Fall 2007 Volume 3 No. 2 On Board Stem Cell Politics: 101 Stem Cell Research: What’s at Stake Two years ago U-M announced the opening of the U-M Center for Stem Cell Biology at LSI. Center Director Sean Morrison discusses progress with his research, the Center, and the current state of stem cell research. Let’s start at the beginning — why is stem cell research important? Stem cell research is an interesting and important place to be scientifically because there are many fundamental scientific questions to be addressed. And there are many questions that impact on the future of medicine. What are the questions your research seeks to answer? Michael B. Staebler, member LSI Leadership Council; Partner, Pepper Hamilton LLP and U-M Law ‘69 continued on page 6 My lab tries to identify the genes that are required in this process, because if we can identify the genes and what they do to promote self renewing divisions, we can understand more mechanistically what exactly is happening. That is important because if we could better promote self renewal, we may be able to promote regeneration after injury, for example. We may be able to address certain kinds of birth defects that are caused by premature depletion of stem cells. Cancer is a disease of dys-regulated self renewal. When cancer is caused by genetic defects, stem cells inappropriately activate or hijack the normal self-renewal mechanisms to form a tumor. Each time we identify a new continued on page 2 Photography: Omer Yilmaz Life sciences research capability has become one of the key measures of the excellence of the world’s great universities. To underscore its importance and to create new synergistic ways for life sciences research to be conducted, the U-M created the Life Sciences Institute and My lab focuses on the regulation of self renewal. One of the defining characteristics of stem cells is their ability to divide to make more stem cells, and this property is what underlies their ability to make massive numbers of cells of interest. How a stem cell divides throughout life to make more stem cells is a fundamental question in cell biology. You have blood forming stem cells in your bone marrow that make new blood cells throughout life, in part by dividing to make more stem cells and perpetuating themselves. Benchmarking continued from page 1 The Power of Stem Cell Biology at LSI Photography: Peter Smith Understanding how, when and why stem cells choose their fate involves the most fundamental questions in genetics, cell biology, physiology, developmental biology, engineering and many other disciplines. It seems that almost every day there is something in the popular media or scientific press about stem cells. The political, ethical, competitive, commercial and scientific issues are constantly in the news, stirring up controversy, disagreements and uncertainty. With all this attention, you might conclude that our decision in 2005 to become the home of the U-M Center for Stem Cell Biology was a strategic choice to stay on top of trendy science. Nothing could be farther from the truth. The LSI is about harnessing the power of cross-disciplinary interactions. Getting to the source of that power requires more than casual or informative interactions among scientists from different disciplines. It requires deep engagement in the big questions. 2 Early in LSI’s history, we created the Centers for Chemical Genomics and Structural Biology to catalyze collaborations across the boundaries of chemistry, biology, physics and computation. Many scientists across the campus are now engaged under the auspices of these centers, exploring the structure and function of biological systems in ways they could never have done on their own. The Center for Stem Cell Biology offers more opportunities for cross-disciplinary engagements. Of the four faculty members who have already joined the center, each has a unique approach and perspective, and uses a different system to get at these issues. Yukiko Yamashita and Cheng-Yu Lee are exploiting the power of fly genetics to learn about how stem cells decide whether to replicate or turn into neurons or other specialized cells. Sean Morrison and Ivan Malliard use mice as a model system to study how blood forming stem cells respond to signals that instruct them to begin the complex process of blood formation. We expect that the Center for Stem Cell Biology will bring these scientists together with other investigators to spark new ideas, open our investigators to different approaches and use new tools to make important new discoveries, even in fields only remotely connected to stem cells. Of course, we are also keenly motivated by the promise that stem cells hold for understanding and treating disease. As noted elsewhere in this issue, stem cell research is vital for our progress in helping those with diabetes, cancer and neurodegenerative disease. And, it is important to work in all areas of stem cell biology to achieve that progress. Until federal and state policy is enlightened, we and our donors will continue to support work with both adult and embryonic stem cells. In the storm that lately characterizes the field of stem cell research, we are proud to provide a necessary, nurturing, safe haven for this work at U-M. But, it is the promise of stem cell biology for sparking discovery at disciplinary crossroads that makes it the right choice for LSI and has me pumped for the future. — Alan Saltiel, LSI Director Sean Morrison gene we understand something new about normal development — as well as how those mechanisms can go wrong to cause cancer or other diseases. These are hard questions and most of the things researchers try don’t work, but when you give yourself an opportunity to cure somebody, you don’t know up front whether it will work or not. If it works some of the time, then people will be alive who might not be alive otherwise. What are the links you’ve discovered between stems cells and cancer? We learned that cancer cells hijack the mechanisms that normally regulate stem cell self renewal to proliferate out of control. If you try to target these mechanisms, to develop drugs that interfere with these pathways in a cancer cell, these drugs often kill normal stem cells too. One of the tragedies about leukemia is that people often die from the therapy because it is toxic to normal blood-forming stem cells. In an ideal world you’d like to target only those things that kill the cancer cells without harming the normal stem cells. And so we identified an example of this, and also in fact identified a drug that’s already FDA-approved for other purposes that is incredibly effective, at least in mice, at killing leukemic stem cells. We plan to go into clinical trials at the University of Michigan hospital with patients we know we cannot cure with current treatments and testing whether adding Rapamycin to their current therapy would cure them. That will be really amazingly cool! Will you clarify the differences between the stem cells types? Stem cells have different properties at different stages of life. Embryonic stem cells only exist at the earliest stages of embryonic development, when embryos are microscopically small and they have the ability to make every cell type in the body. Fetal stem cells are tissue specific stem cells, which in fact are adult stem cells in fetal tissue. They include fetal blood forming stem cells, fetal skin stem cells, and so on. Amniotic stem cells characterize a population of fetal cells that is not at all well worked out, but those cells are different from embryonic stem cells and at this stage there is no evidence that they have the ability to make every cell type in the body. Umbilical cord blood cells are blood-forming stem cells and have been used to restore the blood-forming system in children after treatment for leukemia. They are useful but they don’t have the capacity to make new brain cells or cell types in other tissues. So is one stem cell better for research than another? There are many different types of stem cells out there and the whole conversation about which stem cell is better, for example, if we should work on adult or embryonic cells, is a political artifact. There is no stem cell biologist out there who thinks in those terms. All of the stem cell biologists that I know believe that work should continue on all types of stem cells because we can’t predict at this stage which ones are going to be the most useful for which diseases. We want to be able to pursue all the options to use all the weapons at our disposal. I’d like to emphasize that people shouldn’t buy into this political framing of adult versus embryonic. All the scientists and physicians believe that we should be pursuing both types of stem cell research because it’s not a question of good and bad. All types of stem cells have different properties, unique advantages and disadvantages, and there are some things that we can do with adult stem cells that we can’t do with embryonic and vice versa. All scientists that I know want to pursue research with both. How did this research become framed as controversial? Journalists often come up to me and say that embryonic stem cells is really a controversial area. In fact among people that really understand the work, there is very little controversy. Among the experts in the area, including physicians, ethicists and scientists, there is broad agreement that first, the work should be done, and second, they agree about the guidelines that should be pursued to do the work ethically. This is most clearly illustrated by the fact that the head of the National Institutes of Health broke from the President and testified before Congress that embryonic stem cell research was critical to the future of medicine in the United States. He said that current federal restrictions put in place by the Bush administration where slowing the pace of that research and hampering the ability of the NIH to fund the most important science. Then why is there opposition to this research? There are political groups who frame the story in a different way. They try to create fear in the minds of the general public about science fiction scenarios like creating Frankensteins and other horrors and of course none of that is true. In-vitro fertilization is a mainstream fertility practice that most people in our society have no moral problem with. I think that stem cell research will be much the same in 20 years after it becomes possible to treat a disease with the products of embryonic stem cell research. The public also hears about the adoption option, is that viable? There are more then enough embryos thrown away each year to put all the embryos up for adoption that anyone would ever want and to make all the embryonic stem cell lines that anyone would ever want to make. The fact is that for every embryo that is actually put up for adoption, there are 100 more that are thrown away. The reality is that almost nobody out there wants to adopt other people’s embryos, furthermore, most people who have leftover embryos from in-vitro fertilization are not comfortable with the idea of putting their embryos up for adoption. A recent study showed that people with frozen embryos were more comfortable with the idea of donating their embryos for use in medical research then they were with the idea of putting their embryos up for adoption. What is the biggest myth about stem cells? The single biggest myth related to embryonic stem cells is the idea that opponents of this work try to create, which is that scientists want to divert embryos from reproductive purposes for use in medical research. That’s not true. The existing federal and state restrictions are defended because “human embryos are special and need protection under the law,” but in fact those restrictions don’t protect a single embryo from destruction. The embryos that will be used for research and are currently being used in other states, are already being thrown away and can’t be used for fertility purposes. The principle is not to choose between having a baby or making an embryonic stem cell line, the real choice is between throwing away embryos that can’t be used for fertility treatment versus using them in medical research that might one day help patients. 3 LSI Insights The Ethics in Favor of Stem Cell Research My husband and I were always meant to be the parents of our daughters, Rosemary and Rita Mei. But in the course of becoming a family through adoption, we — like 10% of couples in the U.S. — underwent treatment for infertility. For most couples that undergo in vitro fertilization (IVF), one outcome is that more embryos are created than are used in the treatment. Yet, under Michigan law, those 8-celled clusters cannot be used in lifesaving medical research. It is lawful to freeze them in perpetuity or to destroy them but not to put them to good use in developing treatments for diseases like diabetes, cancer and Alzheimer’s disease. 4 This waste is unethical and must be stopped. Each day in the laboratories where I work, scientists are making breathtaking advances in our understanding of life and in how to treat disease. Embryonic stem cells are a key tool for understanding and treating the underlying causes of disease. While it is true that adult stem cells are also important, embryonic stem cells are the only cells that can develop into any other type of cell — and embryos are the only source for new stem cell lines. Existing stem cell lines are limited in number and genetic diversity and cannot be used to study inherited human diseases. Why should we fight for human health with one hand tied behind our back when there are embryos available that will otherwise be frozen forever or discarded? We can set and enforce appropriate limits on the use of leftover embryos in research. Scientists who are permitted to do this work have already voluntarily adopted rigorous guidelines. These include only using embryos slated for disposal and making sure that couples give a voluntary, informed consent to donating their embryos for research. The rules prohibit the creation of embryos solely for research purposes and paying for embryos used in research. And, of course, the rules prohibit reproductive cloning. Some opponents of stem cell research argue that frozen embryos should be preserved for use by other couples desiring a family. If there is a way to help others by the voluntary donation of leftover embryos, I would be in favor of it. But, there are so many embryos in storage — 400,000 in the U.S. alone according to a 2003 RAND report — that we do not have to choose between these options. The best estimate of the number of couples that would choose to implant a leftover embryo is tiny in comparison to the embryos available for research. In fact, in a survey announced in July of this year, only 22% of surveyed couples with frozen embryos would be willing to donate those embryos to other couples while 60% would be willing to provide those embryos for stem cell research. As native Michigander, I am concerned about the economic outlook in our state and I wonder if my daughters will be able to thrive here as adults. Will our community continue to be the special place I grew up in if we cannot build a new base for our economy? When it comes to stem cell research, our laws are the most restrictive in the nation, tied for last place with South Dakota. Scientists in Michigan would go to jail for doing research that California, New Jersey, Maryland, Illinois, and other states are supporting with taxpayer dollars. If there was ever a time to clear away the barriers to economic and scientific progress, this is it. It is time to change our laws and stop the senseless waste of embryos that can be used today — in our state — to make life better for many other individuals and families. — Liz Barry, Managing Director, Life Sciences Institute A similar version of this essay appeared in the Detroit Free Press in May 2007 Background image: Metaphase spread superimposed upon a section through the liver of a Pten-deleted mouse with leukemia. Hematopoietic stem cells and leukemia initiating cells differ in their dependence upon Pten. This can be therapeutically exploited to deplete leukemiainitiating cells without harming normal stem cells. Yilmaz et al Nature. 2006 May 25 under the scope Curiouser and Curiouser By Danielle LaVaque-Manty Though she grew up catching bugs and always knew she wanted to be a biologist, there was a time when Yukiko Yamashita considered leaving science. The first woman Ph.D. student in the lab where she earned her Ph.D., she found herself unable to enjoy her doctoral adviser’s approach to doing science, which involved long hours in a tense environment, seven days per week, doing endless numbers of experiments on yeast genetics just to see which ones would yield results. This model, Yamashita says, “left little room for curiosity.” Fortunately, her postdoctoral experience in Margaret Fuller’s lab at Stanford was very different. “She let me have time to think.” Fuller talked through Yamashita’s ideas with her—“sharing the fun”—but allowed her to learn on her own, and soon her motivation and love of science returned. This is the approach Yamashita plans to take with students in her own lab. “I don’t think you can really teach another person science,” she says. “But you can provide guidance and help them figure out what it is that they want to do.” At the moment, she employs a technician and two undergraduates, and she looks forward to having graduate students and postdocs to discuss questions with as well. “My biggest motivation is to understand how cells control their fates, and to share the experience with others.” differently, dividing asymmetrically to produce differentiated cells. A stem cell can either differentiate—producing a skin cell, for example—or it can selfrenew. “It’s an either/or choice for each cell.” In Japan, Yamashita says, there are fewer women scientists than in the U.S.—although their numbers are growing—and it is not unusual for women, even in her generation, to leave their jobs when they get married, or to retain their positions but become less visible over time as they try to accommodate their careers to the demands of their personal lives and household work. Yamashita credits her mother, a pharmacologist, with giving her the idea that women could keep their jobs for life and not become financially dependent on their husbands. She thinks she gets her curiosity about how things work from her father, “an amateur physicist” and admirer of Albert Einstein. He worked in Japan’s patent office for many years and holds patents on several inventions of his own, including a capless, retractable highlighting pen. Producing too many stem cells can lead to the growth of tumors, while producing too few can lead an organism to run out of other necessities, like new skin cells. Yamashita sees no immediate medical applications to her research (“Because I work on fruit flies!”) but notes that understanding how cellular mechanisms work may eventually aid other researchers in finding ways to intervene in processes that lead to cancer. Trained as a cell biologist, Yamashita has a unique approach to studying stem cells in multi-cellular organisms, observing the behavior of individual cells as they divide rather than studying them en masse. Margaret Fuller had been studying stem cells for years by the time Yamashita arrived at Stanford, but nobody in her lab had used a cell biological approach. “I see stem cells as being cells first, before they are stem cells,” Yamashita says, pointing out that they share ninety-nine percent of their characteristics with other cells. She wants to figure out what accounts for the one percent difference. Using drosophila, in which stem cells are easy to isolate, she discovered that although stem cells have the same components as other cells, they behave Yamashita’s husband, Kentaro Nabeshima, is a cell biologist as well. The two were postdocs at Stanford together, though in different labs, and were hired by the University of Michigan at the same time, Nabeshima in the Department of Cell and Developmental Biology (CDB), and Yamashita in both CDB and the Life Sciences Institute and the Center for Stem Cell Biology. They enjoy living in Ann Arbor, which offers a good environment in which to raise their twoand-a-half year-old daughter. The LSI, Yamashita says, has been incredibly supportive in helping her make the transition from Stanford to Michigan, even helping her hire a technician to set up her lab before she arrived in January, 2007, so she was able to start work on her experiments right away. “I’ve never heard of anyone anywhere having their lab up and running within two weeks,” she says, noting that making a transition from one university to another can often cause months of delay in one’s research. “That was amazing.” 5 continued from page 1 housed it in a remarkable new facility. LSI symbolizes the University’s commitment to remaining one of the premier science universities in the 21st Century. While “life sciences research” is a broad, multifaceted field, stem cell research has been in the center of the public’s attention and has come to be regarded popularly as the leading edge. This perception is fueled by the promise that stem cell research can lead to curing some of mankind’s greatest scourges. So stem research has enormous symbolic value to 6 the University and to the scientific community. If U-M is to be regarded as a place that really supports scientific inquiry, it needs to have an outstanding stem cell research program. Fortunately, we have attracted Sean Morrison, truly one of the “best and the brightest” to lead the effort. Dr. Morrison is internationally recognized for his individual research and for assembling a superb team at the Center for Stem Cell Biology. He, and they, have made Michigan writ large on the scientific map. But the obstacles are great, and much needs to be done. While attending my 40th Harvard College reunion recently, I heard a prominent Harvard stem cell researcher’s presentation, during which he spoke of how he pitied “poor Sean Morrison” for having to do his work in Michigan. I am not kidding. That is what the man said to the 300 of us gathered for his talk. The Harvard researcher, of course, was alluding to the State of Michigan’s law making it a crime to damage an embryo, a law passed in the 1970’s when no one had conceived of stem cell research. The perception is that Michigan is a backwater for serious science, a place with a medieval mentality. At the same time, we have an administration in Washington that has made meaningful embryonic stem cell research virtually impossible to conduct — unless it is privately funded. So the challenges for us, who love the University of Michigan, are real. Last fall a group of us got together and helped raise money to support research using an imported “non-presidential” line of stem cells. The need is ongoing, but we are heartened by the enthusiastic support this effort is receiving. Working with LSI Director Alan Saltiel, we will raise the necessary money. But we also need to change the politics in Lansing if we are really going to be able to retain and recruit the best and the brightest at Michigan. The stakes are high. As a public university in a state with highly publicized economic troubles, it already is difficult enough to maintain the greatness of our University. We need to change the climate for stem cell research if U-M is going to continue to be the center of excellence that we know today for our children and grandchildren. A double helix of dividing hematopoietic stem cells Photography: Mark Kiel Discoveries: f r o m t h e C e n t e r f o r S t e m C e ll B i olo g y Widely held ideas about stem cells disputed LSI team identifies gene that regulates blood-forming fetal stem cells of the paper; Morrison and U-M’s Thomas Saunders are co-authors. How do adult stem cells protect themselves from accumulating genetic mutations that can lead to cancer? In the rancorous public debate over federal research funding, stem cells are generally assigned to one of two categories: embryonic or adult. But that’s a false dichotomy and an oversimplification. A new study led by LSI’s Sean Morrison adds to mounting evidence that stem cells in the developing fetus are distinct from both embryonic and adult stem cells. “Identification of Sox17 could also facilitate efforts to form blood-forming stem cells from human embryonic stem cells, a goal that could enhance bone marrow transplantation,” Kim said. For more than three decades, many scientists have argued that the “immortal strand hypothesis” — which states that adult stem cells segregate their DNA in a non-random manner during cell division — explains it. And several recent reports have presented evidence backing the idea. But in August 29 issue of the journal Nature, lead author Mark Kiel, Sean Morrison and their colleagues dealt a mortal blow to the immortal strand, at least as far as blood-forming stem cells are concerned. They labeled DNA in blood-forming mouse stem cells and painstakingly tracked its movement through a series of cell divisions. In the end, they found no evidence that the cells use the immortal-strand mechanism to minimize potentially harmful genetic mutations. “This immortal strand idea has been floating around for a long time without being tested in stem cells that could be definitively identified. This paper demonstrates that it is not a general property of all stem cells,” said Morrison, director of the Center for Stem Cell Biology. It remains possible that stem cells in other tissues use this process. “We’ve been able to show that this is not a mechanism by which blood-forming stem cells reduce their risk of turning into cancer and, presumably, we should be looking elsewhere to understand what those mechanisms really are,” he said. Stem cells generate all of the tissues in the developing human body, and later in life provide replacement cells when adult tissues are damaged or wear out. In the last several years, stem cell researchers have realized that fetal stem cells comprise a separate class. They recognized, for example, that fetal bloodforming stem cells in umbilical cord blood behave differently than adult blood-forming stem cells after transplantation into patients. A team led by Sean Morrison has identified the first known gene, Sox17, required for the maintenance of blood-forming stem cells in fetal mice, but not in adult mice. The discovery provides a critical insight into the mechanisms that distinguish fetal blood-forming stem cells from their adult counterparts. The findings could also lead to a deeper understanding of diseases such as childhood leukemias. Childhood leukemias are cancers that afflict blood-forming cells and hijack normal stem cell self-renewal mechanisms. “One of the next questions in our cross hairs is whether Sox17 gets inappropriately activated in certain childhood leukemias—and that’s an idea that nobody had in their mind before this work,” Morrison said. “If it’s true, it’ll give us a new target for cancer.” The Sox17 results appeared online July 26, 2007 in the journal Cell. U-M’s Injune Kim is lead author The Sox 17 study is part of a larger, ongoing U-M effort to understand how stem cells are regulated at different stages of life. Last September, Morrison’s team reported that old stem cells don’t simply wear out; a gene called Ink4a actively shuts them down. “Each time we identify one of these genes, we get a new insight into what stem cells really are, what regulates their identity and how their age-specific functions work,” Morrison said. That information could lead to new treatments for degenerative diseases. — Jim Erickson, U-M News and Information Services A cluster of leukemia-forming cells from a mouse lacking the Pten gene. Blood-forming stem cells and leukemia-initiating cells differ in their dependence on Pten, and this difference can be used to selectively kill the cancerous cells without harming normal stem cells. (Photo by Omer Yilmaz, U-M Center for Stem Cell Biology. 7 What’s new with stem cells? Recently, stem cell researchers have made revolutionary discoveries that have made headlines around the world. While it was previously thought that differentiated cells were destined to remain confined to one pathway or somatic cell type, we now know that by inserting only a few select genes into a cell taken from a simple skin biopsy, the cell can effectively reprogram itself to regain pluripotency, Although attempts to replicate the experiment using human cells have not been successful, the findings from experiments involving the reprogramming of mouse fibroblast cells represent exciting possibilities in the microscopic realm of stem cell research. Sean Morrison, director of the Center for Stem Cell Biology, views the results of these experiments as a promising forecast of the developments yet to unfold. Photography: Injune Kim “What’s exciting about stem cell research is you don’t know what’s going to come around the corner,” he said. Green fluorescence protein in the inner cell mass of an embryonic day 3.5 Sox17 GFP/+ blastocyst in mouse meaning they can revert to become any cell in the body. 8 Three labs have been successful at reprogramming the cellular circuitry of differentiated skin cells of mice, including the Kyoto Univeristy lab of Shinya Yamanaka (who is moving to California), the Harvard Medical School lab of Konrad Hochedlinger and Rudolf Jaenisch’s lab at the Whitehead Institute in Cambridge, MA as reported in Nature magazine. This is especially applicable in the case of Woo Suk Hwang, a Korean stem cell researcher who claimed to have discovered the ability to derive embryonic stem cells through nuclear transfer (therapeutic cloning) but was later found to have falsified research and was ultimately discredited. After a team of researchers in Boston reviewed Hwang’s work, they found that while it was not what he originally claimed, the work did produce the first stem cells found to be produced from an unfertilized egg by parthenogenesis, a process by which an unfertilized egg can be tricked into starting to divide. Findings like those from Yamanaka’s lab, and even Hwang’s roundabout experiment, have revolutionary implications for the ethics of stem cell research, and some have said that new procedures such as deriving stem cells from a skin cell or an unfertil- ized egg have the potential to do away with the need to harvest pluripotent stem cells from human embryos. U-M’s Morrison says it is important for stem cell researchers to be prudent about trying to predict which applications work best. “We have to continue doing work on embryonic stem cells,” he said. Morrison is optimistic about replicating the experiment using human skin cells, and thinks the lack of success at this point may indicate that a different combination of genes is responsible for resetting human skin cells to the pluripotent state. Recently, Morrison has been working to identify genes required to maintain fetal hematopoietic, or blood-forming stem cells. Along with LSI Research Fellow Injune Kim, Morrison discovered that stem cells in a developing fetus have unique properties, and can’t be grouped into a category with either adult or embryonic stem cells. The team was the first to identify that Sox17 is a critical gene in the regulation of fetal mouse stem cells, but has little or no regulatory effect on adult stem cells. The findings of his lab’s research were published in late July in Cell, a key scientific journal. Ongoing controversy about the way stem cells are obtained typically receives the most media attention, and Congress continues its battle over the ethics of using the discarded remnants of In-Vitro Fertilization procedures to progress embryonic stem cell research. Although some debates are focused entirely on where researchers obtain stem cells, “it’s only a small piece of the equation,” according to Dr. Morrison. For him, a large focus is figuring out how he can use stem cells, whether in transplantation or simply observing them outside the body to understand their mechanisms, or screening for new drugs. For example, he has already begun thinking about how his discovery with fetal blood-forming stem cells can be applied to diseases like childhood Leukemia. As the mysteries of stem cells begin to unwind, many theoretical solutions have been predicted in the lab. “The actual work on how to treat a disease still needs to be done,” Morrison says. When it comes to Juvenile Diabetes, a disease that affects about one in every 400 to 600 children according to the National Diabetes Information Clearinghouse, stem cell researchers have been able to successfully generate fully differentiated normal insulin-secreting cells. But many challenges remain before this information can be translated into a cure. Researchers must now figure out how to transplant new functioning insulin-secreting cells into a patient and avoid the wrath of an immune system that has detected a foreign intruder. Morrison said he hopes there will be areas such as this that will “lurch forward unexpectedly because of a few key discoveries,” such as was the case in Yamanaka’s most recent discovery. “It’s one of those areas that is moving much faster than people thought it would,” he said. Recently, Morrison has been finalizing consent documents to obtain stem cells with genetic defects that cause neurodegenerative disease, but the process has been difficult because of Michigan’s restrictive state laws restricting embryonic stem cell research. In 2001, Bush’s presidential veto left only a few viable lines of embryonic stem cells in the National Institutes of Health stem cell registry available for federal funding. These lines are extremely limited in genetic diversity and none have the right genetic background to model neurodegenerative diseases. foundation, he can apply to obtain embryonic stem cells that were created in other states like California that are not approved for federal funding. Although it may be a time-consuming process, he does not expect resistance to his requests. Nonetheless, the need to depend on scientists in California is one important reason why the state restrictions on embryonic stem cell research that are currently in place in Michigan put Michigan researchers at a great disadvantage relative to scientists in other states, and slow progress in this area within the state. — Arikia Millikan, senior majoring in Psychology in at U-M and Michigan Daily reporter Learn more about stem cells: www.lifesciences.umich.edu/research/ featured/tutorial.html But because Morrison’s lab is funded largely by a private 9 Photography: Injune Kim For Morrison and his associates, a deep exploration into the cellular culprits of neurodegenerative diseases is one area that they plan to vigorously investigate, in hopes that they will experience such a leap in progress. Morrison has been working in this area for years and collaborates with Sue O’Shea to figure out how to coax stem cells into becoming components of the nervous system, the region of the body that is devastated by diseases like Parkinson’s, Huntington’s, and Alzheimer’s. These diseases affect millions of individuals around the world, but most are currently untreatable. investigations The Function for Survival The tight regulation of glucose levels is necessary for the proper functioning and survival of all tissues and organs. While glucose deprivation can cause cellular death, chronic elevated levels can lead to tissue damage or dysfunction. Glycogen metabolism represents a key step in the storage of excess glucose. Not surprisingly, the inability to properly store glycogen is a characteristic found in insulin resistance/ diabetes, as well as several genetic disorders that affect hepatic, neuromuscular, or neurological function. I have discovered that the G1448R genetic variant is unable to bind to glycogen, and displays decreased stability that is rescued by proteasomal inhibition. AGL G1448R is more highly ubiquitinated than its wildtype counterpart, and forms aggresomes upon proteasome impairment. During the course of these studies, I identified the E3 ubiquitin ligase Malin as a novel interactor with AGL. Interestingly, Malin is known to be mutated in Lafora disease, an autosomal recessive disorder clinically characterized by the accumulation of polyglucosan bodies resembling poorly branched glycogen. My studies have led me to propose a model regarding the regulation of AGL. When glycogen is present, AGL localizes to it to carry out its function to help maintain its proper branching structure. During the breakdown of glycogen, AGL is released into the nucleus where Malin interacts with it and promotes its ubiquitination, and subsequent degradation. In Lafora disease, the absence of Malin may lead to decreased AGL ubiquitination and thus, an inappropriate increase in the levels of the protein. The subcellular localization of a mutant AGL protein that occurs in Cori’s disease. The mutant concentrates into an aggresome (green) that is caged by a microtuble network (red). 10 One of my research goals is to understand the molecular mechanisms that underlie Glycogen Storage Disorders (GSDs). Cori’s disease (GSD Type III) is characterized by a deficiency in the glycogen debranching enzyme, amylo-1,6-glucosidase, 4-alphaglucanotransferase (AGL). This enzyme is thought to be important in maintaining the proper branching structure of glycogen, as well as assisting in its breakdown into glucose. Most AGL mutations identified to date lead to premature truncation and loss of activity. However, one missense variant, G1448R, is located within the putative glycogen-binding domain. In summary, my studies indicate that binding to glycogen crucially regulates the stability of AGL, and further that its ubiquitination may play an important role in the pathophysiology of both Lafora and Cori’s disease. —Alan Cheng, PhD, Saltiel lab, 2007 Physiological Notch signaling promotes gliogenesis in the developing peripheral and central nervous systems Constitutive activation of the Notch pathway can promote gliogenesis by peripheral (PNS) and central (CNS) nervous system progenitors. This raises the question of whether physiological Notch signaling regulates gliogenesis in vivo. To test this we conditionally deleted Rbpsuh from mouse PNS or CNS progenitors using Wnt-1-Cre or Nestin-Cre. Rbpsuh encodes a DNAbinding protein (RBP/J) that is required for canonical signaling by all Notch receptors. In most regions of the developing PNS and spinal cord Rbpsuh deletion caused only mild defects in neurogenesis but severe defects in gliogenesis. This was usually caused by defects in glial specification or differentiation, not premature depletion of neural progenitors, because we were able to culture undifferentiated progenitors from the PNS and spinal cord despite their failure to form glia in vivo. In spinal cord progenitors, Rbpsuh was required to maintain Sox9 expression during gliogenesis, demonstrating that Notch signaling promotes the expression of a glial specification gene. These results demonstrate that physiological Notch signaling is required for gliogenesis in vivo, independent of the role of Notch in the maintenance of undifferentiated neural progenitors. —Merritt Taylor, PhD, Morrison Lab, 2007, now Assistant Professor at Grand Valley State University. Sox17: unique transcription factor for fetal and neonatal HSCs Fetal hematopoietic stem cells (HSCs) have properties distinct from adult HSCs. Fetal HSCs express specific markers which are not expressed in adult HSCs. Fetal HSCs proliferate rapidly while adult HSCs are quiescent. In an attempt to find out transcription factors important for fetal properties of HSCs, we discovered that Sox17 is specifically expressed in fetal HSCs, not in adult HSCs. By generating and analyzing Sox17 targeted mice, we revealed that Sox17 expression within hematopoietic system is restricted to fetal and neonatal HSCs, not adult HSCs and that the deletion of Sox17 induces the loss of HSCs during development or in neonatal period, not in mature adulthood. When the expression of Sox17 declines gradually after birth, HSCs expressing Sox17 hold fetal properties phenotypically and functionally but HSCs which don’t express Sox17 showed adult properties. These results indicate that Sox17 is important transcription factors for fetal and neonatal HSCs. —Injune Kim, PhD, Morrison lab, 2007 Structure basis of Vps4 and Vta1 function in the multi-vesicular body sorting pathway The Multi-Vesicular Body (MVB) pathway functions in multiple cellular processes including cell surface receptor downregulation and viral budding from host cells. Proper function of the MVB pathway requires reversible membrane association of the ESCRTs, a process catalyzed by AAA-protein (ATPase Associated with various cellular Activities) Vps4. Together with its regulator Vta1 protein, Vps4 utilizes the energy from ATP hydrolysis to promote the dissociation of ESCRT complexes from the endosome membrane. To understand the function of Vps4 in a molecular level and gain important insights into the MVB pathway and retrovirus budding, we have performed structural and functional studies on Vps4 and its regulator Vta1. We have determined the crystal structure of S. cerevisiae Vps4 in both the nucleotide-free form and the ADP-bound form, in which Vps4 molecule displays different conformation. The monomer structure of Vps4 contains unique features and the molecular organization of Vps4 in the crystal lattice reveals the potential for Vps4 to form a hexameric ring-like assembly. We also performed biochemical studies to examine the oligomerization status of Vps4 in the absence of ATP, and our data suggest that Vps4 is most likely a monomer in contrast to the reported dimer at its inactive state. At the same time, we have examined the interaction between Vps4 and its regulator Vta1. We have mapped their interaction regions and subsequently determined the crystal structure of the Vps4-binding domain of Vta1. The structure demonstrates that the Vps4-binding domain of Vta1 forms a tight dimer with an extensive hydrophobic dimer interface. Mutations in this interface disrupted the dimer formation of the full-length protein. Interestingly, the dimer is also required for the interaction with Vps4, since the dimer defective mutant also does not bind to Vps4. Yeast cells harboring these mutants have defect in the MVB pathway, displaying ‘class E Vps phenotype’. Dimerization and DNA-Binding Properties of the Transcription Factor ΔFosB The transcription factor, FosB, a splice isoform of fosB, accumulates in rodents in a brainregion-specific manner in response to chronic administration of drugs of abuse, stress, certain antipsychotic or antidepressant medications, electroconvulsive seizures, and certain lesions. Increasing evidence supports a functional role of such FosB induction in animal models of several psychiatric and neurologic disorders. Fos family proteins, including FosB, are known to heterodimerize with Jun family proteins to create active AP-1 transcription- factor complexes, which bind to DNA specifically at AP-1 consensus sites. We show here, using a range of biochemical and biophysical means, that recombinant, purified FosB forms homodimers as well, at concentrations less than 500 nM, and that these homodimers specifically bind to DNA oligonucleotides containing AP-1 consensus sequences in the absence of any Jun partner. Our results suggest that, as FosB accumulates to abnormally elevated protein levels in highly specific regions of the brain in response to chronic stimulation, functional ho- Taken together, our data suggest that Vps4 functions in an ATP-dependent monomerdodecamer transition cycle, while Vta1 acts as an assembly factor that links two Vps4 hexameric ring together at its active state. The results we obtained from these studies have the potential for providing novel insights into human disease and may also lead to new therapeutic strategies. —Junyu Xiao, PhD Student, Zhaohui Xu lab, 2007 modimers of FosB are formed with the potential to uniquely regulate patterns of gene expression and thereby contribute to the complex processes of neural and behavioral adaptation. —Gabby Rudenko, PhD, 2007 The dimerization properties of DeltaFosB were probed with analytical ultracentrifugation. The experimental data (dots) in the top half of the figure fit very well with a dimeric model but very poorly with a monomeric model (model predictions in solid lines). Our results shown that DeltaFosB in solution can form dimers, even at low protein concentrations, suggesting that in cells deltaFosB upon accumulation can dimerize as well, forming an active transcription factor. 11 currents LSI Symposia & Events LSI Faculty Win Exceptional Honors Weizmann Institute/LSI Research Partnership was held in April. LSI hosted 10 scientists from our sister institute in Rehovot, Israel for three days of scientific exchange which included an all-day symposium and individual meeting with potential U-M collaborators. Over 100 faculty and students joined the Weizmann delegation for an interactive lunch in the LSI lobby. In May David Ginsburg was elected a Member of National Academy of Sciences. Election to the Academy is considered one of the highest honors bestowed upon scientists across all scientific disciplines in recognition of distinguished and continuing achievements in original research. LSI Professor, Rowena Matthews is also a member. The Michigan Symposium on Genomic Biology was held April 16 in the Biomedical Sciences Research Building Auditorium featuring talks by eight renowned researchers from around the world. The symposium was organized and hosted by LSI faculty Anuj Kumar. In May, LSI held its sixth annual scientific symposium was “Frontiers in Stem Cell Biology.” A roster of world-leaders in stem cell biology presented their cuttingedge research with plenty of time for interaction with UM researchers and students. Harvard’s Dr. Stuart Orkin gave the Mary Sue and Kenneth Coleman Life Sciences Lecture entitled “Control of stem cells.” Xian-Zhong Shawn Xu, was named U-M’s only Pew Scholar in June. The Pew names only 20 awards to America’s most promising scholars. The Pew program invests in early to mid-career scientists, seeks to expand foundation of biomedical knowledge & advance scientific frontiers. As a Pew Scholar, each scientist will receive a $240,000 award over four years to help support his or her research, as well as gain inclusion into a unique community of scientists that encourages collaboration and exchange of ideas. 12 Awards Andrea Baines in the Ginsburg Lab will be awarded the Rackham Predoctoral Fellowship for the upcoming year. Christopher G. Evans who is a 2nd year graduate student in the Gestwicki group and the Chemical Biology PhD Program was awarded a Cellular Biotechnology Training Program (CBTP) Fellowship. Huan Tang (Mike) Li in the GarneauTsodikova lab won a spot in the Cellular Biotechnology Training Program. David Ginsburg received the Distinguished Career Award as part of the “13th Biennial Awards for Contributions to Hemostasis” at the XXI Congress of the International Society on Thrombosis and Hemostasis in Geneva Switzerland, July, 2007. Structural Enzymology: A Symposium Honoring Rowena E. Matthews, was held in May and is traditional for a faculty member who will be retiring. The two day celebration recognized Rowena’s contributions to science, particularly in the field of Biological Chemistry, and brought together scientists from all over the country. It was cosponsored with University of Michigan Department of Biological Chemistry, Biophysics Research Division, and the Life Sciences Institute. The LS-CAT Sector 21 Dedication Ceremony in May opened the beamline at the Argonne National laboratory outside Chicago. Spearheaded by the late Martha Ludwig, the new beamline is a collaboration between LSI and researchers from the University of Michigan, and many other institutions including Michigan State Uni- versity, Wayne State University, Van Andel Institute, Northwestern University, the University of Illinois, University of Wisconsin and Vanderbilt University. LS-CAT or the Life Sciences Collaborative Access Team is a consortium of academic and research institutions engaged in cutting-edge structural research with X-radiation to solve 3-D structures. Gabby Rudenko, Janet Smith, Jeanne Stuckey, John Tesmer, and Zhaohui Xu of LSI and the Center for Structural Biology are the primary users of the facility in the LSI. a transfer student to Baylor College of Medicine in Houston, Texas and will be starting clinical rotations in July toward completion of her MD. Chung-Han Lee from the Kun-Liang Guan lab defended June 4, 2007. “Glucose Starvation Induces Apoptosis of TSC-/- cells in a p53-dependent Manner.” Brian A. Moore from Zhaohui Xu’s lab. “Structures of Exocyst subunit Exo70 from Yeast and Mouse.” Dr. Moore will be a postdoc at Harvard with Allen Steere. Angela Fleischhaker from Rowena Matthews’ Lab defended in May. “Governing conformation in cobalamin-dependent methionine synthase: Probing the roles of the axial cobalt ligands.” Of Note: Janet Smith displays a diffraction pattern at Argonne National Laboratory, home of LS-CAT PhD Defenses Ju Huang from Dan Klionsky’s lab defended June 4. “Studies of the molecular components of autophagy and the sorting mechanism of the multivesicular body pathway in Saccharomyces cerevisiae.” Ju will be doing a postdoc with Dr. John Brumell at the Hospital for Sick Children in Toronto, Canada. Abigail (Abby) Fahim from the David Ginsburg lab defended her thesis on May 15, 2007. “Directed Evolution and In Vivo Function of Plasminogen Activator Inhibitor-1”. Abby has been accepted as The ISI Web of Knowledge has calculated an impact factor of 6.71 for Autophagy —Daniel Klionsky is Editor-in-Chief. This is a higher factor than some of the journals considered to be competitors including Molecular Microbiology (5.63), Journal of Biological Chemistry (5.81), Journal of Cell Science (6.43), Molecular Biology of theCell (6.56) and Traffic (6.61). Zhouhui Xu and Brian Moore at his defense suggested that the function of TBX15 will have to be carefully explored. “Studies in mice indicate that TBX15 may have widespread functions and may impact multiple tissues such as bone and skeletal development,” he told Medscape. “It will also be interesting to determine whether TBX15 also correlates with markers of insulin resistance.” Jordan Shavit, of the Ginsburg lab M.D., Ph.D., will give a presentation at the XXIst Congress of the ISTH 2007 Meeting in Geneva, Switzerland, July, 2007. “Regulation of Plasma von Willebrand Factor (VWF) by Modifier Genes”. LSI was featured in an article published by the American Diabetes Association regarding “Potential Weight-Regulating Gene Identified” by Emma Hitt excerpted here: A gene called T-box 15 (TBX15) may be involved in regulating body fat amount. Carey Lumeng, MD, PhD, with the University of Michigan Life Sciences Institute, who moderated the session on obesity during which the presentation was made, 13 currents Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS). Crawford GE, Holt IE, Whittle J, Webb BD, Tai D, Davis S, Margulies EH, Chen Y, Bernat JA, Ginsburg D, Zhou D, Luo S, Vasicek TJ, Daly MJ, Wolfsberg TG, Collins FS. Genome Res 16:123-31, 2006. Dauer. Hu PJ, WormBook, ed. The C. elegans Research Community, WormBook, doi/10.1895/wormbook.1.144.1, http:// www.wormbook.org, 2007. Lunch with scientists from the Weizmann Institute in LSI lobby Top discoveries include Selected Publications Yukiko Yamashita’s laboratory published research discussing asymmetrical division of adult stem cells showing that adult stem cells often divide to produce one selfrenewed stem cell and one differentiating cell, thus maintaining both populations. (Science, January 2007) Drug Targets in Mycobacterial Sulfur Metabolism. Bhave D, Muse WB, Carroll KS. Infectious Disorders - Drug Targets 7:140-158, 2007. A team led by Jiandie Lin discovered how metabolic pathways work in concert with the circadian clock to create the predictable daily patterns of energy storage or usage. By creating genetically altered “knockout” mice, they uncovered a new job for an old protein called PGC-1α (alpha), a master regulator of genes that control energy production in the cell. (Nature, May 2007) 14 Jason E. Gestwicki and Daniel J. Klionsky discussed potential therapeutic applications of autophagy recognized to be involved in various developmental processes and various diseases including cancer and neurodegeneration.(Nature Reviews, Drug Discovery, April 2007) Covalent CouN7 enzyme intermediate for acyl group shuttling in aminocoumarin biosynthesis. Balibar CJ, Garneau-Tsodikova S, Walsh CT. Chem Biol. 14: 679-90, 2007. Rescue of Degradation-prone mutants of the FK506-rapamycin binding (FRB) protein with chemical ligands. Stankunas K, Bayle JH, Havranek JJ, Wandless TJ, Baker D, Crabtree GR, Gestwicki JE. Chembiochem 9:1162-9, 2007. Potential therapeutic applications of autophagy. Rubinsztein DC, Gestwicki JE, Murphy LO, Klionsky DJ. Nat Rev Drug Discov 6:304-12, 2007. Fatal hemorrhage in mice lacking gammaglutamyl carboxylase. Zhu A, Sun H, Raymond RM Jr, Furie BC, Furie B, Bronstein M, Kaufman RJ, Westrick R, Ginsburg D. Blood 109:5270-5, 2007. Genetic regulation of plasma von Willebrand factor levels: quantitative trait loci analysis in a mouse model. Lemmerhirt HL, Broman KW, Shavit JA, Ginsburg D. J Thromb Haemost 5:329-35, 2007. Distant conserved sequences flanking endothelial-specific promoters contain tissue-specific DNase-hypersensitive sites and over-represented motifs. Bernat JA, Crawford GE, Ogurtsov AY, Collins FS, Ginsburg D, Kondrashov AS. Hum Mol Genet 15:2098-105, 2006. Metabolic derangement of methionine and folate metabolism in mice deficient in methionine synthase reductase. Elmore CL, Wu X, Leclerc D, Watson ED, Bottiglieri T, Krupenko NI, Krupenko SA, Cross JC, Rozen R, Gravel RA, Matthews RG. Mol Genet Metab 91:85-97, 2007. Global aggregation of newly translated proteins in an Escherichia coli strain deficient of the chaperonin GroEL. Chapman E, Farr GW, Usaite R, Furtak K, Fenton WA, Chaudhuri TK, Hondorp ER, Matthews RG, Wolf SG, Yates JR, Pypaert M, Horwich AL. Proc Natl Acad Sci U S A 103:15800-5, 2006. Genetic diversity and population structure inferred from the partially duplicated genome of domesticated carp, Cyprinus carpio L. David L, Rosenberg NA, Lavi U, Feldman MW, Hillel J. Genet Sel Evol 39:319-40, 2007. Activation of RalA Is Required for InsulinStimulated Glut4 Trafficking to the Plasma Membrane via the Exocyst and the Motor Protein Myo1c. Chen, X.C., Leto,D., Chiang, S.H., Wang, Q. and Saltiel. A. R. (Developmental Cell, September 2007) Background image: Marrow cell nuclei in a section through bone. A hematopoietic stem cell caught in the act of dividing (nuclei in blue, alpha-tubulin in green, beta-actin in red Matthews and Elmore hold their May cover of “Molecular Genetics and Metabolism” The probability distribution under a population divergence model of the number of genetic founding lineages of a population or species. Jakobsson M, Rosenberg NA. Theor Popul Biol 71:502-23, 2007. Dimerization and DNA-Binding Properties of the Transcription Factor DeltaFosB.Helena J. M. M. Jorissen, Paula G. Ulery, Lisa Henry, Sreekrishna Gourneni, Eric J. Nestler, and G. Rudenko. (Biochemistry, April 2007) Gapex-5, a Guanine Nucleotide Exchange Factor for Rab5 that Regulates Glut4 Trafficking in Adipocytes. Lodhi, I.J., Chiang, S-H, Chang, L. Inoue, M., Vollenweider, D., Watson, R.T., Pessin, J.E. and. Saltiel, A.R. (Cell Metabolism 2007) Bone marrow-specific Cap gene deletion protects against high-fat diet-induced insulin resistance. Lesniewski, L.A., S.E. Hosch, J.G. Neels,C. de Luca, M. Pashmforoush, C.N. Lumeng, S.H. Chiang, M. Scadeng, A.R. Saltiel and J.M. Olefsky. (Nature Medicine, April 2007) Photography: Mark Kiel 15 Stem Cell Researcher joins LSI Dr. Ivan Maillard joined the Life Sciences Institute as a Research Assistant Professor July 1. He is also an Assistant Professor Dept. of Internal Medicine, Division of Hematology/Oncology and the fourth faculty member of the U-M Center for Stem Cell Biology. “Ivan was the top young stem cell biologist in the country on the job market last year. We had intense competition from other research universities that were also trying to recruit him,” said Sean Morrison, Director of the U-M Center for Stem Cell Biology. “He has done important work characterizing the mechanisms that regulate the maintenance of blood-forming stem cells in the bone marrow. Beyond this fundamental research, Ivan is also a physician, a hematologist/oncologist. We look forward to tapping his expertise as a physicianscientist to further our goals of translating stem cell discoveries to help patients.” Dr. Maillard earned his MD-PhD program at the Swiss Academy of Medical Sciences, University of Lausanne, Switzerland and worked on the interaction of Mouse Mammary Tumor Virus with the immune system of its host with Heidi Diggelmann, MD. He completed a post-doctoral fellowship with Warren S. Pear at the University of Pennsylvania, where he subsequently was a fellow and physician in Hematology-Oncology. Dr. Maillard joined Morrison, Yukiko Yamashita and Cheng-Yu Lee in the Center. Julia Donovan Darlow, Laurence B. Deitch, Olivia P. Maynard, Rebecca McGowan, Andrea Fischer Newman, Andrew C. Richner, S. Martin Taylor, Katherine E. White, Mary Sue Coleman, ex officio The University of Michigan is an equal opportunity/affirmative action employer. The University of Michigan Health System is committed to Total Quality. Copyright © 2007 The Regents of the University of Michigan, Ann Arbor, Michigan, 48109 MMD 070375 Editor: Robin Stephenson [email protected] Photography: Peter Smith Image on front cover: Hematopoietic progenitor colony from a mouse — Hematopoietic stem cells and leukemia cells differ in dependence upon Pten, and this can be therapeutically exploited to deplete leukemia-initiating cells without harming normal stem cells. Nature. 2006 May 25 (cover image) Life Sciences Institute 210 Washtenaw Ave, Ann Arbor, MI 48109-2216 734-763-1200 www.lsi.umich.edu The Regents of the University of Michigan
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