Genotypic control of centromere positions of parental genomes in Hordeum x Secale hybrid metaphases TRUDE SCHWARZACHER-ROBINSON, R. A. FINCH, J. B. SMITH and M. D. BENNETT Plant Breeding Institute, Trumpington, Cambridge CB2 2LQ, England Summary The spatial disposition at metaphase of centromeres from Hordeum and Secale in root tip cells of H. chilense X S. africanum is described and compared with corresponding results for H. vulgare X S. africanum obtained previously. In both of these Fj sexual hybrids (2n = 2x = 14) each of the seven chromosome types from Secale was easily distinguished by its large size from any of the seven from Hordeum. In H. chilense X S. africanum, centromeres of Secale chromosomes tended to be nearer the centre of the metaphase plate than did centromeres of Hordeum chromosomes in both squash preparations seen by light microscopy and unsquashed cells examined using electron microscope three-dimensional serial thin section reconstructions. This difference was significant in some individual cells, and highly significant for pooled data for reconstructed cells and separately for squashed metaphases. In no cell were Hordeum centromeres on average significantly nearer the centre of the metaphase plate than Secale centromeres. These results agreed with those previously obtained for H. vulgare X S. africanum in that: (1) centromeres of the two parental haploid sets tended to be spatially separate; and (2) centromeres from one particular parent usually tended to be in the peripheral region of the metaphase plate that surrounded the central region containing the centromeres from the other parent. However, these results contrasted completely with those obtained previously in that Secale centromeres tended to be more central than Hordeum centromeres in H. chilense X S. africanum, but more peripheral than Hordeum centromeres in H. vulgare x S. africanum. As centromeres of the parental set with the larger chromosomes (i.e. Secale) can be either inside, or outside, centromeres from the parental genome with the smaller chromosomes (i.e. Hordeum), then clearly, a tendency for a concentric separation of parental genomes is not a packing phenomenon determined by chromosome' size perse, but is presumably under genotypic control. Introduction 1984a). Concentric parental genome separation (CPGS) of centromeres (Bennett, 1984a) occurs in a cell when: (1) centromeres from one parent are on average significantly farther from the MCP than are centromeres from the other parent; and (2) all centromeres from one parent lie within a circle drawn in the plane of the metaphase plate, which excludes all other centromeres (e.g. see Figs 4, 5; and Finch & Bennett, 1983). In H. vulgare X S. africanum and H. vulgare X 5. cereale, all Secale chromosomes were larger than any Hordeum chromosome. (N.B. In this paper, chromosomes from Secale in a hybrid will be called Recent quantitative studies of metaphase chromosome positions in reconstructed root tip cells of Hordeum vulgare X Secale africanum and H. vulgare X 5. cereale showed a significant tendency for the centromeres of the genome from H. vulgare to be nearer the cell mean centromere position (MCP) than were the centromeres of the genome from Secale (Finch et al. 1981; Finch & Bennett, 1981). Spatial separation of centromeres into two groups according to parental origins was termed parental genome separation (Finch & Bennett, 1981; Bennett, Journal of Cell Science 87, 291-304 (1987) Printed in Great Britain © The Company of Biologists Limited 1987 Key words: genome separation, centromere position, Hordeum X Secale. 291 'Secale chromosomes' when this aids brevity without confusion with chromosomes in non-hybrids; and similarly for chromosomes from other parents.)It was therefore questioned whether a tendency towards CPGS was caused by genetic control or was a packing phenomenon due to some mechanical constraint that preferentially brought smaller chromosomes near the centre of the metaphase plate. However, Finch et al. (1981) found negative correlations between chromosome volume and distance from the MCP for centromeres of either parent separately, in the same hybrid cell where these two characters were positively correlated for the cell as a whole. This suggested that the tendency towards CPGS was under genotypic control, since a mechanical effect on chromosome size should act similarly both within and between parental genomes in hybrid cells (Finch et al. 1981; Bennett, 1982). This paper describes the karyotype, and the relative positions within cells of centromeres from either parent, in the diploid hybrid, H. chilense X S. africanum. All Secale chromosomes were again so much larger than any Hordeum ones that their identities as to specific origin were unequivocal in hybrid cells. This hybrid thus provides another test of whether centromeres of small chromosomes tend to be relatively more central on a metaphase plate than do those of large chromosomes. If Hordeum centromeres were again more central in hybrid metaphases, this might support the hypothesis that packing constraints acting on relative chromosome size control centromere position, at least in hybrids whose parents differ greatly in chromosome size. However, if Hordeum centromeres were the more peripheral, then this hypothesis must be abandoned in favour of one invoking genotypic control of centromere position. had seven Hordeum and seven Secale chromosomes. Unlike our H. vulgare X S. africanum hybrids (Finch et al. 1981), H. chilense X 5. africanum flowered profusely each year. However, no chiasmata were seen in 22 metaphase I pollen mother cells from a sample anther and all plants had indehiscent anthers at maturity and were sterile on open pollination. Roots of parent species came from seeds germinated for 2 days at 20 °C in the dark on filter paper moistened with tapwater. Actively growing hybrid and parental root tips about 1 cm long were excised and fixed at once or after pretreatment for 24 h at 0—1 °C in freshly aerated tapwater to accumulate metaphases (Subrahmanyam & Kasha, 1973). Electron-microscope study Roots fixed in 5 % (v/v) glutaraldehyde in O'lmoll" 1 phosphate buffer for 4-24 h were prepared for EM study according to Bennett et al. (1979). Serial sections of all the chromosomes of metaphase cells EMI to -9 and two cells from each parent were cut 0-1 fim thick, photographed and printed at x l l 800 final magnification. None of the 77 and 98 sections of H. chilense cells was lost, but in nine hybrid and two 5. africanum cells, prints of one to two of the 105-179 sections were unavailable, a mean overall loss of 0-63% of sections. The volume (in fun) and arm volume ratio or AVR (long arm volume -f- short arm volume) of each chromosome, and the volume of the satellite when nucleolar-organizing regions (NORs) were visible, in reconstructed cells were estimated from prints using the MOP Videoplan image analyser as previously described (Bennett et al. 1982; Heslop-Harrison & Bennett, 1983). This identified the parental origin of each chromosome (see Results). The three-dimensional mean centromere position (MCP:x,;y,2) of all 14 chromosomes, distance (CD:.v,3>,z) of the middle of the centromere of each chromosome from the M C P : * ^ ^ , and, for the genome from each parent separately, genome mean distance (GMD:.v,v,z) of the centromeres of its seven chromosomes from the MCP:.v,y,z of all 14 chromosomes were calculated for each cell as in Finch et al. (1981) and Heslop-Harrison & Bennett (1983). Materials and methods Genotypes and plant culture Six Fj hybrids (2rt = Zx = 14) were produced by pollinating a spike of Hordeum chilense Roem. & Schult. (2n = 2x = 14) Plant Breeding Institute line 1 with pollen from Secale africanum Stapf (2n = 2x = 14) Plant Breeding Institute line R102 (Finch & Bennett, 1980). Embryos excised 3 weeks later were kept on agar for 3-24 weeks while developing into plantlets. After agar culture, plants were grown for 1-35 months in compost and/or hydroponics according to Finch et al. (1981), before roots were fixed. In both electron-microscope (EM) and light-microscope (LM) studies, most metaphases came from roots of plants grown in compost for 32-35 months and then hydroponics for 3-10 days. All H. chilense X S. africanum hybrids were vigorous, healthy plants showing little or no sign of the mitotic instability seen in many Hordeum hybrids (Finch, 1983), and nearly all the many somatic mitoses seen and all used 292 T. Schwarzacher-Robinson et al. Light-microscope study Roots fixed in acetic acid—chloroform—ethanol (8:25:50, by vol.) for 24 h were stained by the Feulgen method. A squash preparation of the meristematic tip of each root was ma<je, on a separate slide, sometimes irrigating with propionic orcein to deepen stain. Metaphase cells chosen solely because each had seven Hordeum and seven Secale chromosomes in focus in one field of view under the X100 objective were photographed and printed at X1350-2250 final magnification. Rectangular coordinates in the plane of the print were measured for each centromere middle directly or with the digitizer, and the two-dimensional mean centromere position (MCP:.vj>) of all 14 chromosomes, distance (CD:.x,;y) of the centromere middle of each chromosome from the MCP:x,_y and, for the genome from each parent separately, genome mean distance (GMD:xj>) of the centromeres of its seven chromosomes from the MCP:x v y of all 14 chromosomes were calculated for each metaphase according to Finch et al. (1981). Hordeum vulgare L. cv. Sultan X 5. africanum Stapf Results for H. chilense X S. africanum are compared in the present discussion with results previously obtained for reconstructed root tip metaphase cells in H. vulgare cv. Sultan X S. africanum. The methods used to obtain the latter data were substantially the same as those used in the present work and have been described (Finch et ai. 1981). Results Electron-microscope reconstructions The volume and arm volume ratio of each chromosome were measured in reconstructed metaphases of two cells from each parent and in hybrid cells EMI to-9. Data from parents indicated that most or all chromosomes in hybrid cells should be identifiable as to parental origin by size. Thus in the parental lines that gave the present hybrids, the 1C DNA amount was estimated as 7-4pg in S. africanum and 5-4pg in H. chilense (Bennett & Smith, 1976). In each reconstructed parental metaphase, the largest chromosome volume was 1-27 or 1-32 (mean 1-29) times the smallest, in Secale, and 1-39 or 1-51 (mean 1-45) times the smallest, in Hordeum, and volume differences between adjacent chromosomes ranked by size were similar over the whole size range. Therefore, assuming direct proportionality of volume to DNA content in a chromosome, most or all Secale chromosomes should exceed Hordeum chromosomes in volume in hybrid cells; and observation confirmed this. It was obvious from chromosome volumes alone that, in each of the cells EMI to -9, the seven largest and seven smallest chromosomes were from Secale and Hordeum, respectively, with a distinct size gap between the smallest from Secale and the largest from Hordeum (Fig. 1). Thus, the largest chromosome volume in a cell was only 1-19-1-27 (mean 1-21) times 3 4 5 6 7 Relative volume (%) Fig. 1. Histogram of the relative volume of each chromosome in cells EMI to -9 as a percentage of the total volume of chromosomes in its cell. The distinct gap in relative size was used to distinguish chromosomes of the respective haploid parental genomes from H. chilense (open) and S. africanum (filled). the seventh largest, but 1-64—1-85 (mean 1-72) times the eighth largest. The eighth largest was only 1-26-1-40 (mean 1-33) times the smallest. However, the seventh largest was 1-73-2-01 (mean 1-89) times the smallest, and 1-29-1-52 (mean 1-42) times the eighth largest. The parental origins of all chromosomes, and the individual identities of 12-14 chromosomes were clear in all nine hybrid cells. Table 1 gives, for each chromosome in cells EMI to -9, its volume as a percentage of the total volume for its parental set within its cell, and its arm volume ratio. Chromosome identifications in cells EM3, -6 and -9 were based on Fig. 2, which shows the mean hybrid karyotype from reconstructed mitoses in cells EMI, -2, -4, -5, -7 and -8 where all chromosome types were individually identifiable and of accurately known volume. Hordeum types were numbered in descending order of mean size in cells EMI, -2, -4, -5, -7 and -8 and Secale types as in H. vulgare X S. africanum (Bennett, 1982). These numbers do not imply interspecific homoeologies. Expression of the NOR in hybrid cells seen at the EM level was as reported by Finch & Bennett (1980) and in the present paper in the LM. Diploid parental cells had two NOR pairs in H. chilense and one NOR pair in S. africanum. In all nine hybrid cells, both Hordeum NORs were visible but the Secale NOR was not. Arm volume ratios, and volumes as percentages of the total genome from the same parent in the cell of the most distinctive chromosome types from Hordeum (two satellite types) and Secale (chromosome 5) in hybrid cells (Table 1) showed no significant differences in (-tests from those of parental homologues, except that the mean AVR of H. chilense chromosome 5 was higher in parent (AVR = 2-26) than in hybrid (AVR = 2-01) cells (P<0-05 in 2-tailed (-test). However, the total volume of the genome from Hordeum was consistently and significantly smaller, relative to that of the genome from Secale, than expected from parental 1C DNA amounts (Table 2), suggesting that allocycly may occur in this hybrid. Table 3 gives, for each parent in each of reconstructed hybrid cells EMI to -9, the genome mean distance (GMD :x,;y,z) between the seven centromeres in that parental genome and the mean position of all 14 centromeres in the cell (MCP:xj>,z). In seven cells, the genome mean distance of Hordeum centromeres from the cell mean centromere position exceeded that of Secale centromeres, significantly so in cells EMI, -5 and -8. In cell EM2, parental genome mean distances of centromeres from the cell mean centromere position were almost equal to each other. The genome mean distance of Secale centromeres exceeded that of Hordeum centromeres from the cell mean centromere position by over 1 % in only one cell (EM7), but not significantly so. Differences between Genotypic control of centromere positions 293 Hordeum and Secale in mean distance of centromeres from the cell mean centromere position were highly significant for separate pooled sets of untreated and cold-treated hybrid cells, and very highly significant for all nine cells pooled (Table 3). The ratio of Secale to Hordeum in genome mean distance of centromeres from the cell mean centromere position ranged from 1:0-94 to 1:1-75 (mean 1:1-31) in hybrid cells. Untreated and treated cells did not differ significantly in this ratio. Table 4 gives correlation coefficients and their probabilities in linear regressions of distances (CD:x,y,z) between centromeres and cell mean centromere position on chromosome volumes for each hybrid cell. Coefficients for the whole hybrid genome were negative in: (1) seven of nine individual reconstructed cells, significantly so in cells EMI (P< 0-001) and EM8 (P<0-01); (2) pooled sets of untreated (P< 0-05) and treated (P< 0-001) cells; and (3) all nine cells pooled (P<0-001). Only the smallest and least significant such coefficients were positive (cells EM2 and -7) and only two exceeded 0-43 in absolute value (cells EMI and-8). Coefficients for genomes from separate parents in hybrid cells showed no consistent trend even for pooled data. They were negative in three cells for the genome from Hordeum and in seven cells for that from Secale and significantly negative for that from Secale in cell EMI (P<0-05) and positive for that from Hordeum in cell EM2 (/ ) <0-01). Light-microscope study LM studies agreed unambiguously with the EM result that in hybrid cells, all Secale chromosomes were clearly larger than any Hordeum ones (Fig. 3C,D). Despite the lesser accuracy of LM measurements compared with the present EM estimates, this finding also seemed likely beforehand, merely from LM observations of chromosome lengths, given the parental \C DNA values and that length is proportional to Table 1. Volumes of complete haploid genomes and individual chromosome types (as percentages of sum of all chromosomes from same parent in the cell) from each parent and chromosome arm volume ratios in reconstructed metaphases of H. chilense X S. africanum (cells EMI to -9) and parents (two cells each) % Volume (V) and arm volume ratio (AVR) of chromosome type 1 Genome Parent Cell H. chilense EMI EM2 EM3 V \JIU111C 3 EM4 EM5 EM6 EM7 EM8 EM9 8 S. afneanum 3 2 (Mm ) V AVR V AVR V AVR V AVR 46-08 46-50 51-07b 45-81 48-13 46-77 43-81 40-89 43-64 16-64 15-59 15-88C 16-48 15-73 1-26 1-53 1-39 1-48 1-40 1-52 1-56 1-63 1-34 1-48 14-56 14-24 1-27 1-16 14-47 14-95 13-12C 13-93 14-52 1-03 1-03 1-03 1-02 1-13 1-48 14-33 b Mean of EMI t o - 9 : 45-86 Parent mean: 40-30 EMI EM2 EM3 EM4 EM5 EM6 EM7 EM8 EM9 83-55 82-29 91-84C 82-26 86-10 84-07 76-34 73-05 75-49 Mean8 of EMI to -9: Parent mean: 81-67C 16-25 16-31 15-74 1-20 119 115 14-87 16-06 14-74' 16-20 15-48 16-01 14-24 15-21 14-73 16-08 1-18 15-28 e 15-73 15-69 h 15-00 16-26 15-33 15-72 15-03 15-59 15-54 •19 •12 1-16 1-17 c 1-06 1-06 h 1-04 1-03 105 102 105 1-02 1-04 15-22 15-03 14-48 ' 14-55 14-04 15-04 15-00 15-00 15-31 14-85 84-72 115 113 116 1-15 1-18 1-17 1-08 1-11 1-13 1-14 d 14-56 14-36 14-05 14-95 13-57 t 14-77 15-49 14-33b 15-21 14-64 14-47 15-17 15-40 14-98 14-94 d 1-23 1-27 1-30 1-23 1-17 t 1-23 1-81 1-88 1-87 1-91 2-01 1-78 1-81 1-90 1-56 1-84 V 7 6 5 4 AVR V AVR 1-07 13-17" 1-07 13-74' 12-18"'c 119 1-07 13-60" 102 13-63" 1-01 12-83' 14-02" 1-01 14-31" 0-94 13-68" 1-08 1-05 13-46 14-06 13-74 14-85 1-08 1-05 1-10 14-02' 13-81" 15-61"'c 13-47' 14-40* 13-73' 13-65' 14-82" 14-60" 14-21 1-06 14-23 2-12 2-23 1-76 2-23 2-05 1-99 1-83 1-81 2-06 2-01 14-09" 2-26 13-87" 1-11 12-81 13-09 14-23b 13-94 13-54 14-42 13-75 13-55 14-23 13-73 2-14 2-31 2-29 2-24 2-28 2-48 2-24 2-32 2-30 2-29 13-33 13-31 12-85b 14-09 13-66 14-09 13-06 13-76 13-47 1-01 1-03 1-01 1-05 1-09 111 1-04 1-01 1-03 1-04 13-19 2-27 c 14-72 14-30 14-39b 14-42 14-48 14-61 14-34 14-28 13-33 14-32 e 1-61 1-50 1-52 1-56 1-63 1-53 1-49 1-48 1-50 1-54 13-51 V AVR 12-26 11-61 12-7T 11-77 11-88 12-49 12-83 12-03 12-53 1-58 1-70 1-73 1-70 1-64 1-74 1-68 1-62 1-74 12-23 1-68 13-42 13-09 13-96b 12-79 13-38 12-05 12-96 12-98 13-09 13-08 1-38 1-48 1-37 1-42 1-41 1-56 1-43 1-41 1-38 1-43 Data on individual chromosome types in parents are from three replicates of H. chilense chromosome 6, and four replicates each of others. "NOR visibly expressed. b Maximum estimate. "Minimum estimate. d l h These chromosomes were stuck together in sections 70—80 and so volume and arm ratio estimates are less exact than usual. Volumes in /im3 are: (d) ^8-05 (AVR = =1-37) and (h) S14-47 (AVR = =»l-04). "These are chromosomes 1 and 4 from H. chilense, but it is unclear which is which. Volumes in /im3 are: 6-58 (AVR = 1-11) and 7-87 (AVR = 1-05). 'This chromosome was off the metaphasc plate and so its volume (13-86/im3) and AVR (1-45) may be anomalous. g Excludes data not in body of Table. 294 T. Schwarzacher-Robinson et al. 1 3 2 4 6 5 7 1 2 3 4 5 6 7 aa X X X X X X X V(%) 9-98 9-68 9-49 9-24 8-67 8-61 8-39 5-81 5-51 5-17 5-13 5-04 4-94 4-34 AVR 1-04 1-89 1-13 1-55 1-04 2-26 1-42 1-20 1-47 1-22 1-06 2-05 1-03 1-65 Fig. 2. H. chilense X S. afncanum idiogram and chromosome type mean volumes (V) and arm volume ratios (AVR) of serially sectioned reconstructed metaphases in cells EMI, -2, -4, -5, -7 and -8. Chromosomes are in order of mean volume as % of total hybrid genome volume. Chromosome types from Secale (open) are numbered (top) after Bennett (1982). Types from Hordeum (filled) are numbered (top) in order of mean volume. NORs are shown by stippling in the type from Secale (based on four NORs in two serially sectioned reconstructed S. afncanum cells, as this NOR was not seen in hybrid cells) and indenting in the types from Hordeum. Table 2. Total chromosome volume and percentages of it from each parent and x2 tests for differences between volumes in jxm3 observed and those expected from parental 1C DNA amounts in H. chilense X S. africanum cells EMI to -9 Chromosome volume % Observed from Cell EMI EM2 EM3 EM4 EM5 EM6 EM7 EM8 EM9 Mean of EMI to -9 Total (Mm3) 129-63 128-79 142-91 128-07 134-17 130-75 120-15 113-94 119-13 127-50 Hordeum Secale 35-55 3611 35-74 35-77 35-87 35-77 36-46 35-89 36-63 64-45 63-89 64-26 64-23 64-13 64-23 63-54 64-11 63-37 64-04 35-96 2-345 1-957 2-439 2-163 2-197 2-207 1-615 1-855 1-508 18-287 d.f. P< 1 1 1 1 1 1 1 1 1 0-2 0-2 0-2 0-2 0-2 0-2 0-3 0-2 0-3 8 0-02* Expected percentages are 42-19 (Hordeum) and 57-81 (Secale). DNA content in a chromosome. Thus in samples of seven unsquashed metaphases from each parental species, the longest chromosome of the 14 in its cell was on average l - 3 times as long as the shortest in S. africanum, while in H. chilense it was on average 1-5 times as long as the shortest (Finch, unpublished) and within each cell, size differences between adjacent chromosomes ranked by size were similar over the whole size range. Satellite chromosomes and sometimes heterochromatin gave further help in identifying chromosomes. S. africanum has one satellite pair (Fig. 3B) but its NOR was seldom visible in hybrid metaphases and then only on a large chromosome. H. chilense has two satellite pairs, both distinct in shape from that of S. africanum (Fig. 3A). Both NORs from H. chilense were visibly expressed in nearly all hybrid metaphases (Fig. 3C,D) and these were always among the seven small chromosomes identified as the Hordeum genome. In cold-treated parental roots, conspicuous telomeric heterochromatin was often visible in metaphase chromosomes of S. africanum (Fig. 3B) but not H. chilense. Significantly, such telomeric heterochromatin was also visible in some hybrid metaphases after cold treatment (Fig. 3B,C), but only on the seven large chromosomes identified as from Secale. Chromosomes in cells from treated roots tended to be shorter and thicker than those in cells from untreated roots. In both treated and untreated hybrid roots, however, the parental origin of each chromosome in a cell was clear. Table 5 gives, for each parent in each of 60 squashed hybrid metaphases, the genome mean distance (GMD:x,y) between the seven centromeres in that parental genome and the mean position of all 14 centromeres in the cell (MCP ::t,;y). Table 5 also gives, for each cell, the ratio of the Secale to the Hordeum GMD:xj>. In 41 (68-3%) of these 60 cells, the mean distance (GMD:x,;y) of Hordeum centromeres from the cell mean centromere position (MCP:x,;y) exceeded that of Secale centromeres from Genotypic control of centromere positions 295 Table 3. Means (GMD: \,y,z) and population standard deviations (s.D.) of the distances between the cell mean centromere position (MCP: x,y,z) and centromeres of the genome from Hordeum and of that from Secale and ratio of Secale to Hordeum GMD:x,y,z in H. chilense X S. africanum cells EMI to -9 and results of one-tailed t-tests of significance of differences in GMD: \,y,z between centromeres from Hordeum and those from Secale (-test GMD:*,y,2 S.D. Ratio ( d.f. Hordeum Secale Hordeum Secale Hordeum Secale 3-29 1-88 2-48 2-49 2-99 2-39 0-44 0-81 0-84 0-95 0-56 0-63 1:1-75 3-742 12 <0-005" 1:1-00 0-028 12 >0-45 1:1-25 1-753 12 <0-l Hordeum Secale Hordeum Secale Hordeum Secale Hordeum Secale Hordeum Secale Hordeum Secale Hordeum Secale 8-05 6-24 3-30 2-82 2-91 2-00 3-86 2-83 3-14 3-34 3-43 2-07 3-15 2-67 1-95 2-38 0-89 1-18 0-91 0-60 0-99 1-48 0-87 0-55 0-80 0-78 0-62 0-98 1:1-29 2-627 40 <0-01»* 1:1-17 0-808 12 <0-25 1:1-46 2-051 12 <0-05» 1:1-36 1-423 12 <0-l 1:0-94 0-472 12 <0-35 1:1-66 2-970 12 <0-01" 1:1-18 1-021 12 <0-2 Hordeum Secale Hordeum Secale 8-00 6-29 8-01 6-27 218 2-40 2-11 2-39 1:1-27 3-379 82 <0-005« 1:1-28 4-306 124 Genome from EMI EM2 EM 3 Mean of EMI to -3 (untreated) EM4 EM5 EM 6 EM7 EM8 EM9 Mean of EM4 to -9 (cold-treated) Mean of EMI to -9 P Mean Cell <0-0005»« Each GMD :.\\y,z value is in ^im (individual cells) or is the mean of all 42, 84 or 126 percentage distances of centromeres from their cell MCP:.v,v,2 (pooled data from 3, 6 or 9 cells), where the sum of the 14 distances in a cell = 100%. the cell mean centromere position, significantly so in cells 21, 41, 51 and 54 and highly significantly overall. In the remaining 19 cells, the mean distance of Hordeum centromeres from the cell mean centromere position was less than that of Secale centromeres from the cell mean centromere position, but never significantly so. Thus although spreading may greatly disturb chromosome positions in a cell, LM measurements of mean two-dimensional relative positions of parental genomes in hybrid cells in regard to centromeres agreed with three-dimensional EM reconstructions. Since far more cells could be studied in the LM than in the EM, the LM study was used to show that cold treatment and prolonged and varied cultivation had little effect on relative genome positions in the hybrids, as far as centromeres were concerned. Variance analyses and i-tests done on the ratios of Secale to Hordeum G M D : . V , J I showed no significant differences among hybrids, between compost (cells 7-20) and hydroponics culture, between fixations 1-2 months after embryo culture (cells 1-20) and those at 32-35 months, between pretreated (cells 1-40) and 296 T. Schwarzacher-Robinson et al. untreated cells, or between cells from plants treated with colchicine 32 months before fixation (cells 34-40, 54—60), and others. (Mitoses in roots from colchicinetreated plants seemed no different from normal in any way.) Discussion Concentric parental genome separation in H. chilense X S. africanum The genome mean distance (GMD:x,y,z) from the cell mean centromere position of centromeres from Hordeum exceeded the GMD:x,y,z of centromeres from Secale in seven of nine reconstructed mitoses, significantly so in three cells and overall, and by an average of 22% of the Hordeum GMD:x,y,z (Table 3). LM data similarly showed that in spreads of most hybrid root tip metaphases, the mean distance (GMD:x,>>) from the cell mean centromere position was greater for centromeres from Hordeum than for those from Secale. This difference was highly significant overall though not significant in most single Table 4. Correlation coefficients and their probabilities in linear regressions of distances (CD: x,y,z) between centromeres and cell mean centromere position on chromosome volumes for each of cells EMI toEM9 P Correlation coefficient (2-tailed) Cell Genome origin EMI Hordeum Secale Whole cell Hordeum Secale Whole cell Hordeum Secale Whole cell -0-426 -0-818 -0-834 0-919 0-707 0-232 0-297 -0-208 -0-430 <0-4 <0-05» <0-001«* <0-01« <0-l <0-5 <0-6 <0-7 <0-2 Hordeum Secale All 42 chromosomes Hordeum Secale Whole cell Hordeum Secale Whole cell Hordeum Secale Whole cell Hordeum Secale Whole cell Hordeum Secale Whole cell Hordeum Secale Whole cell Hordeum Secale All 84 chromosomes Hordeum Secale All 126 chromosomes 0-349 -0-034 -0-341 -0-481 -0-151 -0-291 0-341 0-559 -0-406 -0-206 -0-211 -0-418 0-334 -0-273 0-134 0-001 -0-661 -0-696 0-392 -0-025 -0-253 -0-012 -0-134 -0-358 0-106 -0-100 -0-353 <0-2 <0-9 <0-05» <0-3 <0-8 <0-4 <0-5 <0-2 <0-2 <0-7 <0-7 <0-2 <0-5 <0-6 <0-7 >0-9 <0-2 <0-01« <0-4 >0-9 <0-4 >0-9 <0-4 <0-001»« <0-5 <0-5 <0-001"# EM2 EM3 EMI to -3 (untreated) pooled EM4 EM5 EM6 EM7 EM8 EM9 EM4 to -9 (cold-treated) pooled EMI to -9 pooled A separate coefficient is given for the genome from each parent and the whole cell. For pooled data from 3, 6 and 9 cells, distance and volume values used were percentages of total for 14 chromosomes. cells (Table 5), and averaged only about 8% of the GMD:jc,y of centromeres from Hordeum. The squash technique may drastically disturb relative chromosome positions, but results from nine reconstructed metaphases, where estimates of relative centromere positions differ only negligibly from those in vivo, agreed with results from squashes. As the mean distance from the cell mean centromere position was greater for centromeres from Hordeum than for those from Secale, as a consistent tendency in treated and untreated roots of several genotypes grown in a variety of conditions over a 3-year period, it is concluded that H. chilense X S. africanum showed a real significant tendency towards a concentric parental genome separation for centromeres. Thus, it is like H. vulgare X S. africanum and H. vulgare XS. cereale, the two other Hordeum X Secale hybrids examined using reconstructed metaphases (Finch et a!. 1981; Finch & Bennett, 1981). When testing for concentric separation of parental genomes, it is worth examining separately first the tendency towards CPGS in the population of cells, and second the proportion of individual cells showing CPGS (as defined in the Introduction). In a simulation, two sets of seven points were placed at random on an approximately circular metaphase plate and this was repeated 10000 times. These showed that CPGS as defined in the Introduction, would occur by chance in not more than 1-23% of metaphases in diploid hybrids where 2w = 14. However, as Figs 4 and 5 show, CPGS occurred in four of 18 (i.e. 22-2%) of reconstructed hybrid metaphases, including one of nine (i.e. 11-1%) in H. chilense X S. africanum (Fig. 4), and three of nine (i.e. 33 %) in H. vulgare X 5. africanum (Fig. 5). The frequency of concentric parental genome separation obtained approached significance for H. chilense X S. africanum (P = 0-105) and was significantly greater than expectation (i.e. 1-23%) both for the pooled data (P <* 0-001), and for H. vulgare XS. africanum (P <S 0-001). Cell 3 in Fig. 5 had only 13 chromosomes and has a slightly larger expectation than 1-23 %, but even omitting this cell leaves the probabilities as <0-01 for both pooled data and H. vulgare X S. africanum data. The significant overall tendency for CPGS found in H. chilense X 5. africanum and H. vulgare X S. africanum using pooled data for reconstructed cells might reflect the occurrence of CPGS in a minority of cells while the majority of cells show no such tendency. To investigate this possibility, tests were repeated on pooled data, but excluding cells with CPGS. Thus, when data for only eight cells of H. chilense X S. africanum (i.e. omitting cell EMI; Fig. 4) were pooled, Hordeum centromeres were still significantly farther (P<0-01) from the MCP than those of Secale were. Similarly, when data for only six cells of H. vulgare X S. africanum (omitting cells 1, 3 and 7 in Fig. 5) were pooled, Hordeum centromeres were still significantly nearer (P< 0-005) to the MCP than those of Secale were. Thus, cells without CPGS nevertheless still display a strong tendency towards it. Comparing the mean distance of centromeres of either parental genome from the cell MCP permits a relatively simple yet highly meaningful test for a tendency towards CPGS in a population of cells from a hybrid. However, it involves calculation and does not provide a ready visual impression of the degree and Genotypic control of centromere positions 297 type of separation. On the other hand, the test for CPGS in single qualifying cells, using a circle drawn in the plane of the metaphase plate, does give an immediate visual impression of the separation but is biologically meaningful only in qualifying cells with circular, or nearly circular, metaphase plates. However, the shape of a metaphase plate is restricted by, and often closely reflects, the shape of the bounding cell wall. Thus, the test becomes increasingly artificial as cells, and the shape of the constrained metaphase plate, become more elongated. For example, the distributions of centromeres in Fig. 6A and B are identical except for the foreshortening in B due to the reduction in the scale of the vertical axis. The mean distance from the MCP of points for parent 1 is significantly less than for parent 2 in both Fig. 6A and B. Consequently, an attempt is being made to develop an alternative test for arrangements essentially similar to CPGS that is biologically meaningful in elongated and non-elongated metaphase plates. Preliminary work indicates that drawing the polygons of minimum perimeter that contain all the centromeres from a parental genome in a cell may provide a simple but meaningful general test for a range of types of parental genome separation, including the concentric form. Figs 4 and 5 show for each cell such a polygon drawn for the parental genome, which for that hybrid was on average nearer the MCP. This test has the advantage that it is simple to perform, involves little calculation once basic simulations like those below have been done, and provides an immediate visual impression of the degree and type of parental genome separation. In a simulation, two sets of seven points were again placed at random on an approximately circular metaphase plate, and polygons of minimum perimeter were then drawn round each. This was repeated 10000 times, and the mean number of points from one set included in the polygon for the other set (range 0-7) was 2-1932, and 10-64% of cells had a polygon that contained no point from the other set. These values were adopted as random expectations in the present work. Using this test, genome separation is indicated by the number of centromeres of either parent contained in polygons for the other parent deviating significantly from expectation (i.e. 2-1932 per cell when 2n = 14). Scores tending significantly to zero for both parents indicate a significant tendency towards a side-by-side arrangement of parental genomes, while scores tending significantly towards zero for one parent but towards seven for the other parent, indicate a significant tendency towards CPGS. The total number of Hordeum centromeres contained in polygons for Secale in the nine reconstructed cells of H. chilense X 5. africanum (Fig. 4) was five, Fig. 3. Squashed metaphases from cold-treated roots of//, chilense (A), S. africanum (B) and H. chilense X S. africanum (C,D) stained in Feulgen with (A) or without (B-D) propionic orcein. Satellites (s) by visible NORs and Secale telomeric heterochromatin (arrows) are marked. Secale centromeres (arrowheads) are marked in (C,D). Bar, 10 fjm. 298 T. Schwarzacher-Robinson et al. Table 5. Mean distances (GMD:x,y) in jim of centromeres of genomes from H. chilense (H.C.) and S. africanum (SA.) from cell mean centromere positions (MCP:x,y), and ratios of SA. GMD:x,y to H.C. GMD:x,y, in 60 hybrid cells Cold-treated Untreated Genome mean <listance Cell 1 2 3 4 5 6 7 8 9 10 11 12 13 14 IS 16 17 18 19 20 Genome mean distance Genome mean distance Plant H.C. S.A. Ratio Cell Plant H.C. S.A. Ratio Cell A A A A A A 10-04 9-27 8-75 8-47 7-52 8-75 11-58 9-14 11-68 8-98 9-76 8-92 7-95 7-54 7-75 9-30 12-13 11-55 8-28 5-47 7-67 7-26 7-91 7-76 • 7-24 11-32 10-62 9-09 10-18 6-41 7-04 7-44 7-68 7-57 8-91 6-38 9-18 10-39 7-60 7-33 1:1-31 1:1-28 1:1-11 1:1-09 1:1-04 1:0-77 1:1-09 1:1-01 1:1-15 1:1-40 1:1-39 1:1-20 1:1-04 1:1-00 1:0-87 1:1-46 1:1-32 1:1-11 1:1-09 1:0-75 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 B B B B B B B B B B B B B D D D D D D D 10-22 8-76 8-64 8-89 8-20 6-57 7-13 7-11 5-83 5-71 6-95 5-99 5-19 6-51 7-05 6-93 8-80 6-61 7-91 5-70 7-15 6-30 6-92 7-47 7-58 6-13 6-72 6-93 6-06 7-08 8-73 7-60 8-56 4-86 5-67 6-20 8-69 7-08 8-75 7-24 1:1-43* 1:1-39 1:1-25 1:1-19 1:1-08 1:1-07 1:1-06 1:1-03 1:0-96 1:0-81 1:0-80 1:0-79 1:0-61 1:1-34 1:1-24 1:1-12 1:1-01 1:0-93 1:0-90 1:0-79 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 Mean of B C D E E E E E E F F F F F H.C. S.A. Ratio 17-52 7-20 7-10 6-84 9-21 B 8-52 B B 10-33 B 5-23 4-34 B B 6-77 C 7-95 6-50 C 5-12 C D 7-86 10-30 D 7-72 D D 7-30 D 6-59 D 6-35 D 6-20 1-60: 8-04 11-35 5-41 5-45 5-30 7-30 8-37 10-99 6-35 5-43 8-54 4-78 6-62 6-54 5-30 8-54 6-69 6-44 6-01 6-25 6-88 7-42 1:1-54° 1:1-33 1:1-30 1:1-29 1:1-26 1:1-02 l:-094 1:0-82 1:0-80 1:0-79 1:1-66' 1:0-98 1:0-78 1:1-48* 1:1-21 1:1-15 1:1-13 1:1-10 1:1-02 1:0-90 l:l-08 b Plant B B B B •H. chilense GMD:*,.v>S. africanum GMD:x,y (P<0 •OS, 1-tail) in t-test (d.f. = 12). h H. chilense GMD:x,j>>S. africanum GMD:x,y (P<0 •005) in Mest (d.f. = 59). while the total number of Secale centromeres contained in polygons for Hordeum (omitted for clarity from Fig. 4) was 34. Compared with random expectation (19-74) these numbers were, respectively, significantly lower (P<0-01) and higher (P<0-01). Similarly, in the nine cells of H. vulgare X 5. africanum (Fig. 5) the total number of Secale centromeres contained in polygons for Hordeum was three, while the total number of Hordeum centromeres contained in polygons for Secale (omitted for clarity in Fig. 5) was 41. Compared with random expectation (19-74) these numbers were, respectively, significantly lower (P< 0-001) and higher(P < 0-001). Further, the probabilities that, in samples of nine cells, as in Figs 4 and 5, and 18 as in both pooled, the numbers of polygons drawn there that contain no centromere from the other genome would be as many as the observed 5, 6 and 11 are <0-01, < 0 0 0 1 and <*0-001, respectively. Thus, all three types of test applied to both hybrids agree in showing that there is both a significant number of individual cells with CPGS for centromeres, and a significant tendency towards CPGS for pooled results both for all cells, and excluding those cells not showing CPGS. Clearly, therefore the phenomenon is real in metaphase cells of these hybrids, which raises two important questions concerning how widely it occurs and how it is controlled. TTie occurrence of concentric parental genome separation Besides the above mentioned work on H. chilense X S. africanum, H. vulgare xS. africanum and H. vulgare X S. cereale, EM serial thin section reconstructions of three of four serially sectioned metaphases in H. vulgare X H. bulbosum premeiotic anther archesporium (Bennett, unpublished) and one of two in H. marinum X H. vulgare embryos showed CPGS (Finch & Bennett, 1983). Significant differences between parental genomes in mean distance of centromeres from the MCP at metaphase were shown in H. vulgare XH. bulbosum embryos and roots (Finch & Bennett, 1983) and similar differences were noted but not quantified for centromeres in H. vulgare X H. bulbosum and H. marinum X H. vulgare endosperms (Finch & Bennett, 1983), and chromosomes in H. vulgare X Psathyrostachys fragilis >roots (LindeLaursen & von Bothmer, 1984). All these cases were diploid hybrids, but Linde-Laursen & Jensen (1984) showed quantitatively in four polyploid hybrids (H. roshevitzii X H. vulgare, H. jubatum X H. vulgare, H. vulgare X Triticum aestivum and H. vulgare X Genotypic control of centromere positions 299 H. brevisubulatum ssp. turkestanicum) that "H. vulgare chromosomes were located nearer the centre of the metaphase plate than the non-H. vulgare chromosomes" (using centromere positions as chromosome positions). Thus in all 10 interspecific Hordeum hybrid combinations, involving four genera in all, where chromosome or centromere dispositions were described, concentric separation of centromeres of parental genomes was found and was often clear and significant and in several tissues. This strongly suggests that the phenomenon is widespread in Hordeum hybrids. Indeed there is no report of it having been sought but not found in such hybrids. Partial or complete genome separation has been reported, claimed or strongly suggested in various materials including: (1) non-embryonic somatic cells of naturally occurring plant and animal species (e.g. Triticum aestivum, Avivi et al. 1982; Chlorophytum elatum, Storey, 1968; Caledia captiva, Coates & Smith, 1984) and hybrids (e.g. Rubus procerus X R. laciniatus, Bammi, 1965; and chicken X quail, Bammi et al. 1966); (2) zygotes (e.g. Polychoerus carmelensis, Costello, 1970; and Tigriopus, ArRushdi, 1963); and (3) nuclei of man-made intergeneric hybrid fusion cells of plants (e.g. soybean-pea, Constabel et al. 1975, and soybean-V»«'<2 hajastana, Constabel et al. 1977), and animals (e.g. humanmouse, Rechsteiner & Parsons, 1976). However, as far as the present authors are aware, CPGS has not been reported in other materials. Consequently, whether it has a wider taxonomic distribution is unknown. As CPGS is a special form of genome separation, its occurrence seems unlikely to be restricted to hybrids involving the genus Hordeum. The control of concentric parental genome separation Packing phenomenon or genetic control. When concentric parental genome separation was first noted in H. vulgare X S. africanum, where all chromosomes from Hordeum are smaller than those from Secale, it o 6> o o Fig. 4. Polar views of positions of Hordeum (O) and Secale ( • ) centromeres on metaphase plates, and polygons of least perimeter including all Secale centromeres, in serially sectioned reconstructed cells EMI to -9 (1 to 9, respectively) of H. chilense X 5. africanum. The broken circle in EMI reveals concentric parental genome separation (CPGS). Bar, 300 T. Schwarzacher-Robinson et al. was questioned whether the phenomenon resulted from a genotypic control of centromere position, or whether it was due to some kind of mechanical constraint acting preferentially to bring smaller chromosomes toward the centre of the metaphase plate. In other words, do Hordeum centromeres tend to cluster nearer the centre of the metaphase plate than Secale centromeres because Hordeum chromosomes are smaller than those of Secale ? This concern was increased because many examples are known where within a species (e.g. Yucca, Miiller, 1909; and man, e.g. Ockey, 1969; Rohlfefa/. 1980; Hensef al. 1982) or a hybrid (e.g. chicken-quail, Bammi et al. 1966) small chromosomes tend to lie nearer the centre of the metaphase plate. However, this tendency is by no means general, since Albertson & Thomson (1982) reported a tendency for large chromosomes to be central on the meiotic metaphase plate in Caenorhabditis elegans, while Wollenberg et al. (1982) reported chromosome 1 (the largest chromosome in man) to be more central than expected in females, but not in males. The \C DNA amounts of H. vulgare cv. Sultan (5-5 pg) and H. chilense PBI line 1 (5-4pg) are very similar to each other, but markedly smaller than that of 5. africanum line R102 (7-4pg) (Bennett & Smith, 1976). The same accession of S. africanum (line R102) was used for DNA measurement and as male parent to make the hybrids H. vulgare X 5. africanum and H. chilense X S. africanum. As already noted, all Hordeum chromosomes were markedly smaller than any Secale chromosomes and there was a significant tendency towards CPGS for centromeres in both of these hybrids. However, whereas in H. vulgare X 5. africanum the centromeres of Hordeum chromosomes were significantly nearer the MCP than Secale centromeres were (Fig. 5), it was the Secale centromeres that were significantly nearer the MCP than 1 .W. Fig. 5. Polar views of positions of Hordeum (O) and Secale ( • ) centromeres on metaphase plates, and polygons of least perimeter including all Hordeum centromeres, in nine serially sectioned reconstructed H. vulgare X S. africanum cells (data from Bennett, 1982, and unpublished). Broken circles reveal CPGS in three cells. This figure corrects a small computer graphics error in fig. 1 of Bennett (1982). Bar, 2um. Genotypic control of centromere positions 301 accompanied by significant correlations within parental genomes where one case was positive and the other negative. The conclusion that there is no general tendency for the centromeres of small chromosomes to be nearer the MCP than those of large chromosomes is further supported by results for 10 reconstructed mitotic metaphase plates in root-tip cells of another stable intergeneric hybrid (Aegilops squarrosa X Secale cereale, 2n = 2x = 14) where the centromeres of the seven markedly smaller squarrosa chromosomes were on average farther from the MCP than were Secale centromeres (Bennett, 1984a, and unpublished). Moreover, support for the conclusion that CPGS is under genotypic control comes from our recent observation that in young seeds of H. vulgare X H. marinum ssp. marinum the polarity of CPGS is tissue specific. Thus, in 4-day-old seeds the marinum centromeres were on average significantly peripheral to vulgare centromeres in the diploid embryo cells (Finch & Bennett, 1983; Finch, unpublished), but the opposite was true in triploid endosperm, as the vulgare centromeres were significantly peripheral to those of marinum (Finch, unpublished). Fig. 6. Effect of flat cell shape on test for CPGS. Outer ( • ) and inner (O) genome centromere positions and cell corners have the same horizontal coordinates in cells A and B, but corresponding vertical coordinates are halved in B. In both cells, the mean distance of centromeres from the cell mean centromere position ( + ) is 1-7 times greater (P<0-01) for outer than inner genomes. However, the smallest circle including all inner genome centromeres excludes all outer genome ones only in A, and so only A shows CPGS. Hordeum centromeres were in H. chilense X 5. africanum (Fig. 4). As centromeres of the parental genome with the larger chromosomes can be either inside, or outside, centromeres from another parent with smaller chromosomes, then clearly CPGS, or a tendency towards it, is not a packing phenomenon determined by chromosome size per se, but is presumably under genotypic control. This conclusion was previously drawn for H. vulgare X 5. africanum (Finch et al. 1981) because most correlations between chromosome volume and centromere distance from the MCP within genomes were negative, while all those for whole cells were positive. It is further supported by pooled data from nine H. chilense X 5. africanum cells (Table 4) in that the very highly significant negative correlation between these characters for whole cells was not 302 T. Schwarzacher-Robinson et al. Direct or indirect genetic control. The nature of the presumed genetic control of concentric parental genome separation is unresolved. In particular, it is unclear whether the different positions of chromosomes belonging to different parental genomes are subject to a direct control, or whether they are caused indirectly by some other process. Pohler & Clauss (1984) reported that Secale chromosomes lagged behind Hordeum ones at premeiotic anaphase and at metaphase to telophase of both meiotic divisions in amphidiploid H. vulgare X S. montanum. They suggested that such differences in the rhythm of nuclear division between the parental genomes may offer a plausible explanation for the spatial separation of the parental chromosomes seen by Finch & Bennett (1981) in H. vulgare X S. africanum and H. vulgare X S. cereale. Similarly, LindeLaursen & Jensen (1984) discussed the possibility that observed differences in metaphase spatial distributions between H. vulgare centromeres and others in their hybrids of diploid H. vulgare with four different polyploid species might be due to postulated mitotic asynchrony between the different genomes. If such ideas were right, the spatial separation of parental genomes in Hordeum hybrids would probably not be determined by a direct control but arise indirectly as an effect of whatever causes the asynchronous congression or separation of chromosomes. Whether the suggestions made by Pohler & Clauss (1984) and raised by Linde-Laursen & Jensen (1984) are correct is still unknown, but a comparison of the temporal events of the mitotic cell cycle in H. chilense X S. africanum (where 5. africanum centromeres are central) with those in H. vulgare X 5. africanum (where S. africanum centromeres are peripheral) would provide a telling test. If a tendency to occupy the peripheral position were caused by lagging at anaphase, then the centromeres from S. africanum should lag in H. vulgare X S. africanum while those of H. chilense should lag in H. chilense X 5. africanum. This comparison has not been made and, while no consistent lagging of chromosomes of either parental set was seen in H. chilense X S. africanum roots in the present work, evidence of allocycly in this hybrid was noted above. However, the larger difference in total volume between H. chilense and S. africanum observed than expected is consistent with either (1) early condensation of H. chilense relative to 5. africanum chromosomes or, (2) delayed condensation of S. africanum relative to H. chilense chromosomes. It is incompatible with delayed condensation of H. chilense relative to S. africanum chromosomes, which would decrease the difference in the total volumes of parental genomes compared with that expected assuming strict proportionality with their DNA C values. Thus at the moment there is no reason to expect that H. chilense chromosomes, which are peripheral in H. chilense X S. africanum, tend to lag in mitosis, but rather the reverse. The possibility that the relative positions of chromosomes within the nucleus are subject to direct control(s) has been repeatedly suggested (e.g. see Feldman & Avivi, 1973; Horn & Walden, 1978; Comings, 1980), as has the idea that variation in the intranuclear locations of chromosomes may affect or relate to the extent or effectiveness of their genetic activity (Feldman & Avivi, 1973; Bennett, 1984a). Indeed, the question was recently raised as to whether the intranuclear dispositions of chromosomes and their segments may vary in a regular way within an organism, so that they display different arrangements characteristic of different tissues or stages and, if so, whether such variation may play a causal role in the control of development (Mathogef al. 1984; Bennett, 1984a,6; Heslop-Harrison & Bennett, 1984). Experiments to test these ideas are being done using animals (e.g. Drosophila, Gruenbaum et al. 1984) and angiosperm plants (e.g. grasses, Bennett, Smith & HeslopHarrison, unpublished). Hybrid plants like those discussed in the present work, which provide variation in the intranuclear location of centromeres of a given haploid parental set, so that these are strongly peripheral in one hybrid but strongly central in another, should be valuable materials in which to study: (1) the control and consequences of variation in higher-order nuclear architecture between organisms; and (2) whether parental genomes vary in their intranuclear positions between tissues or developmental stages within an organism. Until the molecular basis of control of higher-order nuclear architecture is more fully understood it will be difficult, if not impossible, to discover if there are genes whose prime function is to control, or modulate, the intranuclear dispositions of basic or parental genomes, individual chromosomes, and/or segments of chromosomes. 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