Adapted from NOVA Activity: Cracking the Code of Life Biotechnology Workshop A: Cheek Cell Extraction LEARNING GOALS: After the completion of this workshop, students will understand: 1. 2. 3. Students will learn a simple DNA extraction procedure Students will learn the function of DNA and how DNA is contained within cells Students will learn how DNA can be isolated from cells by performing a DNA extraction from the own cheek cells CONCEIVE – What do I wish to accomplish through this project? This stage involves guiding students in defining the goals of the project, then helping them develop conceptual, technical and action plans to meet those goals while considering the technology, knowledge, and skills that apply. This guidance is provided in the form of Essential Questions that use student’s preconceptions, and misperceptions then move them toward a deeper and more realistic understanding of the process and skills needed to complete the project. ESSENTIAL QUESTIONS: 1. What is DNA? Where is it housed within a cell? 2. What does DNA do? What can DNA tell us? 3. How can we isolate DNA? NOTES: Each step in the process of DNA extraction should be explained for additional concept clarity. DESIGN - How will I accomplish the project? 1. An introductory lecture will provide students with the basic knowledge needed to complete this workshop. This lecture should cover some cell biology terms, such as DNA, chromosome, cell lysis, isolation, and extraction. 2. Additionally, further concept clarification will be provided throughout the students’ working time. 3. Explain how each reagent and how each step contributes to the eventual DNA isolation. Copyright University of Colorado Colorado Springs, 2011. For permission to use these materials, contact the Director at the Center for STEM Education, (719) 255-3595. Curriculum format design adapted from CDIO developed by MIT. NOTES: In the P Drive, “DNA Necklace kit instructions.docx” provides sufficient background information for this project. IMPLEMENT - From an idea to a product! Procedure: This procedure will collect some of the buccal cells that line the inside of your mouth. These cells are continuously being sloughed off by your cheeks. 1. Swill 2 teaspoons (10ml) 0.9 percent salt water in your mouth for 30 seconds. 2. Spit the water into your cup. Pour this into a large test tube containing 1 teaspoon (5 ml) 25 percent liquid detergent. 3. Cap tube and gently rock it on its side for 2–3 minutes. The detergent will break open the cell membrane to release the DNA into the soap solution. 4. Open and slightly tilt the tube and pour 1 teaspoon (5 ml) fluid ounces of the chilled 95 percent ethanol down the side of the tube so that it forms a layer on the top of your soapy solution. 5. Allow tube to stand for 1 minute. 6. Place a thin acrylic or glass rod into the tube. 7. Stir or twirl the rod in one direction to wind the DNA strands onto the rod. Be careful to minimize mixing of the ethanol and soapy layers. 8. After you have wrapped as much DNA onto the rod as you can, remove the rod and scrape/shake the DNA into a small tube containing the rest of the 95 percent ethanol. Your DNA should stay solid in this solution. NOTES: In this activity, you’ll break away the membrane around the cell and its nucleus so that you can see your very own DNA. OPERATE – Does it work the way I planned? Do not be too vigorous while mixing in step three. DNA is a very long molecule. Physical abuse can break it into smaller fragments, a process known as shearing. If too much shearing has occurred, the DNA fragments may be too short to wind up, and they may form clumps instead. You can try to scrape these out with the rod. Students may take home their DNA within a small centrifuge tube. RESOURCES NEEDED – What equipment and supplies do I need? Copyright University of Colorado Colorado Springs, 2011. For permission to use these materials, contact the Director at the Center for STEM Education, (719) 255-3595. Curriculum format design adapted from CDIO developed by MIT. Microcentrifuge pendant tubes 15 mL tubes 1-oz plastic cups Plastic pipets (3-mL, graduated) Colored string to make necklace with pendant tube 25-mL bottles of cell lysis solution (liquid detergent) 100-mL bottles of chilled 95% ethanol .9 percent salt water Glass rods SET-UP Chill the ethanol by storing it in the freezer or a bucket of ice until ready to be used. Pour salt water solution into plastic cups for each student. Cut the string such that there is enough for each student to have one. Set up a solution station for dispensing the cell lysis solution or have bottles of detergent available for students. Each student also gets a 15-mL tube, a plastic pipet, and a pendant tube. Copyright University of Colorado Colorado Springs, 2011. For permission to use these materials, contact the Director at the Center for STEM Education, (719) 255-3595. Curriculum format design adapted from CDIO developed by MIT. Colorado State Standards - High School 21st Century Skills 2. Life Science Students can: a. Develop, communicate, and justify an evidence-based scientific explanation of how cells form specialized tissues due to the expression of some genes and not others b. Analyze and interpret data that show most eukaryotic deoxyribonucleic acid (DNA) does not actively code for proteins within cell Concepts and skills students master: 6. Cells, tissues, organs, and organ systems maintain relatively stable internal environments, even in the face of changing external environment 8. Multicellularity makes possible a division of labor at the cellular level through the expression of select genes, but not the entire genome Colorado State Standards – Eighth Grade 21st Century Skills 2. Life Science Students can: a. Develop, communicate, and justify an evidence-based scientific explanation for how genetic information is passed to the next generation b. Use direct and indirect observations, evidence, and data to support claims about genetic reproduction and traits of individuals Concepts and skills students master: 2. Organisms reproduce and transmit genetic information (genes) to offspring, which influences individuals’ traits in the next generation Inquiry Questions: 1. How are traits passed from one generation to the next? Colorado State Standards – Seventh Grade 21st Century Skills 2. Life Science Inquiry Questions: 1. How does each body system contribute to supporting the life of the organism? 2. How do organs and organ systems in the human body interact to perform specific functions? Concepts and skills students master: 2. The human body is composed of atoms, molecules, cells, tissues, organs, and organ systems that have specific functions and interaction Copyright University of Colorado Colorado Springs, 2011. For permission to use these materials, contact the Director at the Center for STEM Education, (719) 255-3595. Curriculum format design adapted from CDIO developed by MIT.
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