Glaab, Enrico and Baudot, Anais and Krasnogor, Natalio and Valencia, Alfonso (2010) TopoGSA: network topological gene set analysis. Bioinformatics, 26 (9). pp. 1271-1272. ISSN 1367-4803 Access from the University of Nottingham repository: http://eprints.nottingham.ac.uk/1423/1/topogsa_manuscript_postprint.pdf Copyright and reuse: The Nottingham ePrints service makes this work by researchers of the University of Nottingham available open access under the following conditions. This article is made available under the University of Nottingham End User licence and may be reused according to the conditions of the licence. For more details see: http://eprints.nottingham.ac.uk/end_user_agreement.pdf A note on versions: The version presented here may differ from the published version or from the version of record. If you wish to cite this item you are advised to consult the publisher’s version. Please see the repository url above for details on accessing the published version and note that access may require a subscription. For more information, please contact [email protected] 0121345678 9 19121 187889 7 * . *. ! " $ %& ' ( ) ! + ) , % (" / % 0 1 # 2 34/567')1311!+))-46891%):!;'11567'%!+))-46!8, <3) ')'&-:(&67')-=-6!5+>?!@((!37 5A40B5C0 4DEE6 F73" % G1H77) (1()1( ) )41 67'))(9%'I)/1)GJ)7-771)1%/ -11(7)1%1)%61')1)1)GJ%KL//11) )7-4)1%)%!%'4%)411)):/(1%)41 1)GJ)41)1(1:)/6 '%)1%!167')1(( 671())4%1/JG1'7)4G:%(71%%1%K 5MN96/11:91)4))7OPPGGGK/)%K1)P)7-% C179961K-Q%K))KK'J R ST0BUVWC0SUT \^\jbYe`^_ibi]ibZ\]}bfg\^[^ce_fbi]llbfbZ\gYm~gb\g^labZbgrbnan®Ye~ fbaY`_\bi¯hgn®i^kZ~fbaY`_\bi¯abZbg|n sl\bfgYmc]\\]Za\jb`]g\^l]ibZ\]}bfgp\jb_ee`][_\]^Zc_eg\jbc^Z\^_Z ]Z\bf_[\]^ZZb\k^frgbbceb̀cbZ\_\]^Zgb[\]^Z|p_Zi[^ceY\bg\^e^`^a][_` ef^ebf\]bgl^f\jbbZ\]fbZb\k^fp\jbYe`^_ibiabZb°ef^\b]Zgb\_Zif_Zi^c gb\g^lc_\[jbig]±bgnojb_h_]`_mb̀Zb\k^f\^e^`^a][_`ef^ebf\]bg_fb² ³ojb´tµ¶tt^l_Z^ibrabZb^fef^\b]Z|]g\jb_hbf_abZYcmbf^lbiabg r]Z\bf_[\]^Zg|]Z[]ibZ\\^\j]gZ^ibn ³ojbw·¸vw¸w¹ºut¶»¼µ¸·t½¾¸»t¼u¬Y_Z\]}bg\jbef^m_m]`]\q\j_\\jb Zb]ajm^Yfg^l_Z^ib_fb[^ZZb[\birgbb¿_\\gÀ\f^a_\±r{{||n ³ojbºÁ·¶utºuÂvuÁwt¼µuÁrÃÄ|l^f\k^Z^ibgÅÆ _ZiÅÇ ]Z_Z YZi]fb[\bipYZkb]aj\biZb\k^f]gib}Zbi_g\jbc]Z]cYcZYcmbf^l biabgkj][jj_hb\^mb\f_hbfgbi\^fb_[jÅÇlf^cÅÆn¿bYgb\jbÃÄ _g_[bZ\f_`]\qcb_gYfbp[^ceY\]Za\jb_hbf_abÃÄlf^cb_[jZ^ib^l ]Z\bfbg\\^_``^\jbfZ^ibg]Z\jbZb\k^fn ³ojb¼·´tÈtuÉtt¼¼tººÊËÅÌ^l_Z^ibÅ[_Zmb[_`[Y`_\bilf^c\jb ZYcmbf^lgj^f\bg\e_\jgÍÎÏlf^cZ^ibgÐ\^Ña^]Za\jf^YajŲ ÍÎÏËÅÌ ÊËÅÌÒ Ó r| ÎÕÔÖ×ÎÔÕÏ×ÖÔÕÏØÙ ÍÎÏ ³ojbt»µt¼Út¸u·¶¸t¼u¶vw»uÛcb_gYfbg\jb]ce^f\_Z[b^lZb\k^fZ^ibg mq_eeq̀]Za_[bZ\f_`]\qib}Z]\]^Zp]Zkj][j\jbg[^fb^lb_[j Z^ibfb[]ef^[_`q̀ibebZig^Z\jbg[^fbg^l]\gZb]ajm^Yfgnª^fb efb[]gbq̀p\jb[bZ\f_`]\qg[^fbg_fba]hbZmq\jbbZ\f]bg^l\jbi^c]Z_Z\ b]abZhb[\^f^l\jbZb\k^f_iÜ_[bZ[qc_\f]drgbbÝ^Z_[][jtuvwxryzz| l^f_ib\_]b̀ii]g[Ygg]^Z^l\j]gef^ebf\q|n XYf\jbfc^fbpYgbf~ib}Zbiy§_ZiÞ§fbefbgbZ\_\]^Zg[_Zmbi]ge`_qbi l^fb_[j]Zi]h]iY_`abZb°ef^\b]Z]Z\jbi_\_gb\_Zie`^\\bii_\_e^]Z\g_fb ]Z\bf`]Zbik]\jfbb̀h_Z\bZ\f]bg]Z_Z^Z`]Zb_ZZ^\_\]^Zi_\_m_gbn XYZ[\]^Z_`abZ^c][bdebf]cbZ\gef^h]ibfbgb_f[jbfgk]\j_kb_`\j ^l]Zl^fc_\]^Zib`]Zb_\]ZaabZbgb\g^lm]^`^a][_`]Z\bfbg\no^ ]Z\bfefb\\jbgb`]g\g^labZbgp[^cc^Zg\beg]Z_lYZ[\]^Z_`abZb gb\_Z_q̀g]g]Z[Ỳib\jbgb_f[jl^fbZf][jcbZ\e_\\bfZgrl^f_fbh]bkp gbbsm_\_Zab`^tuvwxryzz{||pbnan\^]ibZ\]lqg]aZ]}[_Z\g]aZ_``]Za e_\jk_qg^fef^\b]Zi^c_]Zgp_Zi\bd\~c]Z]Za^l\jb`]\bf_\Yfb rgbbfbh]bkmqf_``]Zabftuvwxryzz||nsZ^\jbf_eef^_[jl^f\jb lYZ[\]^Z_`]Z\bfefb\_\]^Z^labZbgb\g]g\jb_Z_q̀g]g^lc^b̀[Y`_f ]Z\bf_[\]^Zg]Zkj][j\jbabZbg^f\jb]f[^ffbge^Zi]Zaef^\b]Zg_fb ]Zh^h̀bip]Ze_f\][Y`_fef^\b]Z~ef^\b]Z]Z\bf_[\]^ZgnZ\j]g[^Z\bd\p g^cbbd]g\]Zam]^]Zl^fc_\][g\^^g̀_f̀b_iq_``^kYgbfg\^c_eabZbg ^Z\^Zb\k^fg^l]Z\bf_[\]Za^flYZ[\]^Z_`q̀_gg^[]_\bic^b̀[Yb̀g\^ ]ibZ\]lqfb`_\biabZbg_Zief^\b]ZgrZb`tuvwxpyzzz bZggbZtuvwxp yzz|n^kbhbfp\^\jbmbg\^l\jb_Y\j^fgZ^kb̀iabpg^l_f\jbgb \^^g̀i^Z^\\_b]Z\^_[[^YZ\\^e^`^a][_`ef^ebf\]bg]Z]Z\bf_[\]^Z Zb\k^fg\^_Z_q̀gb_Zi[^ce_fbabZbgb\gn Z\j]ge_ebfkb]Z\f^iY[bo^e^sro^e^`^aq~m_gbibZbb\ sZ_q̀g]g|p_kbm~\^^`\^h]gY_`]gb_Zi[^ce_fbZb\k^f\^e^`^a][_` ß࣡ ᢠ¤ ef^ebf\]bg^labZb^fef^\b]Zgb\gc_eebi^Z\^]Z\bf_[\]^ZZb\k^fgn ojb_Z_q̀g]g^lZb\k^f\^e^`^a][_`ef^ebf\]bg^l^Zq̀_g]Zab̀abZb°ef^\b]Z UBU 5TV0UV4 ¡¢£¤¥£¡£¡ sZ_Z_q̀g]gmba]Zgk]\j\jbYe`^_i^l_`]g\^labZb^fef^\b]Z]ibZ\]}bfg r¦Zgbcm`§gp¨©gqcm^g̀pb\[ngbbkbme_abl^f_[^ceb̀\b`]g\^l gYee^f\bil^fc_\g|ns`\bfZ_\]hbq̀p_c][f^_ff_qi_\_gb\[_ZmbYgbi_g ]ZeY\_Zii]llbfbZ\]_`q̀bdefbggbiabZbgk]``mbbd\f_[\bi_Y\^c_\][_`q̀ Yg]Zacb\j^iglf^c_efbh]^Ygq̀eYm`]gjbi^Z`]Zbc][f^_ff_q_Z_q̀g]g\^^` r_ff_qc]Z]ZanZb\p`__mtuvwxryzz{||nª^fb^hbfp\jbYgbf[_Z_ii`_mbg̀ «\jbgb_Y\j^fg[^Z\f]mY\bib¬Y_`q̀\^\j]gk^f \^kj^c[^ffbge^ZibZ[bgj^Yìmb_iifbggbi gb\i^bgZ^\b̀Zi]\gbl̀\^i]fb[\lYZ[\]^Z_`]Z\bfefb\_\]^Zn^kbhbfp o^e^sbZ_mb̀g\jbYgbf\^[^ce_fb\jbef^ebf\]bg^l_i_\_gb\^l]Z\bfbg\ \^_cY`\]\Yib^lefb~ib}Zbii_\_gb\g[^ffbge^Zi]Za\^Z^kZlYZ[\]^Z_` ef^[bggbglf^c eYm`][i_\_m_gbgnX^f\jbjYc_Zgeb[]bgp\jbgb]Z[Ỳib g]aZ_``]Zae_\jk_qgr¦p_Zbj]g_tuvwxryzzâ|pÝ]^©_f\_p¨]gj]cYf_ ryzz||pbZbãZ\^`^aqrÝ]^`^a][_`Ãf^[bggpª^b̀[Y`_fXYZ[\]^Z_Zi ©b`Ỳ`_f©^ce^ZbZ\psgjmYfZbftuvwxryzzz||_ZiZ\bfÃf^ef^\b]Zi^c_]Zg rsekb]b̀ftuvwxpyzz|nYcc_f]bg^lZb\k^f\^e^`^a][_`ef^ebf\]bg_fb ef^h]ibil^f_``abZb°ef^\b]Zgb\gp_Zi]Z\jby§_ZiÞ§e`^\gi]llbfbZ\ [^`^Yfgi]g\]ZaY]gji]llbfbZ\i_\_gb\gnägbfg[_Z]ibZ\]lqe_\jk_qg_Zi ef^[bggbgg]c]`_f\^\jbYe`^_ibii_\_gb\h]gY_`q̀pm_gbi^Z\jbe`^\g^fm_gbi ^Z_\_mY`_ff_Z]ZaYg]Za_ZYcbf][_`g[^fb\^¬Y_Z\]lq\jbg]c]`_f]\q_[f^gg _``\^e^`^a][_`ef^ebf\]bgnojbg]c]`_f]\qg[^fb]g^m\_]Zbimq[^ceY\]Za åf_Zgl^fb_[je_\jk_q°ef^[bgggb\_[[^fi]Za\^\jb_mg^Ỳ\bi]llbfbZ[bg mb\kbbZb_[j^l]\gåcbi]_Z\^e^`^a][_`ef^ebf\]bg_Zi\jb[^ffbge^Zi]Za R 012234521 +,,1.DXJRN*J%&'()D+,,-.!B!*X]5 %&'()D+,,-.. !!F3 !#!! #0!"!JBK YBK3!!!03#!#!! *0!3K!!6!D3 2!F!!!JBKYB! 3!!^N_!!"./F!"! !5!!"3ZMZ+!!M``La!!/!#D !!!!53"!#*/0.D b#*N/!".D *I/"!.!!*/!.0 ! !""#3!!5! QRBN*5%&'()D+,,E.!* K!!"3!!!5./ ##!"!# 0!!!!3!"!/Y0D !!!5/0!!!! K0!^_K!!"/ 6789 9 !!"! :cd>We=8fg8;8>V #$%&'()*+,,-../."! !!0*1.!*+.2 ."!! 5 # YKI #K"K!!" "hYKIK+,,-K,,aLZaiDQ!"#!Q" !3!*4./ !RI!hQQH$,1`LL[H1i!!Y!#3 !!!hQBj+,,aKEE`LLi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k8l8k8>c8@ !"Dm/%&'()*+,,Z.I0#3"!!!/nop nqrqstruv'&qwxy z*1.D+aL/ DR/%&'()*+,,1.B!JD!!"!! 3!3D!!3!!/{|w(%qw}wq~x%xy*1.DMa/ !DY/%&'()*+,,,.!j!"#G3!F!3 "#/{'& %s%&yD+L+Z/ QD/%&'()*+,,1.QB\N !!!5/{|w(%qw }wq~x%xy*1.D+-++-L/ Q!DJ/%&'()*+,,1."!0K53!#3# !/ rw{%&ruxy*M.D1Z1+,1/ $DJ/%&'()*+,,-.!3!!"!/{'&%p'sw%uy*M.D 1aa1`M/ D/%&'()*+,,Z.#Y!!"GK!3#!# !!"! !!!K#!6!/nop nqrqstruv'&qwxy z*1.DML`/ X]5DX/%&'()*+,,-.B!G!!!!/ {|w(%qw}wq~x%xy*NB.DN-L+N-LL/ C!!D/%&'()*+,,1.!53!"!3"K" !#3"!!/{'&%s%&y*1.D+1+`/ C!!DJ/%&'()*+,,E."33!!!! !/nqrqstruv'&qwxy*1`.D++Z1++Za/ 4!DY/%&'()*+,,E.$"!"!G!0!! 4/{|w(%qw}wq~x%xy*NB.DNML-NMLa/ 4!"DY/%&'()*+,,`.m!5!""!G!!"D!3! !D!0!3 "#/%srv%nqr(y*+.D`/ YDX/%&'()*1ZZZ.YBJG3"!!!!/{|w(%qw }wq~x%xy*1.D---`/ \DN/*+,,1.QI/nqr&%w rt&'u%s&%us%&%ru&y*M.D11a1+,/ JD/%&'()*+,,-.X!!3!0#3 /{|w(%qw}wq~x%xy*NB.DN-Za/ !DQ/%&'()*+,,,.RB\GK00!## !"!"3"!/{|w(%qw}wq~x%xy*1`.DM--+M---/ 5DI/%&'()*+,,E.QRBNG"!#3!!/{|w(%qw }wq~x%xy*NB.DNLML/ S"!DQ/T4!6D4/*+,,-.I!"!!##!/{'& o%~y z*`.Da`ZaZZ/ PDN/T"6D/*1ZZ`.I0#!3OKO!5/{'&|u%y *EE`-.D--,--+/ [!DB/%&'()*+,,,.NBJG3!!"!/{|w(%qw}wq~x%xy *1.D+`Z+Z1/
© Copyright 2026 Paperzz