Supp. Figure 3
Mean # reads = 49,754 (15,292 – 264,499)
1.00
0.95
0.95
0.90
0.90
0.85
0.85
0
0
10,000
8000
8000
E
D
6000
6000
4000
4000
2000
2000
0
B
0
F
Number of transcripts
60,000
80,000
40,000
40,000
20,000
Read downsample ratio
0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0
Read downsample ratio
Mean # reads = 413,677 (118,113 – 900,612)
1.00
1.00
0.95
0.95
0.90
0.90
0.85
0.85
0
0
12,000
8000
6000
8000
4000
4000
2000
0
0
60,000
200,000
40,000
100,000
20,000
0
0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0
3T3 (mouse)
Mean # reads = 905,013 (93,116 – 5,097,658)
80,000
120,000
Number of transcripts
HEK (human)
Fraction transcripts
organism specific
3T3 (mouse)
Mean # reads = 72,042 (13,117-463,354)
1.00
Fraction transcripts
organism specific
Number of genes
C
HEK (human)
Number of genes
A
0
0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0
Read downsample ratio
0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0
Read downsample ratio