. Zooxanthellae may also help zooxanthellate jellyfish to cope under acidification conditions. Zooxanthellae take up and fix CO2 during photosynthesis, which may reduce pCO2 in the host’s tissues. Indeed, under low pH conditions, zooxanthellae cells can exert significant control over the pH of coral host tissues (Gibbin et al., 2014). Observations that zooxanthellae contribute nutrients, take up and fix CO2, and supply algal-derived O2 to the host suggest that jellyfish that harbour zooxanthellae may have an ecological advantage under hypoxic and more acidic conditions. Overnight zooxanthellae are unable to photosynthesise and therefore, zooxanthellae may be limited in their ability to mitigate the potential negative effects of hypoxia and acidification on the host during the night-time. For example, under hypoxic conditions the sea anemone Anemonia viridis, remained normoxic when exposed to light conditions but A. viridis did not maintain normal ATP levels and intracellular pH declined under dark conditions (Rands et al., 1992). These results suggest that the survival of zooxanthellate jellyfish under hypoxic and more acidic conditions may depend on whether the host can survive overnight when, coincidentally acidification and hypoxia are generally the most extreme in coastal ecosystems (Summers & Engle, 1993). 15 OBJECTIVES AND OVERVIEW OF THESIS The main objective of this thesis was to use manipulative experiments to test hypotheses about the influence of environmental stressors on the proliferation of jellyfish. Specifically, research chapters within this thesis aim to: Chapter 2: Assess the interactive effects of reduced salinity and the herbicide atrazine on the zooxanthellate jellyfish Cassiopea sp. during a simulated rainfall event. Chapter 3: Investigate the potential interactive effects of future UV-B radiation scenarios (both increasing and decreasing) and ocean warming projections on zooxanthellate polyps of Cassiopea sp. 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Wulff A, Sundbäck K, Nilsson C, Underwood GJ (2000) Effects of UV-B radiation on a marine microphytobenthic community growing on a sand‐substratum under different nutrient conditions. Limnology and Oceanography, 45, 1144-1152. 27 CHAPTER 2 Reduced salinity increases susceptibility of zooxanthellate jellyfish to herbicide toxicity during a simulated rainfall event This chapter includes a published paper. My contribution involved: designing the study, conducting the experiments, data analysis, interpretation of results and writing the manuscript. The bibliographical details of the co-authored published paper, including all authors are: Klein SG, Pitt KA, Carroll AR (2016) Reduced salinity increases susceptibility of zooxanthellate jellyfish to herbicide toxicity during a simulated rainfall event. Environmental Pollution 209:79-86 10. http://dx.doi.org/10.1016/j.envpol.2015.11.012 (Signed) _____________________ Corresponding (1st) author: Shannon Klein (Countersigned) _____________________ Supervisor (and co-author): Kylie Pitt 28 Abstract Accurately predicting how marine biota are likely to respond to changing ocean conditions requires accurate simulation of interacting stressors, exposure regimes and recovery periods. Jellyfish populations have increased in some parts of the world and, despite few direct empirical tests, are hypothesised to be increasing because they are robust to a range of environmental stressors. Here, we investigated the effects of contaminated runoff on a zooxanthellate jellyfish by exposing juvenile Cassiopea sp. medusae to a photosystem II (PSII) herbicide, atrazine and reduced salinity conditions that occur following rainfall. Four levels of atrazine (0 ngL-1, 10ngL-1, 2µgL-1, 20µgL-1) and three levels of salinity (35ppt, 25ppt, 17ppt) were varied, mimicking the timeline of light, moderate and heavy rainfall events. Normal conditions were then slowly re-established over four days to mimic the recovery of the ecosystem post-rain and the experiment continued for a further 7 days to observe potential recovery of the medusae. Pulse-amplitude modulated (PAM) chlorophyll fluorescence, growth and bell contraction rates of medusae were measured. Medusae exposed to the combination of high atrazine and lowest salinity died. After 3 days of exposure, bell contraction rates were reduced by 88% and medusae were 16% smaller in the lowest salinity treatments. By Day 5 of the experiment, all medusae that survived the initial pulse event began to recover quickly. Although atrazine decreased YII under normal salinity conditions, YII was further reduced when medusae were exposed to both low salinity and atrazine simultaneously. Atrazine breakdown products were more concentrated in jellyfish tissues than Atrazine at the end of the experiment, suggesting that although bioaccumulation occurred, atrazine was metabolised. Our results suggest that reduced salinity may increase the susceptibility of medusae to herbicide exposure during heavy rainfall events. 29 Introduction Marine biota are under increasing pressure from a suite of anthropogenic activities and climate change (Crain et al., 2008, Dawson et al., 2011). To accurately assess how marine biota respond to environmental stress, however, experiments need to mimic the conditions biota experience in the field. These conditions include using environmentally relevant levels of the stressors, ensuring that the duration of exposure to the stressor is realistic and (Hughes & Connell, 1999, Macinnis-Ng & Ralph, 2004), if appropriate, examining the effects of simultaneous exposure to multiple stressors that may impart effects that differ from those when biota are exposed to each stressor individually (Folt et al., 1999). Jellyfish populations have increased in some regions of the world (but decreases or no changes have been reported in others) (Condon et al., 2013), and in some cases have caused severe socio-economic impacts on tourism, fisheries and power industries (Purcell et al., 2007). Some researchers have suggested that jellyfish populations have increased because jellyfish can tolerate many environmental stressors, including pollutants (Lucas, 2001, Templeman & Kingsford, 2010, Gershwin, 2013). The few studies of the effects of pollutants on jellyfish, however, demonstrate that chemical pollutants can exert deleterious effects on jellyfish. For example, exposure to crude oil extract caused 100% mortality of Pelagia noctiluca at concentrations ≥20µgL-1 after 16 h exposure, and survival of ephyrae and larvae decreased with increasing concentrations and exposure time (Almeda et al., 2013). Pollutants such as heavy metals can also bioaccumulate within jellyfish tissues (Templeman & Kingsford, 2010, Almeda et al., 2013, Templeman & Kingsford, 2015), but the sub-lethal effects of these metals have not been tested. Observations that toxic pollutants can negatively affect several life history stages suggest that jellyfish may not be immune to the effects of pollutants in coastal waters. 30 Like corals, jellyfish from the genus Cassiopea harbor zooxanthellae. Zooxanthellae, the microalgal symbionts of corals, jellyfish and other marine invertebrates contribute carbohydrates and other photosynthetic products to their host animals. Obstruction of electron transport through photosystem II (PSII), which occurs as a result of exposure to herbicides, can, therefore, reduce rates of growth and reproduction of the host. In some cases zooxanthellae may be expelled from the host (Jones & Kerswell, 2003, Negri et al., 2005, Cantin et al., 2007). Consequently animals, as well as plants, can be affected by exposure to PSII herbicides. PSII herbicides include, amongst others, atrazine, simazine, ametryn, hexazinone, diuron and tebuthiuron. Worldwide, herbicides are usually detected in coastal waters in the ngL-1 range (Okamura et al., 2003, Shaw et al., 2010) but during heavy rainfall and floods, herbicides may occur in the µgL-1 range (McMahon et al., 2005, Davis et al., 2012, Smith et al., 2012), which greatly exceed ecological guideline trigger values that are known to have deleterious effects on marine organisms (ANZECC and ARMCANZ, 2000). Floods, however, are episodic events and elevated concentrations of herbicides generally persist for only a few days (Solomon et al., 1996). Organisms that are adversely affected by the initial exposure to herbicides may begin to recover once concentrations of herbicides decline and the organism begins to metabolise the toxins into other forms. These metabolic breakdown products can occur in high concentrations in coastal environments and, because they are structurally similar to their parent compound, they can also exert deleterious effects on marine organisms (Stratton, 1984, Topp et al., 2000). Despite their persistence in coastal environments, most studies of herbicide exposure have focused only on the effects of the parent compound. Most studies of the effects of pollutants delivered in heavy rainfall events investigate the effects of continuous exposure over several hours (but see, Macinnis-Ng & Ralph, 2004, Vallotton et al., 2008). Freshwater inflow from heavy rainfall events exposes biota to initially 31 high concentrations of herbicides, but dilution (due to tidal movements) causes herbicide concentrations to decline over several days. Furthermore, several studies have highlighted the importance of investigating the recovery of marine organisms after pulsed exposures to determine the effects of repeated exposures (Solomon et al., 1996, Macinnis-Ng & Ralph, 2004). Macinnis-Ng & Ralph (2004) investigated the effect of two 10 h pulse exposures to copper and the herbicide, Irgarol 1051 on the seagrass Zostera capricorni and reported that although a 4-day recovery period between exposures allowed for the recovery of photosynthetic efficiency and chlorophyll concentrations, seagrasses were more vulnerable to the second exposure period. Studies that mimic the variation in herbicide concentrations that occur during rainfall events, and also allow organisms a period of recovery following the return to ambient conditions, may give a more realistic understanding of the long-term effects of herbicides.et al., 2008) During floods, coastal organisms are exposed to multiple stressors simultaneously, including sudden changes in salinity, exposure to pollutants and increased turbidity. Only one study, however, has examined the interactive effects of herbicides and other flood stressors on a cnidarian. That study, which was done on coral and tested a mild 8ppt reduction in salinity, reported that photosynthetic efficiency was reduced when exposed to Diuron (at 1 and 3μgL1 ) after 10h incubations, but no significant interaction was detected with reduced salinity (Jones et al., 2003). The salinity reduction tested was small (probably reflecting changes in salinity that occur on coastal coral reefs after heavy rain), and it is likely that larger fluctuations in salinity occur within estuarine ecosystems, which could further exacerbate the effects of herbicides. Studies that consider the effects of multiple stressors and exposure regimes specific to the area of interest, are more likely to provide a realistic understanding of how biota are likely to respond to changing environmental conditions. 32 Jellyfish from the genus Cassiopea inhabit shallow areas and so are periodically subjected to heavy rainfall events in which they are exposed to multiple stressors simultaneously. Cassiopea sp. rest upside down on the benthos with their oral arms facing upwards to expose their zooxanthellae to light (Hofmann et al., 1996). Cassiopea sp. occur in tropical and subtropical coastal waters worldwide and can form conspicuous blooms, which are sometimes problematic (Arai, 2001, Mills, 2001). The objective of this study was to mimic mild to heavy rainfall events by exposing Cassiopea sp. medusae to a pulse exposure of reduced salinity and increased concentrations of the herbicide atrazine, followed by a period where salinity and atrazine concentrations returned to ambient conditions. Atrazine was chosen as a model PSII herbicide because it is considered to be one of the five priority photosystem II inhibitor herbicides by the Queensland Government, Australia (Smith et al., 2012). Since the ban of diuron in Australia (in late 2011) (APVMA, 2011), atrazine is the most frequently detected herbicide along the Queensland coastline. We, therefore, selected atrazine as a herbicide of concern for our chosen study ecosystem. We hypothesised that Cassiopea sp. medusae exposed to low salinity and atrazine separately would exhibit negative effects on rates of growth, bell contractions and photosynthetic efficiency, but when exposed to both low salinity and atrazine simultaneously the effects would be compounded. At the end of the experiment, concentrations of atrazine and its breakdown products in the tissues of the jellyfish were analysed to determine whether they accumulated and persisted within the tissues. 33 Materials and methods Experimental approach Juvenile Cassiopea sp. medusae (size: 19.6mm ±0.42 (mean ±1SE)) were sampled from an enclosed shallow lagoon in Crab Island, Moreton Bay (27.34°S; 153.40°E), Queensland, in March 2014. Atrazine was not detected in water sampled adjacent to the mainland in western Moreton Bay and because Crab Island is on the eastern side of Moreton Bay and distant from any source of agriculture or human settlement, atrazine concentrations at Crab Island were also considered to be negligible. Consequently, the medusae used in the experiment had no prior exposure to atrazine or its breakdown products. Medusae were acclimated to laboratory conditions for 4 weeks and fed newly hatched Artemia sp. nauplii daily. Medusae were exposed to 14 hours of light per day to accurately mimic diurnal patterns. Aquarium lights were used to imitate the natural solar spectrum, with the wave crest located in the blue spectrum (400-500nm) to optimise photosynthesis of zooxanthellae. The full factorial design consisted of two orthogonal factors: salinity (three levels: high salinity (35ppt, ambient), moderate salinity (25ppt), low salinity (17ppt)) and the herbicide atrazine (four nominal levels: no atrazine (0µL-1), background atrazine (0.01µL-1), low atrazine (2µgL-1), high atrazine (20µgL-1)). Salinity conditions and exposure times were based on changes in salinity that have been recorded during mild, moderate and heavy rainfall events in Saltwater Creek, Gold Coast Australia (27.54ºS, 153.22ºE) (Benfer et al., 2007, EHMP, 2014), where Cassiopea sp. occurs. Atrazine levels and concentrations were based on actual concentrations recorded in coastal waters year-round (background atrazine), after moderate rainfall events (low atrazine) and heavy rainfall events (high atrazine) along the Queensland coast. These data were taken from studies spanning a wide geographical area, from Hervey Bay (25.16ºS, 152.53ºE) (e.g. McMahon et al. 2005) to North Queensland (e.g. Davis et al. 2012, Smith et al., 2012). 34 The experiment was done in a laboratory with the temperature controlled at 24°C, which was the ambient temperature at the location from which the jellyfish were collected. Four replicate 1L glass aquaria, each containing one medusa (bell diameter 14-26mm), were randomly allocated to each salinity and herbicide combination. Each aquarium was gently aerated to maintain >80% oxygen saturation and to circulate water. Lids were placed loosely over each aquarium with a header space of ~15mm to minimise evaporation and subsequent changes in salinity. Temperature was recorded daily in each aquarium using a thermometer and salinity was measured using a conductivity-salinity meter (TPS salinity-conductivity meter, MC-84). Each aquarium was replenished daily with fresh seawater of the appropriate salinity and atrazine concentrations. Fresh 10µm filtered seawater was used in the experiment, and sourced from The Gold Coast Seaway, Queensland (27.56ºS, 153.25ºE). Salinity was manipulated by adding reverse osmosis water. Atrazine stock solutions were prepared using 10µm filtered seawater and atrazine, 2-Chloro-4-ethylamino-6isopropylamino-1,3,5-triazine (sourced from Sigma-Aldrich, CAS number: 1912-24-9). Each day, three stock solutions and one control solution (filtered seawater) were made and sonicated for 30 minutes to ensure the solutions were homogenous. To accurately mimic the pulsed nature of a rainfall event, salinity was reduced by 1.5ppt h-1 in the low salinity treatments and reduced by 1.5ppt every 2 hours in the moderate salinity treatments until desired salinity levels were achieved. Atrazine concentrations were increased by 15% of the desired concentration for each treatment every 2 hours until desired concentrations were reached. Conditions were held constant for two days and then gradually returned to ambient (pre-flood) levels over four days by raising salinity by 5ppt d-1 (in the low salinity treatments) and 2.5ppt d-1 (in the moderate salinity treatments). Atrazine concentrations were reduced by 25% d-1. By Day 6, experimental conditions in all treatments had returned to ambient levels and the experiment was continued for a further seven days to measure potential recovery (i.e. the experiment ran for 13 days). 35 Data collection Four response variables were measured: survival, sizes of medusae, the rate of bell contractions (as a measure of behaviour) and photosynthetic efficiency of inhospite zooxanthellae. Each day, the number of bell contractions were measured for two minutes for each medusa and recorded as contractions min-1. Medusae were then removed from each replicate aquarium and immersed in seawater in a petri dish where the diameter of each medusa (at full extension) was recorded to the nearest mm using callipers. All medusae were then adapted to dark conditions for 20 minutes prior to Pulse Amplitude Modulated (PAM) measurements. Chlorophyll fluorescence measurements were made in a small plastic container with a Phyto-PAM (Walz, GmbH, Effeltrich, Germany). Measurements of chlorophyll fluorescence yielded a measure of the minimum (F) and maximum fluorescence yield (FmV) from which the effective quantum yield (YII) was calculated (∆F/Fm′) (Genty et al., 1989). All medusae were then returned to their appropriate aquaria and fed by introducing ca. 100 newly hatched Artemia sp. nauplii. Analysis of herbicide concentrations A pilot study was done to test target concentrations of atrazine and concentrations were measured analytically using liquid chromatography/ mass spectrometry (LC/MS Q-TOF). The pilot study verified that concentrations of atrazine in each salinity treatment remained stable over the 24 hour and confirmed that the natural seawater used during the experiment did not already contain atrazine or derivatives of atrazine. The pilot study also confirmed the use of 0.01µgL-1, 2.0µgL-1 and 20µgL-1 as nominal spiked concentrations for the experiment. 100mL samples were taken in 100mL HCl-washed glass bottles. Separation was achieved using a 1 × 100mm Agilent Zorbax eclipse plus C18 column with a 1.8µm particle size. Samples were analysed at 35ºC, with a flow rate of 0.8mL min-1 with isocratic elution of 1% B isocratic (0-3 mins), followed by a linear gradient 1%-100% B (3-8 mins), isocratic elution with 100% B (8-9mins), and finally column reconditioning using a gradient from 100%-1% B 36 (9-11 mins) and isocratic elution of 1%B (11-14 mins) (A/water with 0.1% formic acid, B/Acetonitrile with 0.1% formic acid). At the end of the experiment all medusae that survived were collected, weighed and frozen. All samples were freeze dried using a benchtop VirTis Freeze Dryer (benchtop K) and the dry weight was recorded. A liquid-liquid phase extraction (milli-Q water, and dichloromethane) was used to extract atrazine from each medusa. Samples were dried and re-dissolved in a final volume of 1mL of MeOH and analysed on a Waters triple Quad LC/MS with an Aquity UPLC (ultrahigh performance) inlet. Separation was achieved using a 2.1mm × 100mm Cortecs UPLC C18 column with a particle size of 1.6µm. Samples were analysed at 40ºC, with a flow rate of 0.6mL min-1 with a linear gradient starting at 1% A (0.1% formic in acetonitrile) (0-5 mins), 62.5% A -37.5% B ( water with 0.1% formic acid) (5mins5.50mins), 100% A (5.50mins- 9 mins) and held at 100% A – 99% B (9 mins-10mins). The LC/ MS analysis targeted atrazine and its breakdown products, des-isopropyl atrazine and des-ethyl atrazine. Statistical analyses Two separate statistical analyses were used to analyse each dependent variable because all medusae in the high atrazine, low salinity (20µgL-1, 17ppt) treatment died on Day 3 of the experiment. The dependent variables (change in medusa size (%), bell contraction rates (min1 ) and YII) in all treatments on days 1-3 were analysed using separate repeated measures linear mixed models (LMMs) in SPSS (SPSS, Released 2013). The three fixed factors for each analysis were identical, and were herbicide concentration (0µL-1, 0.01µL-1, 2µgL-1, 20µgL-1), salinity (35ppt, 25ppt, 17ppt) and time (days 1-3), which was the repeated measure. For all treatments that survived the experiment, all dependent variables at Day 13 were analysed using separate LMMs in SPSS. The two fixed factors were herbicide concentration and salinity. A range of models (e.g. AR(1), AR(1): heterogeneous, Compound Symmetry 37 (CS)) were investigated and the best model was obtained by comparing various goodness-offit statistics (-2 log likelihood, AIC, and BIC). If required, data were ln(x+1) transformed. For all analyses, data were checked for normality using standardised residual and Q-Q plots. When significant differences were found estimated marginal means were used to identify which means differed. Atrazine data could not be transformed to satisfy normality or homogeneity of variance assumptions for an ANOVA, therefore a permutational approach was used. Final atrazine concentrations in medusae at the end of the experiment were analysed using a two-way permutational multivariate analysis of variance (PERMANOVA) using PRIMER. The two fixed factors were herbicide concentration and salinity. Data were ln(x+1) transformed. When significant differences were found, PERMANOVA pairwise tests were used to test which means differed. Total atrazine concentrations were calculated by adding atrazine, des-isopropyl atrazine and des-ethyl atrazine. 38 Results Survival and Effective Quantum Yield All medusae in the high atrazine (20µgL-1), low salinity (17ppt) treatment died by Day 3 of the experiment but medusae in all other treatments survived throughout the experiment. During Days 1-3, the temporal variation of YII values among atrazine treatments was not consistent across the three salinity treatments (Fig. 1) (Table 1). The interaction was caused by inconsistencies in the way the medusae responded to herbicide within each level of salinity. Specifically, in the highest salinity level, only medusae in the high atrazine treatment had significantly lower YII values by Day 3 of the experiment (Fig. 1a). Medusae in the moderate salinity level responded faster than medusae in the high salinity level, with significantly lower YII values in the background, low and high atrazine treatments detected at Day 2. All medusae in the lowest salinity treatments experienced reduced YII values at Day 2 of the experiment. At Day 2, there was no significant difference between the no atrazine and background atrazine treatments but there were significantly lower YII values in both the low atrazine and high atrazine treatments, with the most pronounced effect seen in the high atrazine treatment. After Day 3, all low salinity treatments except for the high atrazine treatment, in which all individuals had died, began to slowly recover (Fig. 1c). From Day 4 onwards, YII values increased in all treatments, but rates of increase were not consistent among atrazine treatments. At the end of the experiment there was no significant difference between YII values among salinity and atrazine treatments (Fig. 1) (Table 2). 39 Fig. 1 Effective quantum yield (mean±1 SE) during the 13 day experiment at high (a), moderate (b) and low salinity (c) levels. Linear mixed model analysis was done only for days 1-3 because all medusae in the low salinity, high atrazine treatment died on Day 3 (Days 1-3 (n=48) and Days 4-13 (n=44)). Letters above data points indicate similarities (e.g. AA) and differences (e.g. AB) between atrazine treatments within each day, as determined by estimated marginal means. Note y-axis scales vary among figures. 40 Table 1 Summary of results for three linear mixed models comparing effective quantum yield, bell contractions (min-1) and medusae size (% change) between treatments during the first 3 days of the experiment (Day 1-3). Df=degrees of freedom. BIC= Bayesian Information Criterion. Variable YII Bell contractions Medusae size Transformation Ln(x+1) Ln(x+1) Ln(x+1) Model-of-best-fit CS BIC=77 AR1(H) BIC=969 AR1(H) BIC=637 P P Source of variation Df P Salinity 2 <0.001 <0.001 F=25.163 Herb 3 F=8.900 6 0.005 Time 2 <0.001 Time × Salinity 4 0.012 Time × Herb 6 <0.001 0.159 F=0.835 F=1.830 0.977 F=3.752 0.544 F=0.193 F=0.745 <0.001 F=20.471 >0.001 F=90.273 F=15.377 <0.001 F=3.592 >0.001 F=14.310 F=16.372 0.250 F=8.386 Time × Salinity × Herb 12 F=34.668 0.484 <0.001 Salinity × Herb >0.001 F=23.296 0.208 F=1.360 F=1.464 0.938 0.028 F=2.151 0.505 F=0.442 F=0.946 Table 2 Summary of results for three linear mixed models comparing effective quantum yield, bell contractions (min-1) and medusae size (% change) between treatments at Day 13 of the experiment. Df= degrees of freedom. BIC= Bayesian Information Criterion. Variable YII Bell contractions Medusae size Transformation Ln(x+1) Ln(x+1) Ln(x+1) Model-of-best-fit AR1 BIC=151 AR1(H) BIC=252 AR1(H) BIC=245 Source of variation Df P P P Salinity 2 0.156 0.951 >0.001 F=1.971 F=0.050 F=25.753 0.429 0.118 0.086 F=0.949 F=2.109 F=2.395 0.428 0.126 0.943 F=1.009 F=1.874 F=0.237 Herb Salinity × Herb 3 5 41 Behaviour Salinity, but not exposure to atrazine, reduced the rate of bell contractions (Table 1) although the pattern of variation among salinity treatments varied through time (Table 1) (Fig. 2). At Day 2 of the experiment, bell contraction rates were reduced by 18% in the high salinity treatment, 62% in the moderate salinity treatment and 94% in the lowest salinity treatment. Bell contraction rates began to recover in all treatments from Day 3 onwards. From Days 813 bell contraction rates were consistent across all levels of salinity and at the end of the experiment there was no significant difference between salinity treatments (Table 2) (Fig. 2). Fig. 2 Bell contractions (number min-1) (mean±1 SE) during the 13 day experiment. Letters above data points indicates no significant difference (e.g. AA) and significant differences (e.g. AB) between salinity treatments, as determined by estimated marginal means. Note sample size varies among days (Days 1-3 (n=48) and Days 4-13 (n=44)). 42 Change in size of medusae Atrazine did not affect the size of medusae but significant differences were detected among salinity treatments and patterns were not consistent through time (Days 1-3) (Table 1) (Fig. 3). At Day 3 of the experiment, medusae in the high salinity treatment had increased in size by 8% but medusae in the moderate salinity treatment had decreased by 7% and medusae in the lowest salinity treatment had decreased by 16%. At the end of the experiment, medusae in the high salinity treatments had increased in size by 8%. Although medusae in the moderate and low salinity treatments began to increase in size after 5 days, medusae did not return to their initial size, with significant differences remaining between salinity treatments at Day 13 (Fig. 3) (Table 2). Fig. 3 Percentage change in size of medusae (mean ±1 SE) during the 13 day experiment. Letters above data points indicates no significant difference (e.g. AA) and significant differences (e.g. AB) between salinity treatments, as determined by estimated marginal means. Note sample size varies among days (Days 1-3 (n=48) and Days 4-13 (n=44)). 43 Concentrations of atrazine and its breakdown products in medusae tissues LC/MS analysis of medusae tissue collected at the end of the experiment revealed concentrations of atrazine and its two breakdown products, des-isopropyl atrazine and desethyl atrazine in medusae in all treatments except for the no atrazine treatment (Table 3). Salinity had no effect on concentrations of atrazine, des-isopropyl atrazine, des-ethyl atrazine or total atrazine. However, concentrations of atrazine (P=0.001, F=9.646), des-ethyl atrazine (P=0.006, F=5.428), des-isopropyl atrazine (P=0.001, F= 9.562) and total atrazine (P=0.001, F=6.89) in medusae varied among atrazine treatments. Medusae in the background atrazine treatment had significantly lower mean atrazine and des-isopropyl concentrations in their tissues than medusae from the low and high atrazine treatments. However, there was no significant difference between the mean atrazine and des-isopropyl concentrations in medusae tissues from the low and high atrazine treatments (Table 3). The mean des-ethyl atrazine and total atrazine concentrations within medusae tissues increased consistently across the background, low and high atrazine treatments (Table 3). 44 Table 3 Mean (±1SE) concentrations (µgL-1) of atrazine, des-isopropyl atrazine and des-ethyl atrazine and total atrazine (i.e. the sum of atrazine and its derivatives) within jellyfish at Day 13 of the experiment. Medusae were exposed to four atrazine treatments NA (no atrazine, 0µgL-1), BA (background atrazine, 0.01µgL-1), LA (low atrazine, 2µgL-1), HA (high atrazine, 20µgL-1). Concentrations of atrazine and atrazine derivatives were averaged across all salinity levels tested. Letters in parentheses next to results indicate similarities (A,A) and differences (A,B) between atrazine treatments, as determined by post-hoc tests. ND= Not detected. Atrazine treatments Atrazine Mean ± 1SE (µgL-1) Des-isopropyl Mean ± 1SE ( µgL-1) Des-ethyl Mean ± 1SE ( µgL-1) Total Atrazine Mean ± 1SE (µg L-1) NA ND (A) ND(A) ND(A) ND(A) BA 1.8×10-3 (±0.001)(B) 9.4×10-3 (±0.003)(B) 8.3×10-3 (±0.003)(B) 1.9×10-2 (± 0.004)(B) LA 5.1×10-2 (±0.023)(C) 4.7×10-1(±0.144)(C) 9.8×10-1(±0.285)(C) 1.49 (±0.388)(C) HA 6.2×10-2 (±0.031)(C) 7.2×10-1 (±0.277)(C) 2.28 (±0.299)(D) 3.14 (±0.624)(D) 45 Discussion Cassiopea sp. medusae survived most herbicide and salinity conditions tested, except for medusae exposed to the highest atrazine and lowest salinity conditions simultaneously. These results support our hypothesis that when exposed to low salinity and atrazine separately, medusae would exhibit negative effects, but when exposed to low salinity and atrazine simultaneously the effects would be compounded. Indeed, if we had only investigated the effects of herbicide and salinity as single stressors we would have concluded that Cassiopea sp. survived all salinity and herbicide levels tested. Overall, our observations suggest Cassiopea sp. jellyfish may survive during mild to moderate rainfall events but that exposure to heavy rainfall may cause populations to decline. Atrazine affected photosynthetic efficiency but not the behaviour (i.e. bell contraction rates) or growth of the animals whereas exposure to low salinities negatively affected all three response variables. Medusae died, however, only when exposed to the most extreme combination of both treatments. Taken together, these observations suggest that the impaired photosynthetic functioning caused by exposure to Atrazine may have been the ultimate cause of mortality in medusae. Photosynthetic efficiency and bell contraction rates rapidly returned to normal after the treatments were returned to ambient conditions. Medusae that shrank during the experiment, however, did not recover to their original size. Mortality of animals is usually closely coupled with size (Kimura et al., 2010) and exposure to even mild and moderate rainfall events may, therefore, increase mortality rates within the population. The effects of chemical pollutants on marine biota can vary depending on exposure time. In this study, Cassiopea sp. were exposed to atrazine and reduced salinity over a 6-day period, and negative effects on YII were observed after only one day of exposure. 46 The only other study to investigate the effects of a herbicide and reduced salinity on cnidarians used a considerably shorter exposure time of 10h (Jones et al., 2003). Jones et al. (2003) observed reduced effective quantum yield in corals exposed to Diuron (at 1 and 3µgL-1), but there was no significant effect of salinity on the photosynthetic efficiency of the two coral species tested. Differences in results may be due to a longer exposure time in the current study and may explain why atrazine and reduced salinity had negative effects on medusae of Cassiopea sp., but no interactive effects were seen on A. formosa and M. digitata. Furthermore, Jones et al. (2003) reduced salinity by just 8ppt whereas the current study reduced salinity by 18ppt. The moderate salinity level (25ppt) chosen in this study, however, was similar to that of the low salinity conditions (27ppt) tested in Jones et al. (2003), in which no negative effects of salinity were observed. Our observations that the low atrazine treatment reduced photosynthetic efficiency under moderate salinity conditions over 2 days suggest that longer exposure times may yield more toxic effects than shorter exposure periods. Experimental conditions, as well as exposure times, may vary according to the type of ecosystem being tested. For example, Jones et al (2003) tested a shorter exposure time, probably to mimic a rainfall event on a coastal coral reef, whereas the current study investigated the effects of a longer exposure time in an intertidal creek, yielding different results. Basing experimental conditions on measurements in the field may provide a more realistic understanding of how marine biota are likely to react to pollutant exposure during heavy rainfall events. Salinity and herbicide concentrations in the field, as well as exposure times, may differ from those tested in this study and are likely to influence whether organisms such as Cassiopea sp. can tolerate more extreme rainfall events. The lowest salinity conditions tested in this study were based on heavy rainfall events that typically occur 3 or 4 times per year within the region. However, rarer and more extreme flood events may reduce salinity even further and consequently reduce concentrations of atrazine via dilution. 47 Indeed, if Cassiopea sp. were exposed to lower salinity conditions in combination with the atrazine concentrations tested here, Cassiopea sp. may be more vulnerable to heavy rainfall events. Furthermore, differences in flushing rates and tidal regimes between different coastal ecosystems (e.g. open coasts vs coastal lagoons) is likely to influence the time it takes ecosystems to recover following heavy rainfall events. The same level of rainfall, therefore, may be more detrimental for populations in poorly-flushed coastal lagoons than in coastal embayments. Accurately predicting how Cassiopea sp. will respond in other coastal ecosystems and during more extreme flooding events thus requires investigating a wider range of salinity and herbicide concentrations than tested here, as well as investigation into the effects of herbicides other than atrazine. Our observations that medusae contained atrazine, des-ethyl atrazine and des-isopropyl atrazine concentrations at Day 13 of the experiment suggests that atrazine was retained and metabolised during the recovery period. Total atrazine concentrations at the end of the experiment, however, were small relative to the total atrazine they were exposed over the course of the experiment. At Day 13 of the experiment medusae had significantly higher concentrations of des-ethyl atrazine than atrazine (in its original form) and des-isopropyl atrazine. These results are probably due to des-ethyl atrazine being considerably less hydrophilic (with a cLogP value of 1.31) than des-isopropyl (cLogP value of 0.99) and, therefore, less likely to be excreted by Cassiopea sp. medusae during the recovery period (see Janicka et al., 2006). Although atrazine degradation products remained in medusae at the end of the experiment, medusae began to recover quickly from Day 4 onwards and no negative effects on photosynthetic efficiency or behaviour were observed after Day 10 of the experiment. These observations suggest that concentrations of atrazine, des-ethyl atrazine and desisopropyl at Day 13 of the experiment had limited effects on photosynthetic efficiency and behaviour. 48 Knowledge of the direct effects of des-isopropyl atrazine and des-ethyl atrazine on photosystem II and other physiological processes in the marine environment is limited (but see, Tchounwou et al., 2000, Magnusson et al., 2010). Magnusson et al. (2010) investigated the effects of atrazine and des-ethyl atrazine on benthic microalage and reported that des-ethyl atrazine inhibited YII but was less toxic than its original atrazine form. To more accurately assess the effects of atrazine on photosystem II and other biological processes we must now investigate the pathway by which atrazine is absorbed, metabolised and excreted. While medusae may tolerate some pollutants in their tissues, pollutants may exert sub-lethal effects that could make medusae more susceptible to other environmental stressors and so the interactive effects of pollutants and their degradation products with other environmental stressors should be considered. Magnusson et al., 2010) Our results demonstrate that Cassiopea sp. medusae can tolerate the salinity and herbicide conditions that typically occur in mild to moderate rainfall events but that they may not survive heavy rainfall events with high levels of atrazine runoff. Rainfall events that reduce salinity and increase exposure to pollutants such as atrazine, therefore, may be a major driver of the population dynamics of Cassiopea sp. Our study, however, examined the response of medusae to simulated rainfall events and other stages of the life history may respond differently. Indeed if the polyps can persist during heavy rainfall events then they could restock populations of medusae following extreme rainfall events. Importantly our results do not support previous claims that jellyfish are robust to environmental stressors and they highlight the need to examine the interactive effects of co-occurring stressors under environmentally relevant scenarios as a means of assessing the response of marine biota to changing ocean conditions. 49 Acknowledgements This work was funded by Griffith University and an Australian Post-graduate Award to SK. We thank F. Leusch, A. White, B. Matthews for technical support, B. 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Environmental monitoring and assessment, 187, 1-8. 54 Topp E, Mulbry WM, Zhu H, Nour SM, Cuppels D (2000) Characterization of striazine herbicide metabolism by a Nocardioides sp. isolated from agricultural soils. Applied and Environmental Microbiology, 66, 3134-3141. Vallotton N, Eggen RIL, Escher BI, Krayenbühl J, Chèvre N (2008) Effect of pulse herbicidal exposure on Scenedesmus vacuolatus: a comparison of two photosystem II inhibitors. Environmental Toxicology and Chemistry, 27, 13991407. 55 CHAPTER 3 Surviving but not thriving: inconsistent responses of zooxanthellate jellyfish polyps to ocean warming and future UV-B scenarios This chapter includes a published paper. My contribution involved: designing the study, conducting the experiments, data analysis, interpretation of results and writing the manuscript. The bibliographical details of the co-authored published paper, including all authors are: Klein SG, Pitt KA, Carroll AR (2016) Surviving but not thriving: inconsistent responses of zooxanthellate jellyfish polyps to ocean warming and future UV-B scenarios. Scientific Reports 6: 28859. (Signed) _____________________ Corresponding (1st) author: Shannon Klein (Countersigned) _____________________ Supervisor (and co-author): Kylie Pitt Please note: Supplementary material for this paper (Fig. S1) is included as an appendix. 56 57 58 59 60 61 62 63 64 65 CHAPTER 4 Symbiodinium mitigate the combined effects of hypoxia and acidification on a non-calcifying cnidarian This chapter includes an unpublished paper. My contribution involved: designing the study, conducting the experiments, data analysis, interpretation of results and writing the manuscript. The bibliographical details of the co-authored paper, including all authors are: Klein SG, Pitt KA, Nitschke MR, Goyen S, Welsh DT, Suggett DJ, Carroll AR (submitted) Symbiodinium mitigate the combined effects of hypoxia and acidification on a non-calcifying cnidarian. (Signed) _____________________ Corresponding (1st) author: Shannon Klein (Countersigned) _____________________ Supervisor (and co-author): Kylie Pitt 66 Abstract Hypoxia is a major anthropogenic stressor in many coastal regions. Hypoxic waters are depleted in O2 but simultaneously experience enhanced CO2 (and thus decreased pH) due to microbial respiration. Most studies of hypoxia, however, do not consider the potential interactive effects of low O2 and pH. During photosynthesis, Symbiodinium cells, the microalgal symbionts of cnidarians and other marine invertebrates, take up CO2 and produce O2 and thus potentially mitigate the negative effects of hypoxia and acidification. To test this hypothesis we therefore investigated the role of Symbiodinium in mitigating the potential interactive effects of hypoxia and acidification on a noncalcifying cnidarian by comparing asexual reproduction rates and the buffering capacity of symbiotic and aposymbiotic polyps of Cassiopea sp. jellyfish. We also measured the photosynthetic efficiency, Chl a content and Symbiodinium density of symbiotic polyps. Symbiotic and aposymbiotic polyps were exposed to two levels of dissolved oxygen (ambient, 6.0mgL-1, and hypoxic, 2.0mgL-1) and two levels of pH (ambient, pH 8.0, and low pH, pH 7.6) in a full factorial design. Acidification alone resulted in 58% more symbiotic polyps than aposymbiotic polyps suggesting that elevated CO2 stimulated Symbiodinium spp. and enhanced the fitness of Cassiopea sp. Symbiotic polyps exposed to combined hypoxia and acidification produced similar numbers of polyps to those exposed to ambient conditions, further suggesting that the presence of Symbiodinium mitigated the combined effects of hypoxia and acidification on asexual reproduction. The internal pH of aposymbiotic polyps reflected the pH of water they were exposed to, as did that of symbiotic polyps during the night, however, during the day, internal pH measurements of symbiotic polyps exposed to low pH conditions recovered to control levels. Similar to the results for asexual reproduction, Symbiodinium cell densities responded positively to acidification, but Chl a content per polyp and Symbiodinium Chl a per cell increased in response to the dual stressors. Symbiodinium clearly plays an important role in mitigating the combined effects of hypoxia and acidification on Cassiopea sp. polyps. Symbiodinium may also enhance the fitness of other cnidarian 67 hosts under hypoxic and more acidic conditions. Non-calcifying cnidarians, such as jellyfish and anemones, may therefore have a greater competitive advantage during hypoxic events. These findings have important implications for benthic ecosystems under changing environmental conditions. 68 Introduction Marine ecosystems are under increasing pressure from climate change and a suite of anthropogenic perturbations (Crain et al., 2008). Hypoxia (oxygen depletion) is one of these threats and hypoxic zones have been reported with increasing frequency in coastal ecosystems (Diaz & Rosenberg, 2008). Hypoxic zones are predicted to expand with growing human activities (Vaquer-Sunyer & Duarte, 2008, Altieri & Gedan, 2015) and hypoxia now represents one of the most severe threats to coastal marine ecosystems (Vaquer-Sunyer & Duarte, 2008, Chu & Tunnicliffe, 2015). Anthropogenic nutrient loads to coastal waters stimulates excessive production of organic matter (OM). The subsequent microbial remineralisation of OM depletes oxygen (O2) from the water column and can result in hypoxia (<2mg O2 L-1) (Cai et al., 2011). However, hypoxic waters are also more acidic because the carbon dioxide (CO2) produced during microbial respiration reduces pH through the formation and dissociation of carbonic acid (Gobler & Baumann, 2016). During these processes, CO2 and O2 levels are closely coupled in coastal waters and thus, hypoxia is concomitantly linked to a reduction in pH (Gobler et al., 2014). Despite hypoxia and acidification being tightly coupled in coastal waters, most experiments that investigate the potential impacts of hypoxia do not consider the effects of lowered pH. Instead, these experiments commonly sparge seawater with N2 gas to displace O2 (e.g. Wang & Widdows, 1991, Baker & Mann, 1994, Gracey et al., 2001, Eerkes-Medrano et al., 2013). Sparging with N2 gas, however, simultaneously displaces CO2 from the system which elevates pH, thereby forcing pH in a direction that is contrary to that observed in field scenarios (Gobler et al., 2014). To accurately assess the response of marine biota to hypoxia, we must closely mimic chemical changes that occur in the natural environment. 69 Our understanding of the effects of hypoxic conditions on biological responses is hindered by limited data on the potential interactive effects of hypoxia and acidification on marine biota (but see, Gobler & Baumann, 2016). Of the few studies that have examined the combined effects of hypoxia and acidification on marine organisms, most studies have focused on calcifying taxa and demonstrate variable responses to the dual stressors (e.g. Kim et al., 2013, Gobler et al., 2014, DePasquale et al., 2015, Jakubowska & Normant, 2015, Jansson et al., 2015). In one study, two species of bivalves, Argopecten irradians and Mercenaria mercenaria, were exposed to low DO (~36.5µM) and low pH (~7.53). Exposure to low DO alone inhibited the growth and metamorphosis of A. irradians, but not M. mercenaria. Exposure to hypoxia and acidification in combination, however, imposed more severe effects on A. irradians and reduced growth rates in M. mercenaria (Gobler et al., 2014). Another study found that intermittent exposure to lowered DO (5mgL-1) over 15 days did not reduce growth rates of juvenile abalone, Haliotis rufescens, but intermittent exposure to low DO and low pH (pH 7.65) in combination reduced growth rates (Kim et al., 2013). However, taken together, these studies generally suggest that the combined effects of hypoxia and acidification may be more severe than those of the individual stressors. Due to the competing influences of respiration and photosynthesis, hypoxic zones experience considerable diel fluctuations of DO and pH and these conditions may persist for weeks to months (Gobler & Baumann, 2016). Most manipulative experiments that investigate the effects of hypoxia, however, expose biota to constant levels of dissolved oxygen (DO) over days (e.g. Regnault & Aldrich, 1988) or weeks (e.g. Landry et al., 2007). Thus, knowledge of how marine biota may respond to diel fluctuations of pH and DO is limited. One study, however, investigated the effects of semi-diurnal fluctuations in DO and pH on two species of mytilid mussels and reported that although there was no effect of low DO, constant exposure to low pH (<7.6) over 8 70 days slowed development. Exposure to variable low pH (mean ± range: 7.51 ± 0.15), however, induced no negative effects (Frieder et al., 2014). In contrast, exposure to more extreme diel fluctuations (pH 7.2-7.9, DO 2.0-7.0 mgL-1) over 15 and 18 days resulted in higher larval mortality of the juvenile bivalves Argopecten irradians and Mercenaria mercenaria respectively, than exposure to constant levels of DO and pH (Clark, 2015). These results suggest that the duration and magnitude of changes to DO and pH influences the response of biota to hypoxic events and highlights the need to incorporate relevant diel shifts into manipulative experiments. Although marine animals may be negatively affected by elevated pCO2, non-calcifying marine plants may benefit. CO2 and bicarbonate ions (HCO3-) increase in concentration as waters become more acidic. These conditions may benefit marine plants because CO2 is essential for photosynthesis (Kroeker et al., 2010). Marine autotrophs can have effective carbon concentrating mechanisms (CCMs) that actively accumulate and concentrate inorganic carbon, either as CO2 or bicarbonate ions (HCO3-) or both (Raven & Beardall, 2003). Despite these mechanisms, marine algae can become carbon-limited and depend upon ambient CO2 and HCO3- in seawater (Raven & Beardall, 2003). Studies of a diverse range of marine plants, including benthic algae (Diaz-Pulido et al., 2007), phytoplankton (Tortell et al., 2008) and seagrass (Beer & Koch, 1996) consistently show that elevated pCO2 enhances rates of photosynthesis and growth. The observation that many animals are harmed by elevated pCO2 whilst plants benefit, poses an interesting notion for how invertebrates, including reef-building corals, hosting symbiotic dinoflagellates (e.g. Symbiodinium sp.) may respond to microbial-driven coastal hypoxia. Specifically, the presence of symbiotic microalgae may partially mitigate the effects of acidification because the CO2 utilised during photosynthesis may reduce the pCO2 within the host’s tissues, thereby regulating the pH of the tissues. 71 Photosynthetic symbionts also provide O2 to their animal host during photosynthesis and thus potentially ameliorate oxygen debt during hypoxic events (Malcolm & Brown, 1977). Indeed, Symbiodinium cells are intracellular symbionts and can exert significant control over pH (Laurent et al., 2013, Laurent et al., 2014) and DO within host tissues (Malcolm & Brown, 1977). However, Symbiodinium can only photosynthesise during the day and, therefore, their ability to mitigate the effects of hypoxia during the night may be limited. Of the studies that empirically examined the effects of low DO and high CO2, only one study has considered the effects on symbioses involving Symbiodinium. That study exposed two species of anemones (Anemonia alicemartinae and Phymactis papillosa) to constant levels of low DO (<3.1mgL-1) and a mild low pH (7.7-7.8) over 6 days and reported that while pH increased the metabolism of both species, low pH and low DO in combination depressed metabolism (Steckbauer et al., 2015). Although the effects of hypoxia and acidification on symbiotic associations have been studied, no studies have investigated the response of symbiotic and aposymbiotic (i.e. symbiont-free) individuals of the same species, to fully evaluate the role of Symbiodinium. To more accurately predict how marine biota may respond to hypoxic events we must discern the role(s) the host and/ or symbionts play in coping with the dual effects of hypoxia and acidification. The ability of symbiotic cnidarians to survive environmental stress will largely depend on their ability to adapt or acclimate to changing ocean conditions. Cnidarian hosts can harbour multiple clades with different physiological tolerances (Mieog et al., 2007, Jones et al., 2008). For example, hosts that form symbioses with physiologically tolerant clades such as Symbiodinium sp. of Clade D are more robust to thermal stress (Berkelmans & Van Oppen, 2006). Changes in the relative abundance of different clades is referred to as symbiont ‘shuffling’ (Jones et al., 2008). For example, the 72 dominant symbiont clade of Acropora millepora shifted from the thermally sensitive Symbiodinium C2 to D after transplantation into a warmer environment and resulted in a higher thermal tolerance of the association (Berkelmans & Van Oppen, 2006). Only by understanding the conditions in which physiologically tolerant symbiont genotypes may be selected for, is it possible to assess the potential for symbiotic cnidarians to acclimate to changing environmental conditions. The objective of this study was to investigate the role of Symbiodinium in mitigating the potential interactive effects of long-term hypoxia and acidification on a non-calcifying cnidarian. We compared the asexual reproduction and internal pH measurements of symbiotic and aposymbiotic polyps of a model host jellyfish (Cassiopea sp.) in a full factorial experimental design that consisted of lowered oxygen and pH. Specifically, we hypothesised that Cassiopea sp. polyps exposed to hypoxia and acidification individually and simultaneously would exhibit negative physiological effects but the negative effects of hypoxia and acidification would be, at least partially, mitigated by the presence of Symbiodinium. We also investigated the effects of hypoxia and acidification on the photosynthetic efficiency, Chl a concentration and Symbiodinium density of symbiotic Cassiopea sp. polyps. We hypothesised that in hospite Symbiodinium exposed to acidification would exhibit positive effects but when exposed to hypoxia Symbiodinium would exhibit negative effects. When exposed to the dual stressors, however, the negative effects of hypoxia would be mitigated by the positive effects of acidification on Symbiodinium. We also assessed the presence of Symbiodinium clade(s) in symbiotic polyps and whether they differed between treatments. We hypothesised that the composition of Symbiodinium communities within polyps would differ in response to hypoxia and acidification, individually and in combination. 73 Materials and methods Species studied Symbiotic and aposymbiotic polyps of the upside down jellyfish, Cassiopea sp. were used to test the hypotheses. Cassiopea sp. inhabit shallow waters in tropical and subtropical waters worldwide (Hofmann et al., 1996) and so are probably exposed to considerable fluctuations in DO and pH. Cassiopea sp. larvae that had settled on a rock in a jellyfish display tank at Underwater World, Sunshine Coast, Australia were collected in September 2013. Symbiotic polyps were sampled from the upper surface of the rock and aposymbiotic polyps that occurred in low light conditions were collected from the underside. Larvae of Cassiopea spp. are aposymbiotic and metamorphose into aposymbiotic polyps (Sachs & Wilcox, 2006). Aposymbiotic polyps can acquire Symbiodinium from the external environment, a process termed ‘horizontal transmission’ (Sachs & Wilcox, 2006, Thornhill et al., 2006). Aposymbiotic and symbiotic Cassiopea sp. polyps thus serve as ideal study organisms to examine the role of Symbiodinium (and hence host-Symbiodinium symbioses) in moderating the potential negative effects of stressors such as hypoxia and acidification on cnidarians. Experimental Approach All polyps were checked for the presence or absence of symbionts, using pulse amplitude modulated (PAM) fluorometry (as used by: Steindler et al., 2002, Lemloh et al., 2009) and fluorescence microscopy with UV Illumination, prior to the start of the experiment and every second day during the experiment. Polyps were acclimated to laboratory conditions by culturing them in seawater at 25ºC for 4 weeks prior to the commencement of the experiment. Fresh 10 µm filtered seawater was used to exchange seawater in the polyp cultures was sourced from The Gold Coast Seaway, Queensland (27.56ºS, 153.25ºE). The seawater was stored in darkness for at least 10 weeks prior to acclimation to ensure that polyps were not exposed to free-living Symbiodinium during 74 the experiment. During acclimation, all polyps were exposed to 12 hours of photosynthetic active radiation (PAR) using aquarium lights that mimicked the natural solar spectrum in coastal ecosystems, with the wave crest located in the blue spectrum (400-500nm). All polyps were fed newly hatched Artemia sp. nauplii every third day. The experimental design consisted of three orthogonal factors: pH (two levels: ambient (mean ±1SE, pH 7.97 ± 0.01) and low pH (pH 7.66± 0.01)), oxygen concentration (two levels: ambient (6.27mgL-1 ± 0.05) and hypoxic (2.46mgL-1 ± 0.06)) and polyp type (two levels: symbiotic and aposymbiotic). Four replicate aquaria were randomly allocated to each combination of pH, oxygen and polyp type (i.e. N=32). Levels and diel fluctuations of pH (~7.9- 8.15) and DO (~6.0 -6.7mgL-1) of control treatments were based on 24h field measurements taken in October, 2014 in Moreton Bay, Australia (27.13ºS, 153.07ºE). In hypoxic systems, the magnitude of diel fluctuations of pH and DO can vary specific to the ecosystem being tested. We, therefore, selected moderate levels of DO and diel variation (~1.5mgL-1- 3.0mgL-1) from a range of hypoxic scenarios in coastal ecosystems worldwide (e.g. Park et al., 2007, Tyler et al., 2009). Levels of DO and pH are stoichiometrically linked in marine ecosystems (Cai et al., 2011) and pH can vary between pH 6.9- 7.9 during hypoxic events (Gobler et al., 2014, Gobler & Baumann, 2016). We, therefore, selected moderate pH levels (~ 7.5-7.75) for the low pH treatments from a range of pH data collected from coastal hypoxic systems (e.g. Cai et al., 2011, Melzner et al., 2012, Gobler et al., 2014) (Fig. A4.1). The experiment was done in a controlled temperature laboratory with the ambient temperature set at 25ºC. Six polyps were transferred using a toothpick into small plastic petri dishes weighted with stainless steel weights that were immersed in 1L glass aquaria. Three petri-dishes were placed into each replicate aquarium (i.e. 18 polyps per aquarium); one petri dish was allocated for asexual reproduction measurements and the 75 other two were used for pH microelectrode and chlorophyll fluorescence measurements. One petri dish was allocated to each dependent variable (measured throughout the experiment) to prevent overcrowding of polyps and for ease of cleaning excess algal growth. Manipulation of water chemistry To achieve the desired water chemistry of each treatment, a series of gas mass controllers were used to deliver defined mixtures of CO2, N2 and O2 gas to seawater (sensu Bockmon et al., 2013). The desired gas compositions (CO2, N2, O2) were mixed from individual gas cylinders using four sets of three Omega® mass flow controllers (FMA-5400s, 0-20 mL/min (CO2), 0-5 L/min (N2), 0-2 L/min (O2)), which allowed for four independent treatments. The mass flow controllers were operated and functions monitored by a desktop PC running NI LabVIEW™ software (32-bit version) with communication using a voltage generating Omega Expandable Modular Data Acquisition System® (iNET-400) connected with three Omega® wiring boxes with screw terminals (iNET-510). The desired proportions of CO2, N2 and O2 were mixed in a stainless steel manifold and the subsequent gas line was split to provide identical gas mixtures to the replicate aquaria. Gas flow rates to replicate aquaria were manually adjusted using secondary stainless steel manifolds with control valves. For each treatment, two gas compositions (day and night) were used to closely mimic diel fluctuations in water chemistry in the field. NI LabVIEW™ was used to linearly transition between day and night gas mixtures but gas compositions were held constant at night and from 10am-2pm (Fig. A.4.1). The desired gas compositions for each treatment were continuously delivered to each aquarium using plastic air stones. Lids were placed loosely over each replicate aquarium with a header space of ~10mm to minimise evaporation and subsequent changes in 76 water chemistry. 25% of the water in each aquarium was replaced every day using water of the same chemistry. All aquaria were exposed to a 12 hours of light per day to accurately mimic diel patterns during summer. Analysis of carbonate chemistry Levels of pCO2 were calculated based on measured levels of total alkalinity (TA), pH, DO, temperature and salinity using the program CO2SYS (Lewis et al., 1998) (Table 4.1). Every third day, a 100mL water sample was collected for analysis of TA from one randomly selected replicate from each of the treatments. Samples were collected in clean glass amber bottles using a drawing tube, bottles were filled from the bottom and water allowed to overflow for 10-15 seconds to minimise gas exchange with the atmosphere. All samples were fixed with 20µL of mercuric chloride to prevent biological activity and stored at 4 C until analysed. All samples were analysed within 24 hours of collection. TA samples were analysed using an automatic 848 Titrino Plus Total Alkalinity Titrator (Metrohm©) calibrated every 3 days on the total scale using TRIS/HCl buffers in synthetic seawater. TA measurements on 50mL samples of certified reference material (provided by A. G. Dickson, batch #T27) were used to verify TA values. Every third day, temperature, salinity, pH and DO were measured at 10am (Table 4.1). Temperature was recorded in each aquarium using a thermometer and salinity was measured using a conductivity-salinity metre (TPS salinity-conductivity metre, MC-84). The DO concentration in each aquarium was recorded using an optic DO sensor (Mettler Toledo OptiOPx, Mettler Toledo Ltd). The pH of each aquarium was measured using a FiveGo pH meter (Mettler Toledo Ltd) equipped with a TRIScompatible electrode (Inlab Expert Pro Electrode, Mettler Toledo Ltd). Every 2-3 days, pH electrodes were calibrated using TRIS/HCl buffers in synthetic seawater. To accurately measure diel patterns of O2 and CO2 during the experiment, pH and DO measurements were taken hourly (between 6am-6pm) from one randomly selected replicate from each of the treatments once per week. 77 Data collection Asexual reproduction and internal pH of both symbiotic and aposymbiotic polyps were measured to investigate the role of Symbiodinium in moderating the effects of hypoxia and pH. We measured four response variables: photochemical efficiency (YII), Chl a content and Symbiodinium density on symbiotic polyps to further investigate the effects of hypoxia and acidification on symbiotic Cassiopea sp. polyps. Every third day, all reproduction dishes were removed from aquaria and the number of individual polyps were recorded using a dissecting microscope. Only when asexual buds had metamorphosed into individual polyps from the planuloid stage, were they counted and used as the dependent variable. 78 Table 4.1 Mean ± 1SE water chemistry measurements taken during the 22 day experiment. Temperature, salinity and pH measurements were taken at 10am every 3 days and TA and pCO2 measurements were taken weekly (Weeks 1, 2, 3, and 4). Treatment Temp (ºC) Salinity (ppt) Alkalinity (µeq kg -1) pH Oxygen (mg O2 L-1) Calculated pCO2 (µatm) Symbiotic Control 25.1±0.02 36.3±0.09 2299.06± 9.3 8.00±0.02 6.3±0.14 421.07±27.7 Hypoxic 25.1±0.03 36.2±0.07 2276.20±19.3 8.01±0.03 2.0±0.13 405.32±25.1 Low pH 25.1±0.02 36.2±0.07 2281.67±20.9 7.62±0.01 6.3±0.13 1151.36±48.3 Hypoxic & low pH 25.0±0.05 36.1±0.08 2267.18±30.6 7.63±0.02 2.3±0.20 1173.34±32.3 Control 25.1±0.02 36.3±0.08 2336.06± 7.3 8.01±0.03 6.2±0.19 410.01±28.6 Hypoxic 25.1±0.04 36.2±0.07 2249.87±22.6 8.02±0.02 2.2±0.26 402.03±32.3 Low pH 25.2±0.03 36.4±0.08 2303.82±10.6 7.61±0.01 6.5±0.18 1189.02±43.9 Hypoxic & low pH 25.0±0.06 36.3±0.08 2260.85±32.5 7.63±0.01 2.1±0.18 1186.25±41.9 Aposymbiotic 79 Internal pH measurements Every third day, one polyp was selected randomly from each replicate aquarium to measure internal pH. All polyps were collected with ~30mL of their respective treatment water and placed on a 30mm plastic petri dish under a dissecting microscope. The pH microelectrode (pH-25 Unisense, Denmark; 20-30µm tip diameter) was mounted on and controlled by a micromanipulator. The pH microelectrode was introduced into the treatment water and external pH measurements were taken ~5mm from the polyp. All microelectrode measurements were performed horizontally when polyps were upright (i.e. perpendicular to the microelectrode), halfway between the base of the polyp and the beginning of the oral arms, to ensure consistency of microelectrode profiles among all polyps. The epidermis formed a seal around the entrance point of the electrode and prevented fluid exchange between the external seawater and the polyp tissue. Polyps varied slightly in shape and size and so to ensure consistency, pH was recorded at four increments through one side of the polyp until the gastrovascular cavity was reached, yielding 6 measurements per polyp (i.e. external pH, increments 1-4, and gastrovascular cavity). Increments through the polyp were determined relative to the thickness of the body wall. Prior to pH measurements, the pH micro-electrodes were calibrated with pH 7 and 10 buffer solutions. The fluorescent pH sensitive dye, 5(6)-Carboxynaphthofluorescein (sourced from Sigma-Aldrich, CAS no: 128724-35-6), was used to validate pH microelectrode profiles using a fluorescent microscope. Polyps were incubated at 25ºC in their aquarium water supplemented with the fluorescent pH sensitive dye to a final concentration of 50 µmol L-1 5(6)-Carboxynaphthofluorescein for 30 minutes to allow sufficient uptake. Polyps were placed in 3mL vials and the pH-sensitive dye solution was allowed to overflow the vials into water baths at a rate of ~2mL min-1 to ensure gently mixing. Following staining, polyps were observed and photographed using a Nikon Eclipse 80i fluorescence microscope and UV Illumination. 80 Photochemical efficiency (YII) of Symbiodinium Prior to the commencement of the experiment, and at weekly intervals throughout the experiment, symbiotic polyps were sampled to measure photochemical efficiency of Symbiodinium using a ToxY-Pulse amplitude modulator (ToxY-PAM). Prior to fluorescence measurements, one polyp from each replicate aquarium was transferred into an individual well of a black, non-binding 96-well plate (Greiner Bio-One GmbH, cat no. 655090). All polyps were dark-adapted for 20 minutes prior to PAM measurements. The ToxY-PAM repeatedly measured several photosynthetic parameters of Symbiodinium under dark conditions. Repetitive measurements of the Chl a fluorescence parameters yielded a measure of the minimum (F0) and maximum fluorescence yield (Fm), from which the effective quantum yield (YII) was determined (Genty et al., 1989). Symbiodinium density and Chl a measurements At the end of the experiment, four polyps were sampled from each replicate aquarium containing symbiotic polyps and stored in 1mL of 0.22µm filtered seawater. Polyps were macerated with a tissue homogeniser for 30s and a 100µL aliquot was taken from each sample for Symbiodinium counts. 100µL of glycerol was added to each 100µL aliquot and samples frozen at -80ºC until analysed. Defrosted samples were mixed and ten 0.10µL drops from each sample were counted using a Neubauer haemacytometer. The remaining 900µL samples were used for estimates of Chl a content. All Chl a samples were centrifuged at 3000 × ɡ at 4ºC for 10 minutes and the supernatant discarded. The pelleted Symbiodinium were resuspended in 95% ethanol and extracted overnight in the dark at 4ºC overnight before being centrifuged. Absorption of the supernatant was determined at 647nm and 664nm using a UV-1800 Shimadzu© 81 spectrophotometer. All samples were analysed in 1cm quartz cuvettes and the instrument was calibrated using 95% ethanol blanks. Chl a content was determined using coefficients from a spectrophotometric equation (-5.2007 × A647 + 13.5275 ×A664) for chlorophytes in ethanol (see Ritchie, 2006). Identification of Symbiodinium At the end of the experiment, ten polyps from each replicate aquarium containing Symbiodinium were sampled and stored in DMSO preservation buffer (Seutin et al., 1991). The samples were washed twice with phosphate buffered saline (PBS) and the total DNA was extracted using the MO BIO PowerPlant Pro DNA Isolation Kit (MO BIO Laboratories, CA, USA, cat no. 13400-50) following the manufacturers beadbeating protocol with an extra phenolic separation step. The Symbiodinium partial 5.8S, ITS2, and partial 28S region was amplified by PCR using the forward ITS-dino (5′GTGAATTGCAGAACTCCGTG 3′) and reverse ITS2-rev2 (5′CCTCCGCTTACTTATATGCTT 3′) primers (Stat et al., 2011). ITS2 amplicons were purified through gel electrophoresis, sequenced by the Australian Genome Research Facility (AGRF), and compared to Symbiodinium entries in NCBI using the Basic Local Alignment Search Tool (BLAST), yielding a % match. Sequences retrieved by this study were deposited in NCBI under the accession numbers KX533944 through KX533954 (Table A4.2). Statistical analyses The dependent variables of internal pH and YII, were analysed using repeated measures linear mixed models (LMMs) in SPSS (SPSS, Released 2013). The number of fixed factors for each dependent variable differed according to how the data were collected. The fixed factors for internal pH were: pH (pH 8.0 and pH 7.6), oxygen (6.0mgL-1 and 82 2.0mgL-1), polyp type (symbiotic and aposymbiotic), day/ night (day and night), and distance (through polyp) (increments: 0-6), which was the repeated measure. The fixed factors for YII were: pH (pH 8.0 and pH 7.6), oxygen (6.0mgL-1 and 2.0mgL-1), and time (days 0-22), which was the repeated measure. The dependent variables of number of polyps, Chl a and Symbiodinium density, were analysed using LMMs. The fixed factors for number of polyps were: pH (pH 8.0 and pH 7.6), oxygen (6.0mgL-1 and 2.0mgL-1), and polyp type (symbiotic and aposymbiotic). The fixed factors for Chl a and Symbiodinium density were: pH (pH 8.0 and pH 7.6) and oxygen (6.0mgL-1 and 2.0mgL-1). In all repeated measures LMMs, various models (e.g. AR(1), AR(1) heterogeneous, CS) were investigated to assess the model of best fit by comparing several goodness-of-fit statistics (e.g. -2 Restricted Log Likelihood, Akaike’s Information Criteria (AIC) and Bayesian Information Criterion (BIC)). All data were checked for normality and homoscedasticity using standardised residual plots and Q-Q plots and if required, data were either ln or ln(x+1) transformed. If significant differences were found, estimated marginal means were used to determine which means differed. 83 Results Survival and asexual reproduction All polyps of Cassiopea sp. survived throughout the experiment and numbers of polyps increased in all treatments. At the end of the experiment, the number of polyps differed among pH treatments but patterns were not consistent between symbiont treatments, resulting in a significant pH × symbiont interaction (Table 4.2, Fig. 4.1). The greatest number of polyps were produced by symbiotic polyps under low pH conditions with symbiotic polyps producing 58% more polyps than aposymbiotic polyps. Under ambient conditions, aposymbiotic polyps produced 17% fewer polyps than symbiotic polyps (Fig. 4.1). The number of polyps also differed among oxygen treatments and 22% fewer polyps occurred in hypoxic treatments (mean ± 1SE: 9.63 ± 0.53) compared to ambient treatments (12.25 ± 0.67), regardless of pH conditions or symbiont status (Table 4.2). Symbiotic polyps exposed to low pH and low oxygen produced a similar number of polyps (12.25 ± 0.41) to those exposed to ambient conditions (13.25 ± 0.54). Strobilation was not observed during the experiment. 84 Table 4.2 Summary of results for a LMMs analysis comparing the number of polyps between treatments at day 22 of the experiment. Df= Degrees of freedom. P values in bold are statistically significant (P < 0.05). BIC (Bayesian Information Criterion) =85.204, and AIC (Akaike’s Information Criterion) =84.026. Source Numerator df Denominator df F Sig. Symbiont 1 24 106.778 <0.001 Oxygen 1 24 49.00 <0.001 pH 1 24 0.111 0.742 Symbiont × Oxygen 1 24 1.000 0.327 Symbiont × pH 1 24 25.000 <0.001 Oxygen × pH 1 24 0.111 0.742 Symbiont × Oxygen × pH 1 24 0.111 0.742 Figure 4.1 Mean ±1SE number of polyps recorded at Day 22 of the experiment. Letters above error bars indicate similarities (e.g. AA) or differences (e.g. AB) between treatments, as determined by estimated marginal means. 85 Internal pH profiles The pH profile through polyp walls differed among pH treatments, but patterns were not consistent among symbiotic and aposymbiotic polyps and differed between day and night, resulting in a significant day/ night × symbiont × pH × distance interaction (Table 4.3, Fig. 4.2). During the night, pH profiles of the polyps mimicked their experimental conditions; were consistent across the external to internal body wall and did not differ between symbiotic and aposymbiotic polyps (Fig. 4.2a). During the day, in the symbiotic polyps, pH slowly increased from Increment 1 to Increment 4 through the polyp tissues and then decreased in the gastrovascular cavity to levels similar to that of the solution pH (Fig. 4.2b). Under ambient conditions, the internal pH of symbiotic polyps was greater than aposymbiotic polyps and the internal pH of symbiotic polyps increased by 0.19 units at Increment 4 relative to aposymbiotic polyps (Fig. 4.2b). This pattern was consistent in the low pH treatments, but the magnitude of difference between symbiotic and aposymbiotic polyps was greater. The internal pH of symbiotic polyps in the low pH treatment was highest at Increment 4 and increased by 0.27 units relative to aposymbiotic polyps (Fig. 4.2b). At Increment 4, the internal pH of symbiotic polyps matched the internal pH of aposymbiotic polyps under ambient conditions (Fig. 4.2b). There was no significant difference between the pH of the gastrovascular cavities of symbiotic and aposymbiotic polyps, but the pH levels of the gastrovascular cavity of polyps exposed to low pH conditions were reduced (Fig. 4.2b). 86 Table 4.3 Summary of results for a LMMs analysis comparing day and night pH microelectrode profiles between treatments at Day 22 of the experiment. The model-ofbest-fit was AR(1), BIC (Bayesian Information Criterion) = -1045.115, AIC (Akaike’s Information Criterion) = -1056.104. Note, only significant terms are presented in Table 4.3, refer to Table A4.1 for results of the full-factorial analysis. Df= Degrees of freedom. P values in bold are statistically significant (P < 0.05). Source Numerator df Denominator df F Sig. Day/ Night 1 47.916 192.545 <0.001 Symbiont 1 47.916 74.747 <0.001 pH 1 47.916 2366.626 <0.001 Day/ Night × Symbiont 1 47.916 61.419 <0.001 Day/ Night × pH 1 47.916 4.812 0.033 Symbiont × pH 1 47.916 10.856 0.002 Day/ Night × Symbiont × pH 1 47.916 6.528 0.014 Distance 5 145.035 70.592 <0.001 Day/ Night × Distance 5 145.035 29.885 <0.001 Symbiont × Distance 5 145.035 53.912 <0.001 pH × Distance 5 145.035 17.608 <0.001 Day/ Night × Symbiont × Distance 5 145.035 49.310 <0.001 Day/ Night × pH × Distance 5 145.035 19.436 <0.001 Symbiont × pH × Distance 5 145.035 8.137 <0.001 Day/ Night × Symbiont × pH × Distance 5 145.035 6.370 <0.001 87 Figure 4.2 Mean (±1SE) pH profiles through polyp walls taken during the night (a) and day (b). Letters next to data points indicate similarities (e.g. AA) or differences (e.g. AB) between treatments, as determined by estimated marginal means. 88 Photochemical efficiency The temporal variation of YII values among pH treatments was not consistent among oxygen treatments, resulting in a significant oxygen × pH × time interaction (Table 4.4, Fig. 4.3). At Day 1, there was no difference in YII values among treatments. The magnitude of difference between treatments was small and although significant differences were detected, no consistent patterns were observed (Fig. 4.3). Figure 4.3 Mean (±1SE) effective quantum yield during the 22 day experiment. Letters next to data points indicate similarities (e.g. AA) or differences (e.g. AB) between treatments, as determined by estimated marginal means. 89 Symbiodinium identification, Chl a content and cell density Symbiodinium ITS2 sequences from all replicate aquaria, except for one replicate sample in the control treatment that could not be sequenced, were confirmed to match Symbiodinium ITS2 subtype C1 (NCBI Genbank accession KX533944- KX533954 for ITS2 sequences generated in this study) (Table A4.2). At the end of the experiment, the Chl a content of individual polyps varied among pH treatments, but patterns were not consistent among oxygen treatments and resulted in a significant pH × oxygen interaction (Fig. 4.4a, Table 4.5). Chl a content was highest in polyps in the low pH, hypoxic treatment (32% higher than the ambient treatment). Under low pH conditions polyp Chl a contents were similar in the ambient DO and hypoxic treatments. (Fig. 4.4a). Under ambient pH conditions, however, polyps in the hypoxic treatment had the lowest Chl a content of all the treatments and contained 48% less Chl a than those in the ambient DO treatment (Fig. 4.4a). The density of Symbiodinium cells within individual polyps varied between pH treatments, but patterns were inconsistent across oxygen treatments, resulting in a significant pH × oxygen interaction (Fig. 4.4b, Table 4.5). The Symbiodinium density in polyps in the low pH ambient DO treatment was 39% higher than those under ambient conditions and was higher than that of all other treatments (Fig. 4.4b). Symbiodinium specific Chl a content per cell differed among pH treatments, but inconsistent responses across oxygen treatments resulted in a significant pH × oxygen interaction (Fig. 4.4c, Table 4.5). Symbiodinium Chl a per cell was highest in the low pH and hypoxic treatment and exceeded that of all other treatments. Within the ambient pH level, exposure to hypoxic conditions resulted in a 55% lower Chl a per cell 90 concentration relative to the control treatment (Fig. 4.4c). This pattern was reversed, however, in the low pH treatments where the Chl a per cell was 53% higher under hypoxic and low pH, than under low pH conditions (Fig. 4.4c). 91 Table 4.4 Summary of results for a LMMs analysis comparing YII values between treatments during the 22 day experiment (Days 0, 1, 4, 7, 10, 13, 16, 19, 22). The model-of-best-fit was CS, BIC (Bayesian Information Criterion) = -501.960, AIC (Akaike’s Information Criterion) = -507.325. Df= Degrees of freedom. P values in bold are statistically significant (P < 0.05). Source Numerator df Denominator df F Sig. Oxygen 1 45.197 1.251 0.269 pH 1 45.197 1.929 0.172 Time 8 60.422 1.311 0.255 Oxygen × pH 1 45.197 2.780 0.102 Oxygen × Time 8 60.422 3.655 0.002 pH × Time 8 60.422 0.911 0.514 Oxygen × pH × Time 8 60.422 2.392 0.026 Table 4.5 Summary of results for three LMMs comparing Chl a (µg polyp-1), Symbiodinium density (cell polyp-1) and Chl a cell-1 (pg) between treatments of symbiotic polyps at Day 22 of the experiment. Df = degrees of freedom. BIC= Bayesian Information Criterion and AIC = Akaike’s Information Criterion. P values in bold are statistically significant (P < 0.05). Variable Chl a polyp-1 Symbiodinium polyp-1 Chl a cell-1 Transformation None Ln None Information Criterion BIC= -22.192 BIC= 10.359 BIC= 61.675 AIC= -22.676 AIC= 9.874 AIC= 61.190 Source of variation Df P P P pH 1 <0.001 0.131 0.050 Oxygen 1 pH × Oxygen 1 F=23.008 F=2.633 F=4.727 0.418 0.124 0.499 F=0.705 F=2.730 F=0.485 0.007 0.047 0.002 F=10.516 F=5.095 F=16.385 92 Figure 4.4 Mean (±1SE) Chl a polyp-1 (a) Symbiodinium cells polyp-1 (b) Chl a cell-1 (c) at Day 22 of the experiment. Letters above error bars indicate similarities (e.g. AA) or differences (e.g. AB) between treatments, as determined by estimated marginal means. 93 Discussion The pattern of asexual reproduction supported the hypothesis that the presence of Symbiodinium would mitigate the effects of acidification on Cassiopea sp. polyps, but not the hypothesis that the symbionts would mitigate the effects of hypoxia. Interestingly, however, symbiotic polyps exposed simultaneously to both hypoxia and acidification produced a similar number of polyps to those grown under ambient conditions, suggesting that the presence of Symbiodinium mitigated the effects of the dual stressors. This pattern appeared to occur because the benefits conferred by elevated CO2 offset the negative effects of hypoxia. Indeed, if we had only investigated the effect of low DO we would have concluded that hypoxia reduced the asexual reproduction of both symbiotic and aposymbiotic polyps. Our observations suggest, however, that symbiotic cnidarians that have similar physiological tolerances to Cassiopea sp. may still thrive when hypoxia and acidification co-occur those that are non-symbiotic may decline in response to the dual stressors. These results highlight the importance of investigating the effects of co-occurring stressors and how symbiotic and non-symbiotic biota may respond differently to environmental stressors. The survival of marine organisms in hypoxic systems may partly depend on their ability to regulate their internal pH under lowered pH conditions that result from elevated dissolved inorganic carbon (DIC) concentrations. During the day, under low pH conditions, the internal pH of symbiotic polyps matched the pH levels of aposymbiotic polyps exposed to ambient conditions, and suggests that photosynthesis of Symbiodinium may play an important role in regulating the internal pH of symbiotic cnidarians during hypoxic events. Aposymbiotic polyps, however, conformed to the pH of their respective treatments, and this suggests that Cassiopea sp. polyps, as hosts, may be limited in their ability to regulate their internal pH under low pH conditions. Only one study has compared the internal pH of isolated symbiotic and non-symbiotic coral cells under elevated CO2 conditions. That study reported that short term exposure to 94 decreasing pH (from pH 7.8 to 6.8) (over ~2hrs) caused the internal pH of nonsymbiotic coral cells to decrease by 0.3-0.4 pH units but the internal pH of symbiotic coral cells recovered to control levels (Gibbin et al., 2014). These results demonstrate that Symbiodinium may exert significant control over the internal pH of host tissues and suggest that symbiotic biota may be more robust to hypoxic environments than nonsymbiotic biota. The survival of symbiotic organisms ultimately depends on the physiological limitations of both the host and their symbionts. Photochemical efficiency of Symbiodinium appeared to be unaffected by the various treatments tested. Despite lower YII values than those reported in Chapter 3 and 2, our observations of Chla and Symbiodinium densities suggest that Symbiodinium proliferated under experimental conditions. Densities of Symbiodinium were highest in the low pH treatment, and, similar to the result for asexual reproduction, suggests that low pH conditions (caused by elevated DIC) may be favourable for Symbiodinium. The observation that Symbiodinium densities increased under high CO2 conditions relative to ambient conditions, suggests that Symbiodinium of Cassiopea sp. polyps may be limited by the availability of inorganic carbon under these conditions. Exposure to low pH and low DO simultaneously did not increase densities of Symbiodinium, however, Chl a content and Chl a per cell increased in response to the dual stressors. Although studies that examine the response of Symbiodinium to the combined effects of hypoxia and acidification are limited, observations of other cnidarians exposed to high CO2 conditions demonstrate inconsistent responses of Symbiodinium density and Chl a content (e.g. Reynaud et al., 2003, Crawley et al., 2010, Towanda & Thuesen, 2012, Gabay et al., 2013). For example, high CO2 conditions increased chlorophyll content in the calcifying coral Acropora formosa but did not increase the density of Symbiodinium (Crawley et al., 2010). However, similar to the results of the current study, acidification increased symbiont densities in the scleractinian coral Stylophora pistillata but did not increase 95 chlorophyll per cell (Reynaud et al., 2003). Differences in results may be due to species-specific responses and highlight the complex responses of cnidarian associations to changing environmental conditions. Our understanding of the responses of marine biota to hypoxic conditions is hindered because the majority of hypoxia studies manipulate O2 levels with N2 gas (Gobler & Baumann, 2016), thereby increasing (up to pH 8.6, see Gobler et al., 2014) and not decreasing pH. In the current study, the fitness of symbiotic polyps appeared to be enhanced by acidification under hypoxic conditions, suggesting that studies that do not account for concurrent changes in O2 and CO2 may produce results that do not accurately reflect the response of symbiotic biota to hypoxic environments. Aposymbiotic polyps, however, were negatively affected by hypoxia regardless of the pH conditions they were exposed to, suggesting that acidification did not exacerbate the effects of low oxygen availability. Our observations of aposymbiotic polyps are inconsistent with the only other study to examine the interactive effects of low DO and pH on non-symbiotic, non-calcifying cnidarians (two species of anemones (Anemonia alicemartinae and Phymactis papillosa) (Steckbauer et al., 2015). Although both anemones are naturally non-symbiotic (unlike Cassiopea sp.), the study demonstrated that exposure to acidification alone increased the metabolism of A. alicemartinae and P. papillosa but exposure to acidification and hypoxia in combination depressed metabolism of both species. However, we cannot determine whether our results are consistent with other studies that mimic hypoxia using N2 gas because we did not expose aposymbiotic polyps to low DO and high pH in combination; for this, studies will need to further compare the response of biota to low DO and high pH in combination to those exposed to hypoxia in isolation to assess the reliability of results obtained by studies of hypoxia that manipulate O2 levels with N2 gas. 96 Cnidarians that host Symbiodinium can demonstrate flexibility in the composition of their Symbiodinium communities (Baker, 2003, Thornhill et al., 2006, Putnam et al., 2012). The ‘holobiont’ may contain genetically distinct symbionts with physiologies that withstand environmental stress and thus can potentially confer a fitness benefit to the host (Little et al., 2004, Berkelmans & Van Oppen, 2006). In this study we detected Symbiodinium subtype C1, which is described as a generalist symbiont (LaJeunesse, 2005) and has been observed in symbiosis with >100 genetically distinct host species, including Cassiopea (LaJeunesse, 2002, Tonk et al., 2013). Although we did not detect any Symbiodinium types or subtypes other than C1, cryptic, non-dominant Symbiodinium may be present at levels below the detection thresholds of techniques used in the current study. During environmental change or significant stress, a background population of Symbiodinium spp. at low levels in Cassiopea sp. polyps could ‘shuffle’ (sensu Baker, 2003) and reorganise in relative abundance according to differences in competitive abilities or survivorship under ‘new’ conditions. Although symbiont shuffling could occur over short time-frames (Lewis & Coffroth, 2004) it is likely that substantial symbiont rearrangement, in the absence of bleaching conditions (i.e. thermal stress), requires a longer time frame than the one tested here. If, however, Cassiopea sp. polyps harbour only one Symbiodinium type, they may rely on the uptake of new symbiont types from the environment to change their symbiont population (termed symbiont ‘switching’, sensu Baker, 2003). Experimental conditions in the current study did not introduce exogenous Symbiodinium cells and therefore polyps of Cassiopea sp. could not have acquired new symbiont types during the experiment unless symbionts were shared horizontally between individual polyps (see Sachs & Wilcox, 2006). To more accurately predict how symbiotic cnidarians, as a group, may respond to hypoxia and acidification we must also consider other possible mechanisms in which hosts may acquire more resistant symbionts, including types that are known to be physiologically adapted to extreme environmental conditions (Brading et al., 2011). 97 Various combinations of host and symbiont type may provide physiological advantages under changing ocean conditions. Our observations suggest that Cassiopea sp. harbouring Symbiodinium subclade C1 responded positively to acidification and were unaffected by hypoxia and acidification in combination. Although studies of the effects of hypoxia and acidification on inhospite Symbiodinium are limited, our results are consistent with other studies that investigated the effects of acidification on other Symbiodinium types. Indeed, high CO2 conditions stimulated the productivity of two anemones, Anthopleura elegantissima and Anemonia viridis, harbouring Symbiodinium clade B and A19, respectively (Suggett et al., 2012, Towanda & Thuesen, 2012). To better determine how biota may respond to hypoxia and acidification, we must now determine whether our results for Symbiodinium C1 and Cassiopea sp. polyps are consistent with other symbiont types and hosts, and investigate possible interactions between other environmental stressors. Indeed, Cassiopea spp. harbour other clades of Symbiodinium including A, B and D (Santos et al., 2002, Thornhill et al., 2006, Mellas et al., 2014), and whether our observations here scale to other Cassiopea species, life history stages, and/or symbiont types remains to be tested. Early life history stages of many marine invertebrates require an exogenous stimulant to metamorphose into later life history stages (e.g. Fleck & Fitt, 1999, Tran & Hadfield, 2013, Tebben et al., 2015). Indeed, marine bacteria on degraded mangrove leaves of Rhizophora mangle provide a natural cue for metamorphosis of Cassiopea xamachana larvae (Fleck & Fitt, 1999). The lack of strobilation of Cassiopea sp. polyps observed in the current study could, therefore, be attributed to lack of natural environmental cues under laboratory conditions. We, therefore, advocate that for experiments to accurately assess the potential effects of hypoxia and acidification on Cassiopea sp. populations, and perhaps also other cnidarians, experiments need to consider the potential role of natural metamorphosis cues and thus, the role of metamorphosis in restocking adult populations. 98 Our observations of Cassiopea sp. polyps suggest that Symbiodinium may play an important role in mitigating the combined effects of hypoxia and acidification on cnidarians. 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Wang W, Widdows J (1991) Physiological responses of mussel larvae Mytilus edulis to environmental hypoxia and anoxia. Marine Ecology Progress Series, 70, 223236. 105 CHAPTER 5 Pre-exposure to individual, but not simultaneous, climate change stressors allow Irukandji jellyfish polyps to cope under future conditions This chapter includes an unpublished paper. My contribution involved: designing the study, conducting the experiments, data analysis, interpretation of results and writing the manuscript. The bibliographical details of the co-authored paper, including all authors are: Klein SG, Pitt KA, Carroll AR (submitted) Pre-exposure to individual, but not simultaneous, climate change stressors allow Irukandji jellyfish polyps to cope under future conditions. (Signed) _____________________ Corresponding (1st) author: Shannon Klein (Countersigned) _____________________ Supervisor (and co-author): Kylie Pitt 106 Abstract Ocean warming and acidification are occurring concurrently on a global scale. With growing awareness of the potential devastating effects of warming and acidification on marine species, researchers have investigated the immediate effects of end-of-century scenarios on marine species. An emerging area of research, however, suggests that biota may become more robust to climate change stressors over time. Here we pre-exposed polyps of an Irukandji jellyfish to elevated temperature (28ºC) and low pH (7.6), separately and in combination. We then subsequently exposed polyps to either current (pH 8.0, 25ºC) or future conditions (pH 7.6, 28ºC) during a secondary exposure to assess potential phenotypic plastic responses that may allow Irukandji polyps to persist under changing ocean conditions. Daughter polyps were separated from original parent polyps after 10 days of pre-exposure to assess whether asexual offspring could benefit from parental pre-exposure to acidification and warming. We measured rates of asexual reproduction, respiration, prey capture and total protein concentrations of polyps. Polyps exposed to future conditions had higher rates of respiration regardless of the conditions they were pre-exposed to, suggesting that metabolic rates will probably be higher under future conditions. Pre-exposure to elevated temperature and low pH individually appeared to mitigate the negative effects of future conditions on asexual reproduction, protein concentrations and prey capture rates of polyps. Pre-exposure to low pH and elevated temperature in combination, however, resulted in reduced rates of asexual reproduction, prey-capture and protein concentrations under future conditions relative to polyps in the control treatment. Observations that parent and daughter polyps responded similarly to the various treatments tested suggest that short-term preexposure of parent polyps to elevated temperature and low pH did not confer any benefit to daughter polyps under future conditions. These observations demonstrate that acclimation can occur over short time-scales and be important in the persistence of marine species under future warming and acidification conditions. 107 Introduction Global climate change has had profound impacts on marine ecosystems and is predicted to adversely affect animal physiology (Doney et al., 2012), change geographic distributions of marine species (Hoegh-Guldberg & Bruno, 2010) and affect ecosystem functioning (Best et al., 2015, Albright et al., 2016). With growing awareness of the vulnerability of marine biota to climate change, many manipulative experiments have exposed biota to end-of-century predictions for warming and ocean acidification as a means of assessing their responses to climate change (Munday et al., 2013, Munday, 2014). These studies have documented negative effects on behaviour (Nagelkerken & Munday, 2015, Nagelkerken et al., 2016), physiology (Portner, 2008), growth and reproduction of marine species (Harvey et al., 2013). There is an emerging evidence, however, that biota may become more robust to changing ocean conditions over time (Munday et al., 2013, van Oppen et al., 2015). Marine biota may become more robust to changing ocean conditions through genetic adaptation and non-genetic processes such as acclimation (or acclimatization) (Munday, 2014). Genetic adaptation is defined as a change in the average phenotype from one generation to another through natural selection (see Munday, 2014, van Oppen et al., 2015) and is hypothesised to facilitate the persistence of marine species in the face of climate change (Bell, 2013, Logan et al., 2014). Genetic adaptation, however, typically occurs over many generations and thus is difficult to test in most metazoans. More rapid mechanisms such as non-genetic acclimation (see Munday, 2014), however, can occur over shorter timescales such as weeks (e.g. Bellantuono et al., 2011) and months (e.g. Form & Riebesell, 2012) and is also considered to be a major determinant of the persistence of marine species (Somero, 2005). Acclimation refers to the phenotypic plastic responses in morphology, physiology or behaviour that occur under new environmental conditions that help maintain fitness of biota (Angilletta, 2009). An emerging area of research demonstrates that pre-exposure (or preconditioning) to 108 environmental stress may induce phenotypic plastic responses that occur within a single generation (intra-generational acclimation) (e.g. Brown et al., 2002, Middlebrook et al., 2008) that help biota maintain fitness when exposed to the same environmental conditions. These phenotypic plastic responses can be passed across generations. Indeed, biota exposed to environmental stress may produce offspring that are more robust to the same environmental stress (termed: trans-generational acclimation) (e.g. Donelson et al., 2012, Miller et al., 2012). Studies that consider the ability of marine species to acclimate or adapt to climate change will provide the most realistic understanding of how biota are likely to respond to future conditions. Most studies that have examined the ability of marine species to acclimate to future ocean conditions pre-expose (or precondition) biota to individual climate change stressors (e.g. Bellantuono et al., 2011, Miller et al., 2012, Towle et al., 2016). Those that have examined the potential for intra-generational acclimation to warming demonstrate that pre-exposure to elevated temperature can induce phenotypic plastic responses and benefit marine organisms when they are subsequently exposed to warmer conditions (e.g. Middlebrook et al., 2008, Bellantuono et al., 2011). For example, Acropora aspera preconditioned to elevated temperature (over 48 h) had higher concentrations of photoprotective compounds and greater photosynthetic efficiency than corals that were not preconditioned during a 6-day simulated thermal bleaching event (Middlebrook et al., 2008). Although studies of intra-generational acclimation to acidification are limited, organisms exposed to elevated pCO2 can produce offspring that are more robust to future acidification conditions (e.g. Miller et al., 2012, Murray et al., 2014). For example, the negative effects of acidification on juvenile anemone fish (Amphiprion melanopus) were absent in those whose parents that had been previously exposed to elevated CO2 conditions (Miller et al., 2012). One unique study investigated the role of intra-generational acclimation to elevated pCO2 in mitigating the negative effects of warming and acidification in combination (Towle et al., 2016). Corals of 109 Porites porites pre-exposed to high CO2 conditions (26ºC, 900ppm CO2) exhibited 44% lower calcification rates when exposed to future conditions (31ºC, 900ppm CO2) relative to those in the control treatment (26ºC, 390ppm CO2). Corals pre-exposed to high CO2 conditions, however, exhibited no negative effects on calcification when exposed to acidification in isolation (26ºC, 900ppm CO2) (Towle et al., 2016). These observations demonstrate that pre-exposure to individual climate change stressors may induce phenotypic plastic responses that help biota cope when exposed to the same conditions. Despite the co-occurrence of warming and acidification in marine systems only one study has examined the potential role of pre-exposure to warming and acidification in combination in mitigating the negative effects of future conditions (Putnam & Gates, 2015). That study, which examined trans-generational acclimation, pre-conditioned adult corals of Pocillopora damicornis to ambient (26.5 ºC, 417 µatm pCO2) and future conditions (28.9 ºC, 805µatm pCO2). Larvae of adults pre-conditioned to ambient and future conditions were then subsequently exposed to either ambient or future conditions in a secondary exposure. Larvae from adult corals pre-conditioned to future conditions shrank when they were subsequently exposed to future conditions, relative to those that were subsequently transferred in to ambient conditions. The respiration rates of larvae from adults pre-conditioned to ambient conditions did not differ between ambient and future conditions. Conversely, respiration rates of larvae from adults pre-conditioned to future conditions were higher when exposed to future conditions than those in ambient conditions, suggesting that pre-conditioning of adults to future conditions resulted in greater metabolic acclimation of larvae (Putnam & Gates, 2015). Putnam & Gates (2015) pre-exposed P. damicornis to warming and acidification in combination to simulate the most likely future scenario of simultaneous stressors. Although these results suggest that pre-exposure to warming and acidification in combination may allow biota to acclimate to future conditions, it still remains unclear whether warming, 110 acidification or the stressors in combination induce physiological changes that may help biota to acclimate to future conditions. Trans-generational acclimation may play an important role in the survival of biota under changing ocean conditions, however, rapid intra-generational acclimation (i.e. within a sexual generation) may be particularly important for marine organisms that rely mostly on asexual reproduction and have long-generation times (Sunday et al., 2014, van Oppen et al., 2015). Phenotypic plastic changes that occur in response to changing environmental conditions can occur rapidly within a single generation (e.g. Bay & Palumbi, 2015) and may be passed to asexually reproduced clones (van Oppen et al., 2015). Although data are limited in marine species, stress-induced changes and their heritability between asexual generations has been observed in terrestrial plants (Verhoeven et al., 2010). Indeed, exposure to environmental stress over 10-13 weeks induced epigenetic changes in the asexual dandelion Taraxacum officinale. After 10-13 weeks of exposure, genetically identical offspring of T. officinale were collected and kept under ambient conditions. Although the offspring of T. officinale were not exposed to environmental stress, they exhibited the same epigenetic markers as their pre-exposed parents (Verhoeven et al., 2010). These results demonstrate that environmental stress can induce phenotypic plastic responses that can be successfully transmitted to asexual offspring. We must now determine whether asexually produced offspring may benefit from parental preconditioning under changing ocean conditions. Of all marine species that may acclimate to changing ocean conditions venomous Irukandji jellyfish are of major concern because of their severe socioeconomic impacts on coastal communities. Irukandji jellyfish, a group of at least six species, cause a suite of debilitating symptoms known as Irukandji syndrome (Little & Seymour, 2003) and 111 are responsible for two deaths and hundreds of hospitalizations in north Queensland, Australia (Fenner & Hadok, 2002, Huynh et al., 2003). Northern Australia is a ‘hotspot’ for Irukandji jellyfish but they also occur in many locations worldwide including parts of the continental United States (Grady & Burnett, 2003), Hawaii (Yoshimoto & Yanagihara, 2002) and Caribbean (Pommier et al., 2005). Despite their potential to cause severe socioeconomic effects under changing ocean conditions, only one study has examined the interactive effects of warming and acidification on jellyfish (Klein et al., 2014). That study examined the interactive effects of acidification and warming on the Irukandji jellyfish, Alatina nr mordens. The study reported that although warming enhanced asexual reproduction, rates of budding were much slower under low pH conditions (pH 7.6) suggesting that polyp populations may not thrive in the future (Klein et al., 2014). These results suggest that although jellyfish may survive future warming and acidification conditions, they are unlikely to thrive or benefit from changing ocean conditions. Here we examine the role of pre-exposure to elevated temperature and low pH separately and in combination, in potentially mitigating the effects of future ocean conditions on Irukandji jellyfish polyps of Alatina nr mordens. This study consisted of two parts – (1) the pre-exposure phase that exposed polyps to elevated temperature and elevated CO2 conditions in an orthogonal design and (2) the secondary exposure, which subsequently exposed pre-exposed polyps to either ambient or future conditions. We measured rates of asexual reproduction, respiration, feeding and protein concentrations of polyps during the secondary exposure. Specifically, we hypothesised that polyps preexposed to ambient conditions would exhibit negative effects on rates of asexual reproduction, respiration, feeding and protein concentrations when exposed to future 112 conditions. However, pre-exposure to low pH and elevated temperature (separately and simultaneously) would mitigate the negative effects of future conditions rates of asexual reproduction, respiration, feeding, and protein concentrations of polyps. To assess whether pre-exposure of parent polyps would benefit asexual offspring we separated asexually produced daughter polyps from original parent polyps and exposed them to either future or current conditions. We hypothesised that rates of asexual reproduction, respiration, feeding and protein concentrations of daughter polyps would be higher than those of parent polyps under future conditions. 113 Methods Species studied A. nr mordens polyps originated from planula larvae that were collected from adult medusae sampled from spawning aggregations at Osprey Reef, Australia (13.92°S, 146.63°E) in 2005. Eight A. nr mordens polyps were transferred into 48 glass petri dishes and single polyps were transferred into 24 12.01mL glass vials (for respiration measurements) using a stainless steel dissecting probe. Polyps were acclimated to laboratory conditions for 4 weeks at 25ºC under low light conditions (to prevent overgrowth of algae). The experiment was done in a controlled temperature laboratory with the ambient temperature set at 22ºC so that the temperature of all replicate aquaria could be raised to their respective temperature treatments using aquarium heaters. Polyps were fed newly hatched Artemia sp. nauplii every third day throughout the experiment. Pre-exposure phase The pre-exposure phase consisted of two orthogonal factors: temperature (two levels: current (mean ±1SE, 25ºC± 0.01) and future (28ºC± 0.01)) and pH (two levels: current (pH 8.0± 0.02) and future (pH 7.6±0.01)). Nominal future pH and temperature conditions (pH 7.6, 28ºC) were based on RCP8.5 pathway projections for ca. 2100 (IPCC, 2014). To accurately mimic natural environmental conditions in coastal ecosystems we exposed polyps in all treatments to diel fluctuations of pH that were based on 24h field measurements taken in October, 2014 in Moreton Bay, Australia (27.13ºS, 153.07ºE). Six 1 L glass aquaria, each containing two polyp dishes (i.e. sixteen polyps in total) and one respiration vial, were randomly allocated to each combination of treatments (i.e. n=24). Each replicate aquarium was gently aerated and partially submerged within an individual 5 L water bath. Lids were placed loosely over each aquarium with a header space of ~20mm to minimise evaporation. Aquarium 114 heaters placed in the water baths maintained the desired temperatures within 0.4ºC and aerators circulated water and maintained an even distribution of heat within the water bath. Approximately 20% of seawater within each replicate aquarium was replaced every second day. All aquaria were kept in darkness to prevent algal growth except when polyps were being maintained, ca. 2 h per day. Each day, polyp dishes were removed from all aquaria and polyps were checked for new buds. To ensure that parents had been exposed to their respective pre-exposure treatments for a reasonable time, only daughter polyps produced after 10 days were used in the secondary exposure. Daughter polyps were transferred into separate glass dishes and were randomly assigned to new aquaria that were maintained at the same experimental conditions as their respective treatments (i.e. parent and daughter polyps were maintained in separate aquaria). Similarly, daughter polyps produced in the respiration vials after 10 days were transferred into glass vials filled with 10µm filtered seawater for measurements of respiration and also placed in separate aquaria. At the end of the pre-exposure phase there were 48 replicate aquaria which consisted of 24 aquaria containing parent polyps and 24 aquaria containing daughter polyps. The pre-exposure phase ran for 14 days. Experimental approach of the secondary exposure The secondary exposure consisted of four orthogonal factors: temperature pre-exposure (two levels: ambient (25ºC) and high temperature (28ºC)), pH pre-exposure (two levels: pH 8.0 and pH 7.6), asexual generation (two levels: parent polyps, daughter polyps) and climate scenario (two levels: current-day (pH 8.0, 25ºC,) and future (pH 7.6, 28ºC)). Prior to the commencement of the secondary exposure, the number of polyps in each dish and respiration vial were counted and, if necessary, any additional polyps that had budded were removed until only four polyps remained in each dish and one polyp 115 remained in each respiration vial to ensure consistency among replicate aquaria. Three replicate 1L glass aquaria, each containing two polyp dishes (i.e. a total of 8 polyps in total) and one glass vial, were assigned to each of their respective treatment combinations (i.e. total n= 48). Within each replicate aquarium, one polyp dish was allocated for asexual reproduction measurements and at the end of the secondary exposure, both polyps dishes were used for measurements of total protein and prey capture rates. Two polyp dishes were allocated to each replicate aquarium to prevent overcrowding of polyps and for ease of cleaning excess algal growth. Manipulation and analysis of water chemistry To achieve the desired water chemistry conditions of each treatment a series of gas proportioners were used to deliver CO2, N2 and O2 gas to seawater. The desired gas compositions were mixed from individual gas cylinders using twelve Omega® mass flow controllers (FMA-5400s, 0-20 mL/min (CO2), 0-5 L/min (N2), 0-2 L/min (O2)). Two sets of three mass flow controllers were used to deliver gas mixtures to each pH treatment (pH 8.0 and pH 7.6). The mass flow controllers were operated and functions monitored by a desktop PC running NI LabVIEW™ software (32-bit version) with communication using a voltage generating Omega Expandable Modular Data Acquisition System® (iNET-400) connected with three Omega® wiring boxes with screw terminals (iNET-510). After the three gases were mixed in the desired proportion for each treatment the gases were then combined in a stainless steel manifold before the gas line was split, providing identical gas mixtures to the replicate aquaria. Flow rates to replicate aquaria were manually adjusted using secondary stainless steel manifolds with control valves. For both pH treatments, two gas compositions (i.e. day and night) were determined to closely mimic diel fluctuations in water chemistry in the natural environment (Fig. A5.1). NI LabVIEW™ software was used to linearly transition between the day and night gas mixtures but gas compositions were held constant at night time (6pm-6am) and between the hours of 10am-2pm (Fig. A5.1). 116 Every third day, temperature, salinity, pH and DO were measured at midday. Salinity and temperature were measured in each aquarium using a conductivity-salinity metre (TPS salinity-conductivity metre, MC-84) and thermometer, respectively. The DO concentration in each aquarium was recorded using an optic DO sensor (Mettler Toledo OptiOPx, Mettler Toledo Ltd) and exceeded 85% O2 saturation in all replicates throughout the experiment. The pH of each aquarium was measured using a FiveGo pH meter (Mettler Toledo Ltd) equipped with an Inlab Expert Pro Electrode (Mettler Toledo Ltd). Every 2-3 days, pH electrodes were calibrated using TRIS/HCl buffers in synthetic seawater. To accurately measure diel patterns of pH during the experiment, pH measurements were taken hourly (between 6am-6pm) from one randomly selected replicate from each of the treatments once per week. Levels of pCO2 were calculated based on measured levels of Total Alkalinity (TA), pH, DO, temperature and salinity using the program CO2SYS (Lewis et al., 1998) (Table 5.1). Every third day, a 100mL water sample was collected for analysis of TA from one randomly selected replicate from each of the treatments. 100mL samples of seawater were collected in clean glass amber bottles using a drawing tube and overfilled for 10 seconds to minimise gas exchange between the sample water and the atmosphere. All samples were filtered through 0.22µm filters, spiked with 20µL of mercuric chloride, sealed tightly and stored at 3ºC to prevent biological activity until samples were analysed. All TA samples were analysed using a Mettler Toledo T50 Automatic Titrator, which was calibrated on the total scale using TRIS/HCl buffers in synthetic seawater. TA measurements on 50mL samples of certified reference material (provided by A. G. Dickson, batch #138) were used to verify TA values. 117 Table 5.1 Mean ± 1SE water chemistry measurements taken during the 34 day experiment. Temperature, salinity and pH measurements were taken at 10am every 3 days and TA and pCO2 measurements were taken weekly (Weeks 1, 2, 3, 4 and 5). Temp (ºC) Salinity (ppt) Alkalinity (µeq kg -1) pH Calculated pCO2 (µatm) Ambient 25.1±0.02 35.2±0.05 2246.13± 8.6 8.00±0.01 409.95±34.4 High temp 28.1±0.03 34.8±0.06 2246.20±22.1 8.01±0.02 415.52±28.1 Low pH 25.1±0.02 34.2±0.08 2213.46±16.3 7.62±0.02 1162.25±38.3 High temp, low pH 28.0±0.04 35.3±0.03 2217.18±28.6 7.60±0.01 1182.08±31.2 Ambient 25.2±0.03 35.3±0.08 2258.04± 10.3 8.01±0.03 407.01±32.6 High temp 28.1±0.04 35.2±0.09 2259.72±16.6 8.00±0.02 411.43±26.4 Low pH 25.0±0.06 34.9±0.06 2236.73±18.6 7.61±0.01 1108.02±46.1 High temp, low pH 28.1±0.03 35.0±0.03 2280.85±28.5 7.59±0.03 1156.35±38.9 Treatment Secondary exp- Current Secondary exp- Future 118 Data collection Four response variables were measured: asexual reproduction, respiration, protein concentration, and prey capture rate. Each day, during the pre-exposure phase, polyps were removed from aquaria and viewed under a dissecting microscope and the number of polyps and their developmental stage (i.e. polyp; budding or partial fission; or juvenile medusae) was recorded. During the secondary exposure, polyps were counted every third day and at the end of the experiment polyp dishes in each replicate aquarium were removed to count and collect polyps for estimations of total protein and rates of prey capture. Respiration measurements The respiration rates of polyps in all replicate aquaria were measured at Days 1, 4, 14, 24 and 34 using a Unisense PA200 Picoammeter equipped with a 20-30µm tip O2 microsensor (OX-25 Unisense, Denmark). Single polyps were settled in 12.01mL borosilicate glass vials. One control (blank) vial was also placed in each replicate aquarium to account for the respiration of bacterial communities and other microorganisms that had formed during the experiment. All glass vials were sealed with double wadded caps designed for multi-sampling and were partially submerged in temperature-controlled water baths that were heated to the same temperature as their respective thermal treatments. The seawater was 0.22µm filtered and of the same water chemistry as their respective treatments. Water within each vial was gently mixed during the incubation and was never <70% O2 saturation. O2 concentrations were determined using a linear equation calculated from a two-point calibration curve (pA at 100% and 0% O2 saturation). For all replicate vials, oxygen consumed by the corresponding blank vials were subtracted from polyp vials to obtain respiration rates of polyps (ng O2 polyp-1 h-1). 119 Protein estimation Ten polyps from each replicate aquarium were transferred into pre-labelled cryogenic centrifuge tubes that contained a cocktail of protease inhibitors (P8340, Sigma-Aldrich) to inhibit protein degradation, diluted to a volume ratio of 1:100 (inhibitor: TRIS buffer). The QuantiPro™ bicinchoninic acid (BCA) kit (QPBCA, Sigma-Aldrich) was used to measure protein concentrations and bovine serum albumin (BSA, 1.0mg mL-1 in 0.15M NaCl with 0.05% sodium azide, Sigma-Aldrich) was used as the protein standard. For standard curve determinations, BSA standards (0.5 to 30 µgmL-1) were prepared in TRIS and NaCl (artificial seawater) buffers. All samples (in TRIS buffer) that formed a precipitate were centrifuged after colour development and the absorbance of the supernatant measured. The absorbance of all samples at 562nm was measured against a blank using a UV spectrophotometer (UV-1800, Shimadzu). We compared the standard curves of TRIS and NaCl buffer standards and confirmed that the formation of the precipitate in TRIS buffer samples did not affect colour development, and thus did not affect protein estimations of polyp samples. Measurements of prey capture rates At the end of the secondary exposure, four polyps from each replicate aquarium were transferred into individual wells of a 96-well plate. Artemia sp. nauplii were used as prey to examine the prey capture rate of polyps. Each well contained 10µm filtered seawater. Polyps were allowed ~1 hour to acclimate to well conditions. During the acclimation period, seawater was partially replenished every 10 minutes to maintain normoxic conditions. Approximately 15 Artemia sp. nauplii were added to each well, and the time and exact number of nauplii added to each well was recorded. Polyps were allowed 20 minutes to feed before the number of remaining prey was recorded in each well. Prey capture rates of polyps from each replicate aquarium were summed across the 120 four polyp wells for statistical analyses (i.e. the unit of replication was the average % prey captured across the four polyp wells for each aquarium). Statistical analyses The dependent variables, number of polyps, protein concentration (ng polyp-1) and prey capture rates (% prey captured) at Day 34, in all treatments were analysed using linear mixed models (LMMs) in SPSS (SPSS, Released 2013). The four fixed factors were: temperature pre-exposure, pH pre-exposure, asexual generation and climate scenario. The dependent variable respiration (ng O2 polyp-1 h-1) in all treatments was analysed using repeated measures linear mixed models (LMMs). The five fixed factors were: temperature pre-exposure, pH pre-exposure, asexual generation, climate scenario, and time, which was the repeated measure. A range of models were investigated to assess the model of-best-fit by comparing various goodness-of-fit statistics (-2 log likelihood, AIC, and BIC). For all analyses, data were checked for normality and homoscedasticity using standardised residual and Q-Q plots and if required, data were either ln or ln(x+1) transformed. If significant differences were found, estimated marginal means were used to determine which means differed. 121 Results Survival and asexual reproduction All polyps of A. nr mordens survived the secondary exposure and the number of polyps increased in all treatments. There was no difference between parent and daughter polyps for any of the response variables tested (Table 5.2, 5.3). At the end of the secondary exposure, there was substantial variability in the number of polyps produced among treatments, resulting in a significant pH × temp × climate scenario interaction (Table 5.2, Fig. 5.1). Polyps pre-exposed to ambient conditions produced 56% fewer polyps when exposed to future conditions than polyps that remained in ambient conditions. In contrast, polyps pre-exposed to high temperature and low pH individually and in combination, produced a similar numbers of polyps regardless of whether they were subsequently exposed to ambient or future conditions (Fig. 5.1). Overall, polyps preexposed to low pH produced a similar number of polyps when exposed to future conditions to those in the control treatment but substantially more polyps than the treatment that had been pre-exposed to ambient conditions and transferred to future conditions. Polyps pre-exposed to elevated temperature produced 29% fewer polyps when exposed to future conditions relative to those in the control treatment but 52% more than the treatment that had been pre-exposed to ambient conditions and transferred to future conditions. Polyps pre-exposed to the stressors simultaneously, however, produced approximately 43% fewer polyps than those in the control treatment, regardless of whether they had been transferred to ambient or future conditions (Fig. 5.1). 122 Table 5.2 Summary of results of a LMMs analysis comparing the number of polyps, protein concentrations (ng polyp-1) and prey capture rates (% captured) between treatments at Day 34 of the experiment. Df= Degrees of freedom. P values in bold are statistically significant (P < 0.05) Data were ln transformed. Variable Number of polyps Protein (ng polyp-1) Prey capture (% captured) Transformation Ln Ln (x+1) None Information Criterion BIC= 20.014 BIC= -23.569 BIC= 268.723 AIC= 17.083 AIC= -26.500 AIC= 265.792 Source of variation Df Denominator Df P P P pH 1 32 0.593 0.207 <0.001 F=0.298 F=1.729 F=33.844 0.144 0.079 <0.001 F=2.355 F=3.509 F=16.828 0.281 0.242 0.483 F=1.244 F=1.474 F=0.503 0.001 0.190 0.022 F=16.157 F=1.872 F=5.754 <0.001 0.002 0.703 F=21.258 F=13.547 F=0.148 0.491 0.644 0.502 F=0.496 F=0.222 F=0.462 0.001 0.512 0.196 F=16.421 F=0.449 F=1.743 0.221 0.968 0.214 F=1.619 F=0.002 F=1.609 0.055 0.039 0.005 F=4.280 F=5.082 F=9.178 0.580 0.419 0.853 F=0.320 F=0.689 F=0.035 0.545 0.123 0.781 F=0.383 F=2.657 F=0.079 0.026 0.016 <0.001 F=6.026 F=7.216 F=16.528 0.302 0.172 0.534 F=1.140 F=2.049 F=0.395 0.652 0.061 0.890 F=0.211 F=4.064 F=0.019 0.720 0.964 0.159 F=0.134 F=0.002 F=2.080 Temp Parent/ daughter Climate scenario pH × Temp pH × Parent/ daughter pH × Climate scenario Temp × Parent/ daughter Temp × Climate scenario Parent/ daughter × Climate scenario pH × Temp × Parent/ daughter pH × Temp × Climate scenario 1 1 1 1 1 1 1 1 1 1 1 pH × Parent/ daughter × Climate scenario 1 Temp × Parent/ daughter × Climate scenario 1 pH × Temp × Parent/ daughter × Climate scenario 1 32 32 32 32 32 32 32 32 32 32 32 32 32 32 123 Figure 5.1 Number of polyps (mean ±1SE) recorded at Day 34 of the secondary exposure (n=48). Letters above data points indicate similarities (e.g. AA) and differences (e.g. AB) among all treatments, as determined by estimated marginal means. Respiration rates The temporal variation in respiration rates differed among treatments, resulting in a significant pH × climate scenario × day interaction (Table 5.3, Fig. 5.2a, b). Overall, respiration rates were higher under future conditions compared to ambient conditions, regardless of whether polyps had been pre-exposed to low or ambient pH (Fig. 5.2a, b). The only exception was for Day 1 of the secondary exposure where respiration rates did not differ between ambient and future conditions for polyps pre-exposed to ambient conditions (Fig. 5.2a). Polyps pre-exposed to ambient pH had respiration rates that were ~63% higher under future conditions than those in ambient conditions (Fig. 5.2a). Similarly, after Day 1 of the secondary exposure, respiration rates of polyps preexposed to low pH were ~52% higher when exposed to future conditions than those under ambient conditions (Fig. 5.2b). 124 Table 5.3 Summary of results of a repeated measures LMMs analysis comparing respiration rates of polyps between treatments throughout the experiment (Days 1, 4, 14, 24 and 34). Df= Degrees of freedom. P values in bold are statistically significant (P < 0.05). Data were ln transformed. Source Numerator df Denominator df F Sig. pH 1 32 0.380 0.542 Temp 1 32 1.148 0.292 Parent/ daughter 1 32 0.886 0.354 Climate scenario 1 32 159.453 <0.001 pH × Temp 1 32 0.128 0.723 pH × Parent/ daughter 1 32 0.768 0.387 pH × Climate scenario 1 32 0.886 0.354 Temp × Parent/ daughter 1 32 1.948 0.172 Temp × Climate scenario 1 32 0.659 0.423 Parent/ daughter × Climate scenario 1 32 0.305 0.585 pH × Temp × Parent/ daughter 1 32 0.237 0.630 pH × Temp × Climate scenario 1 32 0.178 0.676 pH × Parent/ daughter × Climate scenario 1 32 0.085 0.772 Temp × Parent/ daughter × Climate scenario 1 32 1.148 0.292 pH × Temp × Parent/ daughter × Climate scenario 1 32 1.443 0.239 Day 4 128 2.294 0.063 pH × Day 4 128 1.227 0.303 Temp × Day 4 128 0.499 0.736 Parent/ daughter × Day 4 128 0.400 0.808 Climate scenario × Day 4 128 0.472 0.756 pH × Temp × Day 4 128 0.514 0.726 pH × Parent/ daughter × Day 4 128 0.601 0.662 pH × Climate scenario × Day 4 128 3.901 0.005 Temp × Parent/ daughter × Day 4 128 0.571 0.684 Temp × Climate scenario× Day 4 128 0.914 0.458 Parent/ daughter × Climate scenario × Day 4 128 0.445 0.776 pH × Temp × Parent/ daughter × Day 4 128 0.339 0.851 pH × Temp × Climate scenario × Day 4 128 0.212 0.932 pH × Parent/ daughter × Climate scenario × Day 4 128 0.088 0.986 Temp × Parent/ daughter × Climate scenario × Day 4 128 0.356 0.840 pH × Temp × Parent/ daughter × Climate scenario× Day 4 128 1.555 0.190 125 Figure 5.2 Respiration rates of polyps (mean ±1SE) pre-exposed to ambient pH (a) and low pH (b) conditions recorded at Days 1, 4, 14, 24 and 34 of the secondary exposure (Days 1-34, n=48). Letters above data points indicate similarities (e.g. AA) and differences (e.g. AB) among all treatments, as determined by estimated marginal means. 126 Protein concentrations At the end of the secondary exposure, protein concentrations varied substantially among treatments, resulting in the pH × temp × climate scenario interaction (Table 5.2, Fig. 5.3). At the end of the secondary exposure, polyps pre-exposed to ambient conditions had 55% lower protein concentrations when exposed to future conditions than polyps that remained in ambient conditions. Conversely, polyps pre-exposed to high temperature and low pH individually and in combination had similar protein concentrations regardless of whether they were exposed to ambient and future conditions (Fig. 5.3). Overall, pre-exposure to high temperature and low pH individually appeared to mitigate the negative effects of future conditions on protein concentrations because the protein content of these polyps was greater than for the polyps that had been pre-exposed to ambient conditions and transferred to future conditions. Polyps pre-exposed to the dual stressors, however, had 48% lower protein concentrations when exposed to future conditions than those in the control treatment. The response of these polyps was no different to the polyps raised in ambient conditions but transferred to future conditions (Fig. 5.3). 127 Figure 5.3 Protein concentrations (mean ±1SE) of polyps sampled at Day 34 of the secondary exposure (n=48). Letters above data points indicate similarities (e.g. AA) and differences (e.g. AB) among all treatments, as determined by estimated marginal means. Rates of prey capture At the end of the secondary exposure, prey capture rates of polyps varied substantially among treatments, which resulted in a significant pH × temp × climate scenario interaction (Table 5.2, Fig. 5.4). Polyps pre-exposed to ambient conditions exhibited similar rates of prey capture when exposed to future conditions to those that remained in ambient conditions (Fig. 5.4). Similarly, polyps pre-exposed to high temperature and low pH individually, exhibited similar rates of pre-capture regardless of whether they were subsequently exposed to ambient or future conditions. In contrast, polyps preexposed to low pH and high temperature in combination exhibited 75% lower prey capture rates than those that were subsequently exposed to ambient conditions (Fig. 5.4). Overall, polyps pre-exposed to high temperature and low pH individually had (on 128 average) 32% lower prey capture rates than those in the control treatment, regardless of the conditions they were subsequently exposed to. These polyps, however, produced ~65% more polyps than the treatment that had been pre-exposed to the dual stressors and remained in future conditions. Polyps that were pre-exposed to high temperature and low pH in combination and remained in future conditions were exposed to the dual stressors for an overall longer period of time than other treatments and exhibited lower prey-capture rates than those in all other treatments (Fig. 5.4). Figure 5.4 % prey captured (mean ±1SE) recorded at Day 34 of the secondary exposure (n=48). Letters above data points indicate similarities (e.g. AA) and differences (e.g. AB) among all treatments, as determined by estimated marginal means. 129 Discussion Observations of A. nr mordens polyps supported the hypothesis that pre-exposure to low pH and elevated temperature separately would mitigate the negative effects of future conditions. Under future conditions, polyps pre-exposed to low pH had similar protein concentrations and produced a similar number of polyps to those in the control treatment and more than polyps pre-exposed to ambient conditions and transferred to future conditions, suggesting that pre-exposure to low pH alone mitigated the negative effects of future conditions. Polyps pre-exposed to elevated temperature had similar protein concentrations when exposed to future conditions to those in the control treatment. Rates of asexual reproduction, however, were slightly lower under future conditions relative to polyps in the control treatment but still higher than those preexposed to ambient conditions and transferred to future conditions. The moderate number of polyps produced in this treatment suggest that pre-exposure to elevated temperature partly mitigated the negative effects of future conditions on asexual reproduction. These results suggest that pre-exposure to elevated temperature and low pH individually may allow polyps to acclimate to future conditions over short time scales. Observations of polyps pre-exposed to low pH and elevated temperature in combination did not support the hypothesis that pre-exposure to the stressors in combination would mitigate the negative effects of future conditions. Polyps pre-exposed to the stressors in combination had lower protein concentrations and lower rates of asexual reproduction when exposed to future conditions relative to those in the control treatment. Consequently, pre-exposure to the dual stressors did not mitigate the negative effects of future conditions and polyps may not thrive in response to dual stressors. Indeed, if this study had only investigated the effects of pre-exposure to the stressors individually, results of this study would have suggested that Irukandji polyps could acclimate to future conditions and thrive in the future. These results suggest, however, that Irukandji 130 polyps may reproduce at a slower rate in response to the dual stressors. These observations highlight the importance of investigating how pre-exposure to multiple stressors may confer effects that differ from those when biota are pre-exposed to the stressors individually. Marine organisms may acclimate to future conditions by altering the relative amount of energy allocated to metabolic processes to maintain fitness (Sunday et al., 2014). Although studies of the effects of warming and acidification on physiological trade-offs in marine organisms are limited, observations of biota exposed to acidification demonstrate that marine organisms may acclimate to high CO2 conditions by reallocating energy to different functions (e.g. Reipschläger & Pörtner, 1996, Pörtner & Bock, 2000, Michaelidis et al., 2005). Indeed, exposure to low pH conditions (pH 7.76.8) over 40 days increased rates of calcification and respiration in the brittle star Amphiura filiformis (Wood et al., 2008). These compensatory mechanisms, however, coincided with the partial resorption of arm muscles of A. filiformis and suggests that while the upregulation of metabolism and calcification may potentially mitigate the effects of acidification conditions on A. filiformis, these mechanisms may come at a substantial cost because of elevated energy demands under elevated pCO2 conditions (Wood et al., 2008). In the current study, respiration rates of polyps were higher under future conditions regardless of the conditions that polyps were pre-exposed to. Our observations that rates of respiration increased under future conditions are consistent with the ‘principal’ effect of warming on respiration in other marine invertebrates (including jellyfish; e.g. Fitt & Costley, 1998, Møller & Riisgård, 2007, Gambill & Peck, 2014). Observations of asexual reproduction and protein concentrations, however, demonstrate that only pre-exposure to the stressors individually mitigated the negative effects of future conditions. Pre-exposure to the stressors individually probably induced physiological changes that allowed polyps to cope under future conditions, but polyps pre-exposed to the dual stressors may have re-allocated energy away from reproduction 131 and protein synthesis to support basal maintenance costs under future conditions. Although the current study did not investigate specific compensatory mechanisms, these results further support the observations that marine organisms may increase metabolic rates to compensate for the additional energy expenses of basal maintenance under changing ocean conditions. (Calow, 1991, Pörtner et al., 2006, Willmer et al., 2009, Sokolova, 2013). The ability of marine species to acquire and assimilate food may ultimately determine their ability to support basal maintenance costs and survive under changing ocean conditions (Sokolova, 2013). Indeed, reduced rates of feeding and assimilation may decrease the fitness of biota under climate change conditions because there is less energy available for growth and reproduction after energy is allocated to maintaining basal maintenance. For example, consumption rates of the sea urchin Lytechinus variegatus increased when temperature was elevated to (29ºC) but decreased when exposed to 31ºC (Lemoine & Burkepile, 2012). Respiration rates of L. variegatus, however, increased exponentially with increasing temperature (20-31ºC). Reduced consumption rates and elevated rates of metabolism under more extreme temperature conditions (31ºC) reduced the ingestion efficiency of L. variegatus by ~50% and was hypothesised to reduce overall fitness (Lemoine & Burkepile, 2012). In the current study, polyps pre-exposed to high temperature and low pH in combination, had the lowest food consumption rates when exposed to future conditions, and, similar to the results of asexual reproduction and protein concentrations, suggest that basal maintenance costs of polyps will probably be higher in response to the dual stressors and ultimately reduce rates of asexual reproduction. We, therefore, advocate that for experiments to accurately predict the response of marine organisms over longer-time frames, they should measure multiple physiological responses to assess potential tradeoffs that may lead to overall reductions in fitness. 132 Parent and daughter polyps responded similarly to the various treatments tested. These observations do not support the hypothesis that pre-exposure of parent polyps to elevated temperature and low pH would confer benefits to daughter polyps under future conditions. We cannot determine whether non-genetic changes were passed on to genetically identical offspring because this study did not identify potential non-genetic mechanisms (such as the transmission of specific proteins and hormones) or epi-genetic factors (e.g. DNA methylation) because they typically require advanced whole transcriptomic approaches (e.g. Moya et al., 2012, Barshis et al., 2013, Pespeni et al., 2013a, Pespeni et al., 2013b). To better determine whether genetically identical offspring inherit phenotypic plastic response from parents that are pre-exposed to climate change stressors we must now identify potential non-genetic mechanisms and epi-genetic markers that may allow asexual offspring to benefit from parental preexposure. Observations that pre-exposure to the combined effects of low pH and elevated temperature did not mitigate the effects of future conditions on A. nr mordens polyps contrast with those of the only other study to examine whether preconditioning to warming and acidification in combination could mitigate the negative effects of future conditions (Putnam & Gates, 2015). Preconditioning of the adult coral, P. damicornis, to constant levels of elevated temperature and low pH over 1.5 months resulted in greater metabolic acclimation of larvae under future conditions than those of adults that were preconditioned to ambient conditions. (Putnam & Gates, 2015). These results suggest that trans-generational acclimation may play an important role in the persistence of marine species under the effects of the dual stressors. Results of the current study, however, suggest that although polyps of A. nr mordens pre-exposed to the dual stressors survived they may have a limited ability to acclimate to the combined effects of warming and acidification within a single generation. P. damicornis may have acclimated to the combined effects of warming and acidification because symbiotic 133 dinoflagellates (such as Symbiodinium) can exert significant control over the internal pH of host tissues (Chapter 4, Gibbin et al., 2014)) and thus, symbionts probably played an important role in mitigating the negative effects of acidification on P. damicornis. Consequently, differences in results between Putnam & Gates (2015) and those in the current study could be attributed to the absence of zooxanthellae in polyps of A. nr mordens. These observations highlight how symbiotic and non-symbiotic cnidarians may acclimate differently to warming and acidification in combination. The relative rates at which warming and acidification change are likely to determine whether Irukandji polyps, such as A. nr mordens, can thrive under future conditions. In the current study, pre-exposure to warming partly mitigated the negative effects of future conditions and low pH completely mitigated the negative effects of future conditions on A. nr mordens polyps. Although these results suggest that pre-exposure to acidification and warming individually could mitigate the negative effects of future conditions and potentially facilitate the proliferation of polyps, ocean acidification and warming are unlikely to occur in isolation over the next century (IPCC, 2014). Indeed, if polyps are exposed to warming and acidification concurrently, A. nr mordens are likely to survive but asexually reproduce at a slower rate under future ocean conditions. Marine biota are often subject to fluctuations in environmental conditions due to changes associated with tidal and diel cycles (Hofmann et al., 2011), nutrient input (Frieder et al., 2014) and seasonal extremes (Pennington & Chavez, 2000). In some cases, diel fluctuations in pH and temperature exceed future climate change projections (e.g. pH, Hofmann et al., 2011; and temperature, Oliver & Palumbi, 2011) and may act to precondition or pre-expose biota to elevated temperature and low pH conditions and thus biota may become more robust to future ocean conditions (Byrne & Przeslawski, 2013). To persist under future climate change conditions, however, phenotypic plastic responses induced by environmental fluctuations must persist when environmental 134 conditions return to ambient. In the current study, polyps pre-exposed to elevated temperature and low pH individually (but not simultaneously) had similar protein concentrations, rates of asexual reproduction and prey-capture regardless of whether they subsequently transferred to future or ambient conditions. Although data are limited, our observations are generally consistent with studies that demonstrate that phenotypic plastic responses persist when biota are subsequently returned to ambient (or control) conditions (e.g. Middlebrook et al., 2008, Hettinger et al., 2012, Putnam & Gates, 2015). For example, exposing larvae of the Olympia oyster (Ostrea lurida) to acidification reduced juvenile shell sizes and these changes persisted for >1.5 months after juveniles were subsequently transferred to ambient conditions (Hettinger et al., 2012). These observations thus demonstrated persistent carry-over effects from the larval phase. Taken together these observations highlight the need to examine the duration and magnitude of acclimation processes and that phenotypic plastic responses that occur during environmental fluctuations may ultimately determine the response of biota to future climate change conditions. ( Northern Australia is a ‘hot spot’ for dangerous cubozoan jellyfish but envenomations occur throughout the tropics worldwide (Gershwin et al., 2010). Our results suggest that, if other cubozoan jellyfish respond similarly, polyp populations are likely to persist but asexually reproduce at a slower rate in response to the dual stressors. To more accurately predict how Irukandji jellyfish, as a group, are likely to respond to future conditions we must now determine whether results of the current study are consistent with other species and other life history stages. To better determine whether asexual offspring of other non-calcifying cnidarians may benefit from parental pre-exposure in the face of climate change we must also identify potential non-genetic mechanisms and epi-genetic factors that may be passed to asexual offspring. Importantly, we highlight the need to investigate how pre-exposure to individual stressors may impart effects that 135 differ from those of pre-exposure to multiple stressors and demonstrate that biota may acclimate to future climate change conditions over short time scales. 136 REFERENCE LIST Albright R, Caldeira L, Hosfelt J et al. (2016) Reversal of ocean acidification enhances net coral reef calcification. Nature, 531, 362-365. Angilletta MJ (2009) Thermal adaptation: A Theoretical and Empirical Synthesis, Oxford University Press. Barshis DJ, Ladner JT, Oliver TA, Seneca FO, Traylor-Knowles N, Palumbi SR (2013) Genomic basis for coral resilience to climate change. 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Yoshimoto CM, Yanagihara AA (2002) Cnidarian (coelenterate) envenomations in Hawai'i improve following heat application. Transactions of the Royal Society of Tropical Medicine and Hygiene, 96, 300-303. 142 CHAPTER 6- GENERAL DISCUSSION 143 Synthesis of key findings Jellyfish blooms can proliferate rapidly, directly interfere with human health or enterprise and impart severe socio-economic effects (Richardson et al., 2009, Lucas et al., 2014). Despite concern that jellyfish populations are increasing globally in response to environmental change (Richardson et al., 2009, Lynam et al., 2011, Purcell, 2012), few studies have empirically examined the effects of environmental stressors on jellyfish. In this thesis, manipulative experiments were used to test hypotheses about the influence of environmental stressors on jellyfish polyps (Chapters 3, 4, 5) and medusae (Chapter 1). Importance of studying the interactive effects of co-occurring stressors Anthropogenic stressors rarely occur in isolation and have the potential to influence jellyfish populations. Relatively few studies have empirically examined the potential interactive effects of multiple stressors on jellyfish (e.g. Klein et al., 2014, AlgueróMuñiz et al., 2016). Chapter 2 assessed the interactive effects of reduced salinity and a PSII herbicide (atrazine) on the zooxanthellate jellyfish, Cassiopea sp. during a simulated rainfall event. Cassiopea sp. medusae exposed to high concentrations of atrazine and reduced salinity individually exhibited negative effects, but when exposed to reduced salinity and high concentrations of atrazine simultaneously medusae died. Medusae that survived the pulse event, however, recovered quickly. These results suggest that medusae can tolerate mild to moderate rainfall events but may not survive heavy rainfall events which typically expose biota to high levels of herbicide runoff and reduced salinity. These observations highlight the need to examine the potential interactive effects of co-occurring stressors under environmentally relevant scenarios and, if appropriate, examine how jellyfish may recover after episodic events as a means of assessing how jellyfish may respond to environmental stressors on a local and regional scale. 144 Chapter 4 compared the response of symbiotic and non-symbiotic jellyfish polyps of Cassiopea sp. to low pH and low DO conditions that typically occur during hypoxic events in coastal ecosystems. Exposure to hypoxia negatively affected symbiotic and non-symbiotic polyps. Acidification, however, negatively affected only non-symbiotic polyps. Although non-symbiotic polyps exposed to hypoxia and acidification in combination survived, the dual stressors exacerbated the negative effects relative to those exposed to the stressors individually. Symbiotic polyps exposed to both hypoxia and acidification, however, responded similarly to those exposed to ambient conditions, suggesting that the presence of symbionts mitigated the negative effects of the dual stressors. Consequently, symbiotic polyps may still thrive when hypoxia and acidification co-occur, however, non-symbiotic polyps may decline during hypoxic events. Importantly, the results obtained in Chapter 2 and Chapter 4 and do not support claims that jellyfish are robust to environmental stressors that occur on local and regional scales. Our understanding of how jellyfish may respond to global climate change is limited by single stressor studies that focus on the effects of elevated temperature. Indeed, some researchers hypothesise that ocean warming could enhance jellyfish populations because warming generally increases rates of growth and asexual reproduction of polyps (e.g. Widmer, 2005, Wilcox et al., 2007, Purcell et al., 2009). Chapter 3 investigated the potential interactive effects of ocean warming projections and future UV-B radiation scenarios (both increasing and decreasing) for the yr. 2100 on polyps of the zooxanthellate jellyfish Cassiopea sp. Under low UV-B conditions warming enhanced rates of asexual reproduction and did not affect the photochemical efficiency of symbionts relative to those under current conditions. However, warming reduced the asexual reproduction of polyps and photochemical efficiency of symbionts under current and high UV-B conditions. Indeed, if warming coincides with reduced UV-B 145 conditions then Cassiopea sp. polyps may continue to thrive, however, if warming coincides with elevated UV-B populations are unlikely to proliferate in the future. These results further support the observation that jellyfish are not immune to the effects of UV-B radiation (Salonen et al., 2012) and suggestions that jellyfish may benefit from climate change may be premature. Ocean acidification is also occurring concurrently with ocean warming on a global scale. Chapter 5 assessed the role of acclimation in potentially mitigating the effects of future ocean conditions on Irukandji jellyfish polyps of A. nr mordens. Short-term preexposure to elevated temperature and low pH individually mitigated the negative effects of future conditions on polyps. Pre-exposure to the dual stressors, however, did not mitigate the negative effects of future conditions. Although these results suggest that pre-exposure to warming and acidification individually could potentially facilitate the proliferation of polyps, ocean warming and acidification are unlikely to occur in isolation (IPCC, 2014). Collectively, the results obtained in Chapter 3 and Chapter 5 do not support claims that jellyfish polyps may thrive or benefit from climate change (Richardson et al., 2009, Lynam et al., 2011, Purcell, 2012) and highlight the complexity of responses of jellyfish to co-occurring climate change stressors. We, therefore, advocate that results of single-stressors studies, particularly those of the effects of elevated temperature, should be interpreted cautiously when predicting how jellyfish populations may respond to future ocean conditions. Coping with environmental stress: acclimation and mitigation With growing awareness that climate change may affect jellyfish populations, many manipulative experiments have exposed jellyfish to levels of climate change stressors projected for the end-of-century to assess how jellyfish may respond in the future (e.g. Klein et al., 2014, Lesniowski et al., 2015). Chapter 3, which tested the immediate 146 effects of warming and UV-B after a 4-day acclimation period, reported that Cassiopea sp. polyps did not appear to acclimate to elevated UV-B and warming conditions over 37 days. It is possible, however, that jellyfish may become more robust over time. Preexposure to elevated temperature and low pH, individually but not simultaneously, may help jellyfish polyps of A. nr. mordens to cope under future conditions (Chapter 5). To more accurately determine how jellyfish populations may respond to environmental stressors that occur over long time frames (e.g. climate change stressors) researchers should consider the potential for jellyfish to acclimate when conducting manipulative experiments. Symbiotic jellyfish may have an ecological advantage over non-symbiotic jellyfish under environmental stress. Symbiodinium appear to be important in mitigating the negative effects of hypoxia and acidification on jellyfish and thus, symbiotic jellyfish may proliferate over non-symbiotic jellyfish during hypoxic events (Chapter 4). Symbiotic jellyfish, however, may not be robust to other co-occurring stressors such as reduced salinity and herbicides (Chapter 2) that coincidentally, also occur when runoff from heavily impacted coastlines enters coastal waters (Islam & Tanaka, 2004). Nonsymbiotic jellyfish may, therefore, be more robust when exposed to environmental stressors that directly affect photosynthesis of their symbionts. Chapter 2, however, did not examine the potential negative effects of reduced salinity and PSII herbicides on non-symbiotic jellyfish. Indeed, herbicides (Kawano et al., 2005) and other chemical pollutants (Sánchez-Bayo, 2012, Stanley & Preetha, 2016) may affect non-target organisms that are non-photosynthetic. To more accurately predict how jellyfish, as a group, may respond to changing ocean conditions we must consider the role of symbionts in potentially mitigating (or exacerbating) the negative effects of environmental stressors on jellyfish and consider how symbiotic and non-symbiotic jellyfish may respond differently to co-occurring environmental stressors. 147 Future directions for research Our understanding of how jellyfish populations may respond to environmental stressors is hindered by manipulative experiments that do not accurately mimic conditions that jellyfish are exposed to in the natural environment. The experiments conducted in Chapters 2, 3, 4 and 5 aimed to accurately mimic conditions that biota experience in the natural environment by incorporating environmentally relevant levels of cooccurring stressors and, where appropriate, exposing biota to diel changes. Most studies that investigate the effects of environmental stressors on jellyfish expose biota to constant levels of stressors (e.g. Shoji et al., 2005b, Algueró-Muñiz et al., 2016). In the natural environment, however, biota are often exposed to diel fluctuations of environmental stressors (such as DO, pH and UV-B irradiance). As an example, most studies of the effects of UV-B radiation on marine species investigate the effects of constant levels UV-B irradiance (e.g. Lesser, 1996, Fischer & Phillips, 2014). In the natural environment, however, UV-B fluctuates throughout the day (Helmuth et al., 2002). It is still not clear, however, whether experiments that expose jellyfish to constant levels of stressors yield different results to those that expose jellyfish to diel fluctuations of stressors. Although studies that investigate the effects of diel variation of stressors on jellyfish are limited, studies conducted on other marine organisms demonstrate that diel fluctuations can impart effects that differ from those when biota are exposed to constant levels of stressors (e.g. Frieder et al., 2014, Clark, 2015). For example, juvenile bivalves exposed to diel fluctuations of low DO and low pH had higher rates of mortality than those exposed to constant levels of the stressors (Clark, 2015). Accurately predicting how jellyfish populations respond to environmental stressors in the natural environment, therefore, requires investigation into whether different methods used to manipulate levels of environmental stressors (i.e. constant vs. variable) may change the response of jellyfish in manipulative experiments. 148 Marine organisms may acclimate to environmental stress within (e.g. Brown et al., 2002, Bellantuono et al., 2011) and across sexual generations (e.g. Donelson et al., 2012, Miller et al., 2012). Although pre-exposure to warming and acidification in combination did not allow polyps of A. nr mordens to acclimate to future ocean conditions (Chapter 5), it is possible that trans-generational acclimation could be important in persistence of jellyfish populations in the face of climate change. Although the role of trans-generational acclimation has not yet been investigated in jellyfish (probably because of the difficulty involved in culturing multiple generations), several studies of other marine organisms have demonstrated that parental pre-exposure to climate change stressors can help offspring acclimate to future conditions (e.g. Munday, 2014, Putnam & Gates, 2015). For example, preconditioning of adult reef-building coral P. damicornis to warming and acidification conditions improved the metabolic acclimation of their brooded larvae when exposed to future conditions (Putnam & Gates, 2015). To more accurately determine how jellyfish may respond to changing ocean conditions we must now investigate the potential for jellyfish to acclimate to other environmental stressors and determine whether trans-generational acclimation could facilitate jellyfish populations. Research chapters within this thesis examined the influence of environmental stressors on individual jellyfish species. There is now ample evidence, however, that environmental stressors impact ecological interactions between marine species (Walther et al., 2002, Rosenblatt & Schmitz, 2014). The degree to which manipulative experiments, such as those undertaken here, accurately predict how jellyfish may respond under environmental stress may, therefore, depend on ecological interactions between jellyfish and other biota. As an example, hypoxia is hypothesised to facilitate the proliferation of jellyfish populations (Purcell et al., 2007) because jellyfish can be more tolerant of hypoxia (<2.0mgO2L-1) than other metazoans such as fish (<4.0mgO2L1 ) (Shoji et al., 2005a). Few manipulative experiments, however, have examined the 149 effects of hypoxia on jellyfish and possible interactions with other organisms (but see, Decker et al., 2004, Shoji et al., 2005b). Only by understanding the effects of environmental stressors on ecological interactions between jellyfish and other biota, is it possible to obtain a realistic understanding of how jellyfish populations will respond to environmental change. Most studies of the effects of environmental stressors on jellyfish have focused on species of the genera Aurelia and Mnemiopsis (Pitt et al., in review), both of which are considered as common and sometimes problematic (Dong et al., 2010, Thein et al., 2012). Common jellyfish species may be particularly robust to environmental stressors and share behavioural and physiological traits that allow them to persist. For example, elevated pCO2 conditions (800ppm) did not affect the growth of polyps of two common scyphozoan species, Cyanea capillata and Chrysaora hysoscella (Lesniowski et al., 2015). Other less common species, however, may not share these traits and respond differently under environmental stress. For example, Irukandji jellyfish polyps of Alatina nr mordens exposed to elevated pCO2 conditions (pH 7.6) exhibited lower rates of asexual reproduction than those exposed to ambient pCO2 conditions (pH 7.9) (Klein et al., 2014). These observations highlight that we need to consider that although some species of jellyfish may be robust to environmental stressors, others may respond negatively and robust evidence for the role of environmental stressors in the facilitation of all jellyfish populations is limited. Conclusions This thesis examined the response of jellyfish to the interactive effects of co-occurring stressors that occur on local, regional and global scales, investigated the role of symbionts in potentially mitigating the negative effects of stressors on jellyfish and tested ability of jellyfish to acclimate to climate change. Importantly, the results 150 obtained in this thesis do not support claims that jellyfish benefit from environmental stress. Although warming ocean temperatures are hypothesised to facilitate jellyfish populations in the future, other stressors that co-occur on global and local scales have the potential to interact and potentially mitigate the positive effects of warming on jellyfish. Symbionts may be important in the proliferation of jellyfish populations and these findings highlight that symbiotic and non-symbiotic jellyfish may respond differently under changing ocean conditions. Pre-exposure to climate change stressors individually may allow jellyfish to acclimate over short time-scales, however, jellyfish are unlikely to acclimate in response to dual climate change stressors. 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Widmer CL (2005) Effects of temperature on growth of north-east Pacific moon jellyfish ephyrae, Aurelia labiata (Cnidaria: Scyphozoa). Journal of the Marine Biological Association of the United Kingdom, 85, 569-573 Wilcox ST, Moltschaniwskyj NA, Crawford CM (2007) Asexual reproduction in scyphistomae of Aurelia sp.: Effects of temperature and salinity in an experimental study. Journal of Experimental Marine Biology and Ecology, 353, 107-114. 155 APPENDIX 156 APPENDIX (CHAPTER 3) Fig. S1 Field measurements of UV-B radiation (Wm-2) and temperature (ºC) recorded on the 9th January, 2015 at Saltwater Creek, southeast Queensland (SEQ), Australia (27.90ºS, 153.37ºE). 157 APPENDIX (CHAPTER 4) Figure A4.1 Mean (±1SE) pH and DO measurements taken in (a) ambient treatments (b) low pH and DO treatments taken at hourly intervals throughout the day. Figure A4.1 Mean (±1SE) pH and DO measurements taken in (a) ambient treatments (b) low pH and DO treatments taken at hourly intervals throughout the day. 158 Table A4.1 Full factorial results of a LMMs analysis comparing day and night pH microelectrode measurements between treatments at Day 22 of the experiment. The model-of-best-fit was AR(1), BIC (Bayesian Information Criterion) = -1045.115, AIC (Akaike’s Information Criterion) = -1056.104. Df= Degrees of freedom. P values in bold are statistically significant (P < 0.05). Source Day/ Night Symbiont Oxygen pH Day/ Night × Symbiont Day/ Night × Oxygen Day/ Night × pH Symbiont × Oxygen Symbiont × pH Oxygen × pH Day/ Night × Symbiont × Oxygen Day/ Night × Symbiont × pH Day/ Night × Oxygen × pH Symbiont × Oxygen × PH Day/ Night × Symbiont × Oxygen × pH Distance Day/ Night × Distance Symbiont × Distance Oxygen × Distance pH × Distance Day/ Night × Symbiont × Distance Day/ Night × Oxygen × Distance Day/ Night × pH × Distance Symbiont × Oxygen × Distance Symbiont × pH × Distance Oxygen × pH × Distance Day/ Night × Symbiont × Oxygen × Distance Day/ Night × Symbiont × pH × Distance Day/ Night × Oxygen × pH × Distance Symbiont × Oxygen × pH × Distance Day/ Night × Symbiont × Oxygen × pH × Distance Numerator df 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 5 5 5 5 5 5 5 5 5 5 5 5 Denominator df 47.916 47.916 47.916 47.916 47.916 47.916 47.916 47.916 47.916 47.916 47.916 47.916 47.916 47.916 47.916 145.035 145.035 145.035 145.035 145.035 145.035 145.035 145.035 145.035 145.035 145.035 145.035 F Sig. 192.545 74.747 0.394 2366.626 61.419 1.349 4.812 0.510 10.856 1.013 0.013 6.528 0.668 0.054 0.124 70.592 29.885 53.912 1.079 17.608 49.310 0.662 19.436 0.926 8.137 1.602 0.291 <0.001 <0.001 0.533 <0.001 <0.001 0.251 0.033 0.479 0.002 0.319 0.911 0.014 0.418 0.817 0.726 <0.001 <0.001 <0.001 0.374 <0.001 <0.001 0.653 <0.001 0.466 <0.001 0.163 0.917 5 5 5 5 145.035 145.035 145.035 145.035 6.370 1.314 0.974 0.310 <0.001 0.261 0.436 0.906 159 Table A4.2 Internal transcribed spacer 2 (ITS2) sequences used to genotype Symbiodinium cells in Cassiopea sp. polyps in this study. Note: only the sequences retrieved by this study with 100% query coverage to previously described Symbiodinium genotypes have been deposited in NCBI genbank. pH treatment DO treatment Sequence length (bp) Accession (Genbank) Symbiodinium Sub-type Low pH Control 291 KX533944 C1 Low pH Control 291 KX533945 C1 Low pH Control 291 KX533946 C1 Low pH Control 301 KX533947 C1 Control Low DO 302 KX533948 C1 Control Low DO 291 KX533949 C1 Control Low DO 291 KX533950 C1 Control Low DO 302 KX533951 C1 Low pH Low DO 291 KX533952 C1 Low pH Low DO 291 KX533953 C1 Low pH Low DO 291 KX533954 C1 160 APPENDIX (CHAPTER 5) Figure A5.1 Mean (±1SE) pH taken in (a) ambient pH treatments (b) low pH treatments taken at hourly intervals throughout the day. 161
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