Mar. Biotechnol. 3, 407–415, 2001 DOI: 10.1007/s1012601-0060-Z © 2001 Springer-Verlag New York Inc. Invasion Without a Bottleneck: Microsatellite Variation in Natural and Invasive Populations of the Brown Mussel Perna perna (L) Brenden S. Holland* Kewalo Marine Laboratory, Pacific Biomedical Research Center, University of Hawaii, 41 Ahui Street, Honolulu, HI 96813 U.S.A. Abstract: Population-level genetic diversity of the brown mussel Perna perna was investigated using nuclear microsatellite markers in 6 natural and 6 invasive populations. A total of 448 individuals from 12 populations spanning the natural and introduced ranges of the brown mussel were scored for 2 polymorphic microsatellite loci. Wright’s hierarchical F statistics (FST), Hardy-Weinberg equilibrium, Nei’s genetic distance, and other descriptive statistics were used to quantify geographic population subdivision, and to estimate the number of migrants per generation. FST values (0.007–0.042) revealed that genetic partitioning among populations was low. Microsatellite data revealed a slight difference in observed heterozygosity and no statistically significant differences in expected heterozygosity or allelic diversity between natural and introduced populations. Effective numbers of migrants (Nem) per generation ranged from 6 to 35 individuals. The potential significance of an invasive species with high genetic variation in terms of the risk of establishment and conservation implications is discussed. Key words: Perna perna, population structure, invasive species, DNA markers, microsatellites, F statistics. I NTRODUCTION An issue fundamental to the growing field of bioinvasion science is the role of genetic variation in predisposing introduced species to successful establishment. Results of allozyme-based genetic studies of invasive mollusk populations are mixed, some have demonstrated unexpectedly low levels of variation due to founder effects (Smith et al., 1979; McLeod, 1986; Knight et al., 1987; Johnson, 1988), while others have shown relatively high genetic diversity (WooReceived October 15, 2000; accepted December 29, 2000 *Corresponding author: telephone 808-539-7318; fax 808-599-4817; e-mail: [email protected] druff et al., 1985, 1986; Hebert et al., 1989; Duda, 1994). However, with a few recent exceptions (Bagley and Geller, 1999), studies using molecular techniques to characterize genetic variation in invasive marine populations during or immediately following introduction are lacking. Characterization of genetic structure of invasive populations is important for management as well as scientific reasons. If genetically variable populations tend to be more successful as invaders than those that are relatively genetically homogeneous (e.g., Ehrlich, 1986), then genetic data may provide an important tool to resource managers concerned with invasion risk assessment and prediction. Genetic data may augment management strategy by providing 408 Brenden S. Holland Figure 1. Sampling locales and mean genetic diversity for invasive brown mussel populations from the Gulf of Mexico. Numbers following each population code are average number of alleles for both loci/average direct count heterozygosity (Hdc) for both loci. Sample codes correspond to the figure as follows: (1) PAJ, Port Aransas Jetty; (2) FPJ, Fish Pass Jetty; (3) MPJ, Mansfield Pass Jetty; (4) BSP, Brazos Santiago Pass; (5) TPN, Tuxpan; (6) TLA, Tecolutla guidance for focusing control and eradication efforts on invasive taxa with the highest probability of establishment (Holland, 2000). Currently molecular methods are proving helpful in identification of invading taxa (Apte et al., 2000). Recently developed molecular techniques such as multilocus genotyping may eventually be used to pinpoint geographic sources of invasive taxa (Rannala and Mountain, 1997; Davies et al., 1999). Scientifically, studies of invasion genetics may eventually contribute to a better understanding of evolutionary processes and impacts associated with founder effects, genetic drift, gene flow, extinction, inbreeding, and speciation. Detailed knowledge of the genetic structure of invading populations is essential to developing an understanding of the evolutionary significance of invasive events. The brown mussel, Perna perna is considered endemic to the central and southwestern Atlantic, the southeastern Atlantic, and the southwestern Indian Oceans (Sidall, 1980). A single colony of P. perna was discovered on a man-made jetty at the mouth of Corpus Christi Bay, Texas, in early 1990 (Figure 1) (Hicks and Tunnell, 1993). The taxonomic identity was verified via cytotaxonomic techniques (Holland et al., 1999). The brown mussel had become established in the northwestern Gulf of Mexico by 1992, and continued to spread southwards into the Mexican states of Tampico and Veracruz over the next few years by advection of veliger larvae via prevailing surface currents (Hicks and Tunnell, 1995; Holland, 1997). The objectives of this study were threefold: (1) to test for genetic variation within and between invasive and natu- Microsatellite Variation in Brown Mussel 409 Figure 2. Sampling locales from the natural range of Perna perna. Sample codes correspond to the figure as follows: (1) CVN, Cumana, Venezuela; (2) PDC, Praya de Cibratel, Brazil; (3) RGB, Rio Grande, Brazil; (4) CSA, Capetown, South Africa; (5) KOS, Kenton on Sea, Transkei; (6) DCT, Diaz Cross, Transkei. Measures of genetic variation include average number of alleles over both loci/average direct count heterozygosity (Hdc) for both loci: (1) 31/0.93; (2) 33/0.90; (3) 20.5/0.90; (4) 19/0.88; (5) 24/0.85; (6) 25.5/0.92. Table 1. Perna perna Specific Microsatellite Oligonucleotide PCR Primer Sequences Oligonucleotide primer name and sequence Perna microsatellite primer 1: PMS-1f 5⬘-TCA TCT GTT GTT PMS-1r 5⬘-GAC AAG AAG TTG Perna microsatellite primer 2: PMS-2f 5⬘-CGT CTC CAT CTT PMS-2r 5⬘-GCG CAC TGT CAA GTC TTT TTG-3⬘ ACT AGA ATA ATG-3⬘ AF236062 TAA TTA CTA-3⬘ TGT T-3⬘ AF236063 ral populations; (2) to test for the presence and extent of a founder effect in invasive populations; (3) to describe and compare genetic population structure of P. perna from its natural range and from its recently expanded range in the Gulf of Mexico. M ATERIALS AND GenBank accession number of cloned microsatellite containing insert: M ETHODS Sample Collection and DNA Extraction Mussels were collected between December 1994 and June 1996, from 6 introduced populations in the western Gulf of Mexico, including Texas and Mexican gulf coast locales (Figure 1), and 6 natural populations spanning a broad range of the natural distribution (Figure 2). Samples were preserved in 80% ethanol, and genomic DNAs were extracted from gill tissue via standard phenol–chloroform– isoamyl alcohol methods (Hillis et al., 1996). Isolation of Microsatellites A small insert (200–700 bp) partial genomic library was constructed by ligating cohesive ends of Sau3A-digested mussel DNA fragments into BamHI-linearized pUC18 vector (Invitrogen, Carlsbad, Calif.) and cloned in Escherichia coli DH5␣ cells (Pharmacia). Recombinant bacterial colonies were identified by standard IPTG X-Gal blue/white screening, then transferred to nylon membranes, where recombinant colonies were denatured, fixed, and screened via hybridization to ␥-32P-labeled (GT)12 dinucleotide probes. Microsatellite-bearing inserts were sequenced and polymerase chain reaction (PCR) primers were designed to regions flanking the target sequence (Ferraris and Palumbi, 1996; Hillis et al., 1996; Strassman et al., 1996). PCR Conditions Radioactively labeled primers were used in 30-µl PCR reactions with an oil overlay and standard conditions. Pernaspecific microsatellite primer sequences are presented in Table 1. PCR conditions were optimized, and 32P-labeled fragments were separated by 6% denaturing polyacrylamide gel electrophoresis. PCR profiles were run as follows: PMS-1 94°C, 30 seconds; 48°C, 30 seconds; 72°C, 30 seconds. PMS-2 94°C, 30 seconds; 44°C, 30 seconds; 72°C, 30 410 Brenden S. Holland Table 2. Direct Count Heterozygosity Values for Introduced Brown Mussel Populations from the Gulf of Mexico* Introduced populations Observed heterozygote frequencies (SD)† PAJ (0.026) 14 FPJ (0.024) 39 MPJ (0.020) 59 BSP (0.012) 32 TPN (0.035) 29 TLA (0.024) 49 Mean Values 0.929 (0.082) 14 0.923 (0.0094) 39 0.915 (0.016) 60 0.844 (0.015) 32 0.690 (0.0094) 26 0.816 (0.013) 49 Hi1 = 0.853 (0.024) Locus PMS1 Table 3. Direct Count Heterozygosity Values for Natural Populations* Observed heterozygote frequencies (SD)† Locus PMS2 0.571 0.769 0.783 0.781 0.769 0.776 Hi2 = 0.741 (0.024) *Population acronyms are as follows: MPJ, Mansfield Pass Jetty; BSP, Brazos Santiago Pass; Mexican Gulf localities are TPN, Tuxpan; TLA, Tecolutla. †Population sample sizes are shown below standard deviations. seconds. Polyacrylamide gels were vacuum dried and placed on autoradiographic film at −80°C overnight. F statistics and genetic distances were calculated using Microsat C (Minch, 1995). R ESULTS Unprecedented levels of genetic variation were revealed in the present study. Although 6 microsatellites were isolated, the 2 markers used in this study required an unexpected amount of time and effort to characterize. Heterozygosity values of polymorphic loci from introduced versus natural populations of P. perna are shown in Tables 2 and 3. Levels of heterozygosity are shown for each population sampled as well as the mean value and SD for all introduced and all natural populations for each locus, as well as over all popu- Natural populations PMS1 PMS2 CVN (0.044) 47 RGB (0.015) 26 PDC (0.024) 46 CSA (0.025) 17 KOS (0.010) 28 DCT (0.019) 30 Mean values 0.979 (0.014) 41 0.847 (0.021) 22 0.860 (0.009) 46 0.824 (0.010) 15 0.903 (0.048) 29 0.867 (0.025) 29 Hn1 = 0.880 (0.023) HO = 0.875 (0.024) 0.878 Overall means for all populations (natural and introduced) 0.957 0.930 0.933 0.80 0.966 Hn2 = 0.911 (0.021) HO = 0.829 (0.023) *Locality acronyms from within the natural range are CVN, Cumana Venezuela; RGB, Rio Grande Brazil; PDC, Praya Del Cibratel Brazil; CSA, Capetwon, South Aftrica; KOS, Kenton on Sea, Transkei; DCT, Diaz Cross, Transkei. †Population sample sizes are shown below standard deviations. lations. The remainder of the microsatellite data are summarized in Tables 4 through 8. Number of alleles per locus is shown in Tables 4 and 5 for introduced versus natural populations. Unbiased heterozygosities were computed and Hardy-Weinberg equilibrium (HWE) was tested using TFPGA software (Miller, 1997). Nine of the 12 populations were found to conform to the HWE model for each locus. Values for numbers of alleles revealed high allelic diversity both in introduced and in natural populations. Tables 6 and 7 summarize the results in a locus-specific manner, and include number of samples scored, heterozygosity per population, and fixation index relative to the Port Aransas population. Table 8 shows the Microsat C (Minch, 1995) data summary for both loci and all populations. Microsatellite Variation in Brown Mussel 411 Table 4. Number of Alleles per Locus from Introduced Populations* Table 5. Number of Alleles per Locus from Natural Populations* Number of alleles (SD)† Number of alleles per locus (SD)† Natural populations PMS1 Introduced populations Locus PMS1 CVN PAJ 15 (s = 2.61) 14 21 (0.076) 39 25 (1.86) 59 21 (0.52) 32 21 (0.076) 29 22 (0.52) 49 Ni1 = 20.83 (0.94) 30 (3.50) 47 20 (0.97) 26 26 (1.71) 46 14 (3.65) 17 24 (0.82) 28 19 (1.42) 30 Nn1 = 22.17 (s = 2.01) NO1 = 21.5 (s = 1.48) 14 FPJ MPJ BSP TPN TLA Mean values Locus PMS2 15 (s = 5.59) RGB 32 (2.01) 39 39 (5.14) 59 27 (0.22) 32 22 (2.46) 26 30 (1.12) 49 Ni2 = 27.5 (2.76) *For population designation codes see footnote to Table 2. †Sample sizes are shown below standard deviations. Table 6 shows FST and Nei’s genetic distance values produced via Microsat C (Minch, 1995). FST values were found to be low, and ranged from 0.004 to 0.05 for locus PMS1, from 0.005 to 0.07 for locus PMS2, and from 0.007 to 0.042 for both loci combined. Individual as well as overall FST values corresponded to high rates of gene flow among populations. Number of migrants between populations per generation was estimated as follows: Nm = 1 − FST/4 FST (Waples, 1998). The range of migrants per generation was estimated to be between 6 and 35 individuals exchanged per generation. This formula provides a rough approximation and should be used only as a general guideline, particularly when FST is small (Whitlock and McCauley, 1999). These values indicated high gene flow and a lack of population genetic divergence due to population subdivision. Table 7 summarizes genetic diversity data for all populations grouped by source, as either natural or introduced. An unweighted pair-group method with arithmetic mean (UPGMA) tree was constructed using TFPGA (Figure 4). PDC CSA KOS DCT Mean values Mean over all populations PMS2 32 (1.42) 41 21 (3.5) 22 40 (5.00) 46 24 (2.16) 15 24 (2.16) 29 32 (1.42) 29 Nn2 = 28.83 (s = 2.61) NO2 = 28.17 (s = 2.69) *For population designation codes see footnote to Table 3. †Sample sizes are shown below standard deviaitons. Unfortunately, the allelic variation was so high that the source population could not be resolved for the sample sizes used in this study. D ISCUSSION Population genetic theory predicts that bottlenecks can be detected by rapid and often drastic decreases in allele frequency (Cornuet and Luikhart, 1996; Hedrick, 2000). Heterozygosity may not be lost at as rapid a rate as allelic diversity, but if the bottleneck persists over multiple generations, then drift begins to drive allele frequencies toward fixation (Hartl and Clark, 1997). P. perna populations in the Gulf of Mexico were characterized by (1) high genetic variation within populations, (2) negligible population subdivision, and (3) lack of heterozygote deficiencies predicted for bioinvasions and commonly encountered in mussel populations. Mean genetic diversity values for brown mussels are at the upper extreme for mollusks (Reichow and Smith, 412 Brenden S. Holland Table 6. Among-population Pairwise Fixation Indices (FST) for Both Loci PMS-1 and PMS-2 (above the diagonal), and Nei’s Genetic Distance Values Averaged for Each Population (12 populations) for Both Loci PMS-1 and PMS-2 (below the diagonal)* PAJ FPJ MPJ BSP TPN TLA CVN RGB PDC CSA KOS DCT PAJ FPJ MPJ BSP TPN TLA CVN RGB PDC CSA KOS DCT — 0.252 0.301 0.218 0.375 0.442 0.384 0.338 0.301 0.330 0.297 0.434 0.025 — 0.056 0.149 0.127 0.099 0.255 0.093 0.229 0.177 0.320 0.238 0.028 0.007 — 0.105 0.233 0.145 0.336 0.270 0.134 0.218 0.435 0.101 0.024 0.013 0.010 — 0.180 0.199 0.649 0.273 0.078 0.156 0.388 0.166 0.035 0.013 0.019 0.017 — 0.210 0.426 0.220 0.165 0.201 0.295 0.310 0.037 0.010 0.012 0.017 0.018 — 0.304 0.109 0.172 0.108 0.442 0.306 0.031 0.019 0.028 0.036 0.022 0.026 — 0.202 0.352 0.597 0.329 0.391 0.033 0.011 0.022 0.024 0.021 0.012 0.022 — 0.168 0.220 0.098 0.323 0.028 0.017 0.011 0.008 0.015 0.014 0.020 0.016 — 0.102 0.240 0.164 0.042 0.018 0.019 0.016 0.021 0.013 0.033 0.027 0.011 — 0.310 0.191 0.028 0.023 0.028 0.027 0.023 0.030 0.032 0.010 0.017 0.032 — 0.295 0.036 0.018 0.009 0.014 0.024 0.023 0.038 0.026 0.013 0.019 0.021 — *Data were generated using Microsat C (Minch, 1995). Table 7. Comparison of Microsatellite Data from Introduced and Natural Populations of Perna perna in Terms of Allelic Diversity, Observed and Expected Heterozygosity, and Mean FST Value* Population Introduced (6 populations) Natural (6 populations) Heterozygote frequency (averaged for all populations, both loci) Allelic diversity (averaged for all populations, both loci) HE 0.949 HO 0.798 26.67 24.17 0.019 HE 0.945 HO 0.897 25.5 24.84 0.022 Mean FST value *Genetic diversity of natural compared with introduced populations showed a slight reduction in observed heterozygosity (HO), with no significant difference in ec expected heterozygosity (HE), number of alleles per locus, or mean FST. 1999) (Table 4). Perna perna populations sampled from the natural range are also characterized by (1) high genetic variation within populations, (2) negligible geographic subdivision among populations, and (3) lack of heterozygote deficiencies commonly encountered in bivalve mollusks (e.g., Zouros and Foltz, 1984). The high levels of genetic diversity shown by P. perna in the Gulf of Mexico result from the introduction of a genetically diverse assortment of larvae. Several possible explanations include more than one introduction event, with larvae originating from numerous source populations; a single introduction of larvae picked up at several genetically distinct source populations; and a single introduction of a large number of larvae from a genetically diverse source population. These hypotheses were tested by comparing the genetic composition and population structure of introduced versus natural populations. The result of this comparison revealed a lack of genetic structure in natural and nonindigenous P. perna populations, as evidenced by the low FST values. These values indicated little or no inbreeding due to subdivision of populations and reflected regular exchange of alleles among populations, with little or no population-level differentiation detectable. This lack of population subdivision was likely brought about by extremely high levels of gene flow. If the founding population had originated from multiple source populations, a Wahlund effect would be expected, characterized by higher heterozygosity in introduced populations than in each natural population (Ayala, 1982; Hartl and Clark, 1997; Hedrick, 2000). This was not observed. The pattern of genetic variability observed provided support for the hypothesis that the genetic structure of source populations of P. perna is reflected in the structure of introduced populations. The high levels of allelic diversity and heterozygosity exhibited in invasive populations were characteristic of the source population, and would not have Microsatellite Variation in Brown Mussel 413 Table 8. Exact Tests, 2 Tests, and Calculation of Expected Heterozygosities (Miller, 1997)* Population Introduced PAJ FPJ MPJ BSP TPN TLA Natural CVN PDC RGB CSA DCT KOS Expected heterozygote frequency (unbiased heterozygosity averaged for both loci) HWE locus 1 exact test HWE locus 2 exact test HWE locus 1 2 0.9431 0.9559 0.9471 0.9521 0.9487 0.9490 + + + + − + + + − + + − + + + + − + + + − + + − 0.9497 0.9378 0.9618 0.9388 0.9370 0.9468 + − + + + + − + + + + + + − + + + + − + + + + + HWE locus 2 2 *Results of exact tests and 2 were identical, i.e., the 2 tests identified the same loci or populations in violation of Hardy-Weinberg equilibrium. The plus symbol is used to indicate conformation with the HWE model, while the minus symbol indications violation of the model. One introduced population was not at HWE for locus 1, and 2 introduced populations violated HWE at locus 2. For natural populations, one population violated HWE at locus 1, and one population violated HWE at locus 2. In summary, 38 of 48 tests conformed to HWE. been detected in the case of a severe bottleneck event. Although a slight decrease in observed heterozygosity was seen in introduced populations, no significant differences in allelic diversity were found. Since only minor differences were detected in population structure (FST) and in genetic variation of natural versus introduced populations, we can conclude that the effective population size of introduced mussel larvae was large, likely consisting of many thousands of successful recruits. Although only a single colony of P. perna was discovered in 1990 (Hicks and Tunnell, 1993), genetic evidence indicated that many thousands of undetected mussels were present in the Gulf at that time. Perna perna had been in the Gulf for between 4 and 6 years when tissue samples were collected. A conservative estimate is that brown mussels in the Gulf may spawn 3 times per year (D. Hicks, University of Texas, personal communication). Therefore, P. perna had been in the Gulf for at least 12 to 18 generations. Theoretical models of the effects of genetic drift on allele frequency have shown that allele fixation and loss are observed as founding populations grow (e.g., Hartl and Clark, 1997). The exact number of generations required for the effects of drift to become apparent depends on the effective population size and genetic composition of the founders. The fact that introduced populations of P. perna have not exhibited significant impacts due to genetic drift to date, coupled with the high heterozygosity shown by invasive populations, eliminates the possibility that genetic drift simply has not yet been observed. The lack of evidence of a severe population bottleneck provides, in a sense, additional cause for concern in the face of the increasing incidence of global ballast water introductions. Data presented in this investigation provide the first evidence of the ability of a single ballast water introduction to capture and translocate a gene pool virtually in its natural state, a phenomenon that might be termed a “gene pool capture” event. As the bottleneck model illustrates, founder events result in genetically limited and therefore usually suboptimal assortments of genotypes. On the one hand, when faced with heterogeneous foreign habitats and “unfamiliar” ecological conditions, a genetically homogeneous founder population has a limited gene pool from which to reproductively “draw” successful allelic combinations. On the other hand, the fitness of a highly variable assortment of genotypes is predicted to be adaptively and evolutionarily superior under a heterogeneous, or changing set of selective 414 Brenden S. Holland Figure 3. Representative 32P-labeled microsatellite PCR amplification products from P. perna are shown. Following separation via denaturing 6% polyacrylamide gel electrophoresis, microsatellites were visualized via exposure to autoradiographic film. Both dinucleotide microsatellite markers were highly polymorphic for all 12 populations surveyed. Individuals shown were from a single population, amplified using primer set PMS-1. conditions. The result is a theoretical increase in the probability of successful establishment of introduced taxa with high genetic diversity. Although the delivery mechanism of P. perna in the Gulf of Mexico is unknown, it is most likely due to ballast water discharge (Holland, 1997; Hicks and Tunnell, 1995). Ballast water transport provides a potential mechanism for introduction of hundreds of millions of planktonic individuals in a single discharge event, owing to the massive volumes of ballast water routinely conveyed by commercial bulk carriers (Schormann et al., 1990) and the rapid transit times typical of modern commercial shipping practices. This study reveals yet another insidious and devastating potential effect of the ballast water delivery mechanism— that is, its ability to transport larvae in sufficient numbers to avoid bottleneck effects and reduction of genetic diversity. The brown mussel has maintained high levels of genetic variation in introduced populations, reflecting panmixia within populations, high gene flow among populations, and possibly balancing selection in natural populations. This emphasizes the serious nature of the global environmental threat posed by ballast water introductions. Several authors have suggested that high genetic variability is an important Figure 4. UPGMA tree showing relationships among 12 Perna perna populations based on Nei’s genetic distance (1978) generated via TFPGA (Miller, 1997). Populations 1–6 were introduced to the Gulf of Mexico, 7–12 are from the natural range of this species. OTU’s are as follows: (1) PAJ, Port Aransas Jetty, Texas; (2) FPJ, Fish Pass Jetty, Texas; (3) MPJ, Mansfield Pass Jetty, Texas; (4) BSP, Brazos Santiago Pass, Texas; (5) TPN, Tuxpan, Mexico; (6) TLA, Tecolutla, Mexico; (7) CVN, Cumana Venezuela; (8) PDC, Praya de Cibratel, Brazil; (9) RGB, Rio Grande, Brazil; (10) CSA, Capetown, South Africa; (11) KOS, Kenton on Sea, Transkei; (12) DCT, Diaz Cross, Transkei. characteristic of successful invasive populations (e.g., Ehrlich, 1986). The levels of genetic variation in P. perna from the Gulf of Mexico observed in this study and the corresponding success of establishment by the brown mussel support this theory. The high genetic diversity found in introduced P. perna populations also underscores the serious nature of the threat to natural marine communities posed by the transport and discharge of nonindigenous marine taxa by commercial shipping. The application of molecular techniques to biological invasions may prove a crucial tool in the efforts to better understand, predict, and ultimately prevent future introduction events. A CKNOWLEDGMENTS This study was supported by the Texas A&M University Research Foundation, and was conducted in partial fulfillment of the requirements for a Doctor of Philosophy degree in the Department of Oceanography at Texas A&M University. I thank S.R. Gittings, S. Davis, E. Arrevalo, and D. Gallagher, and my committee for guidance during this Microsatellite Variation in Brown Mussel 415 study. I also thank M. Jackson for field assistance in Texas, Y. Barrios for field assistance in Mexico, and J. Lindsay and D.W. 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