sorting it all out Coated pits and coated vesicles .Tomas Kirchhausen Harvard Medical School and Center for Blood Research, Boston, USA. Clathrin-coated structures are involved in the first steps of membrane vesiculation which lead to receptor sorting and directed traffic. This review focuses on our current kderstanding of clathrin and its associated proteins, the major components of the coat. Recent experiments provide new insights into the interactions between these proteins. Current Opinion in Structural Introduction Clathrin-coated pits and coated vesicles represent a major pathway of directed membrane tralfic, and are important both in endocytosls and in regulated secretion via the trans-Golgi network (for recent reviews, see [ 1,2]). This is a fascinating and apparently basic cellular mechanism which is found in all nucleated eukaryotic cells. The original electron microscopic observations of invaginated areas of cell membrane surrounded by a dense ‘coat’ led Roth and Porter [3] to suggest, with remarkable insight, that these ‘coated pits’ pinch off a section of membrane, to form ‘coated vesicles’ which transport specilic proteins. The broad outline of this hypothesis is still accepted, but today, almost 30 years later, we are only beginning to learn the details of how this cellular organelle functions. There has been considerable progress in elucidating the biochemistry and molecular biology of the clathrln coat, including the cloning of clathrin itself and the major proteins associated with isolated coated vesicles. It has proved dillicult to obtain interpretable data on the behavior of the associated proteins, because these proteins tend to aggregate in physiological solutions. Yet the recent development of new in vitro systems of clathrln assembly offers hope that new insights may soon be forthcoming. Structure Biology 1993, 3:182-188 main’ [4]. Recent experiments with yeast have shown that deletion of a poorly conserved 57 amino acid sequence at the extreme carboxyl-terminal end of the heavy chain does not prevent trimerlzation [5]. Light chains contain a. central domain of 10 heptads repeats, characteristic of a helical coiled coil, which is necessary for the interaction with heavy chain [6-8], and were originally predicted to have an extended conformation [8] ; polyclonal antibodies to light chain bind along most of the length of the proximal leg of heavy chain (16 run) [9]. It has recently been proposed, on the basis of antibody competition experiments, that the light chain is instead bent through 180” in the middle of the central domain, and should therefore extend along only 5-6 nm of the proximal leg [lo]. We have reexamined this issue using electron microscopy of epitope-tagged light chains, and have found that, as predicted, the central domain of the light chain extends along most of the heavychain proximal leg (12.2 f 4.4~1) [ll]. The carboxyl terminus is located near the triskelion vertex whereas the amino terminus is positioned 13.1 f 5.2 nm from the vertex. The beginning and the end of the amino-terminal domain are found in essentially the same place, indicating that it either folds back on itself or has a globular conformation. Structure of clathrin The main protein components found in the coat of coated vesicles are clathrin and two associated protein complexes (APs), AR-1 and AR-2. Clathrln comprises three heavy chains and three light chains, arranged as shown in Fig. 1. The three legs are extended and relatively stitf, and are held together by interactions towards the carboxyl terminus of the heavy chain, at the vertex of the triskelion-shaped molecule. The legs can be divided into proximal and distal segments, the distal segment ending with a globular structure called the ‘terminal do- of the associated @ Current Biology complexes M-1 and AR-2 are related tetramers found in association with coated structures localized on the trans-Golgi network and at the plasma membrane (Fig. 2; for a recent review, see [ 121). Each complex contains two large chains (a and p for AR-2, p’ and y for AR-l), one medium chain and one small chain. In vitro under physiological conditions, where clathrin remains trlmeric, AR-1 or M-2 interact with clathrin and assemble with it to form small coats. The stoichiomeny of the polypeptide chains in Aps has been controversial, but evidence that each complex conu%ins one medium and one small chain has recently Abbreviation AP-associated protein complex. 182 protein Ud ISSN 0959-440X Coated and Clathrin Clathrin coated vesicles Kirchhausen coat Arrii;~;art;inal Central domain 23-25 pits / Membrane kUa / c Distal leg 4 Terminal domain coated pit Fig. 1. Representation of the heavy and light chains of a clathrin trimer free in solution and within the clathrin lattice. The clathrin molecule, which is triskelion-shaped, is not flat but has ‘pucker’ appropriate to the vertices and edges of a truncated icosahedron, which is the most frequent design of clathrin lattice found in bovine brain coated vesicles 1601. Both classes of light chain (LCa and LCb) bind to the same site on the heavy chain, extending along the whole length of the proximal leg. The terminal domains project towards the membrane. The APs are located beneath the clarhrin edges. been provided [IS]. All four large chains can be proteolytically cleaved into two domains, the ‘trunk (the amino-terminal two thirds of each molecule) and the ‘ear’ (the carboxyl terminus), connected by a linker which is rich in proline and glycine [13,14,15*]. The p and p’ chains are very closely related; the trunks of these chains are 93 % identical in sequence, with most of the variability residing in the linker region [ 141. There are two CLchains in AP-2, cLBand tic, and the trunks of these chains are also 92 % homologous, again with the largest divergence in the linker region [16]. There is no a-p or P-r homology, but the trunks of a and y are 31% identical [171. The medium chains can be separated into three regions [ 181. The carboxy-terminal and amino-terminal regions elegam are well conserved in the known Caenorhbditti (P Stenberg, J Le, G Jongeward, personal communication) and rat and yeast homologs [IS]. The AP50 of AJ?2 has a ttypsin-sensitive site between the central region and the carboxyl-terminal region which is cleaved when AP-2 is present in clathrin coats but not when the AT-2 complex is isolated [ 131. A conformational change in the AP upon binding to clathrin might explain this observation. Trunk AP-1 Fig. 2. Relationship between the major associated protein complexes AP-1 and AP-2. AP-7 contains the large chains y and j3’, the medium chain AP47 and the small chain AP-19, whereas AP-2 contains CL and p, AP50 and AP-17. C, carboxyl terminus; N, amino terminus. 183 184 Macromolecular assemblages Interactions between klathrin associated protein complexes and the Initial results indicated that the AP core, which comprises the trunks of both large chains plus the medium and small chains (Fig. 2), remains associated with dathrin after proteolysis resulting in the loss of both ears [ 13,191. But it has recently been shown, in a different buffer systern, that an intact p or p’ chain is required to maintain association of@-2 or AP-1 with clathrin lattices, and that intact p chains can themselves bind clathrin [15*,20]. Although aggregated a chains co-precipitate with clathrin [ 2I**], there is so far no evidence that monomeric a or y chains interact directly with clan-u-in. The observation that an intact p or p’ chain is required for association with clathrin suggests that both the trunk and the ear may bind clathrin, perhaps at different sites. The light chains are not required for Ap binding [ 14,22,23]. TWO sites on the clathrin heavy chain are important for binding APS, one :in the terminal domain and one either in the proximal leg or in the first portion of the distal leg [23,24]. In physiological buffers, intact APs are required for clathrin coat assembly. Core APs will not substitute ,for intact ones [25], implying that the ears participate in some way in coat assembly. An exciting development has been the demonstration that reconstituted APs can also drive assembly [21**]; this may pemlit an analysis of which domains of the AP chains are important for coat formation. The possibility that at least two sites on the APs are required for interaction with clathrin is interesting in view of the evidence that two sites on clathrin are involved in AP binding. The importance of the distal/proximal leg site has been overlooked because electron microscopic observations appeared to imply that AI% and clathrin meet only at the clathrin terminal domain [ 261. Analysis of the radialdistribution of the average electron-density pro&es of reassembled clathrin-AP coats showed three peaks: the outer peak corresponded to clathrin legs, the middle peak to the terminal domains of clathrin, and the inner peak to the APs. As the intensity of the clathrin peaks did not change significantly when Aps were bound, it has been assumed that no part of the APs can reach towards the clathrin legs. Yet, the ratio of clathrin trimers to AP-2 in reconstituted coats is N 2:l (T Kirchhausen, unpublished data); thus, there are six clathrin heavy chains for every AP chain. The mass expected for six clathrin terminal domains is -300 kDa; the mass of one P-chain ear is 35 kDa. Therefore, if the fichain ear reaches out to contact the clathrin heavy chain, the contribution to the electron density might be difficult to detect. It would be even harder to detect a P-chain ear in the peak corresponding to the clathrin leg (35 kDa and 750 kDa, respectively). Thus, there is little evidence to refute the idea that p/p’ chain ears bind directly to clathrin. This hypothesis needs to be tested. Other associated proteins Three new APs, called auxilin, ~140 and NP-185 @P-I80 or AP-3) have been identified recently in vesicles from bovine brain but, so far, little is known about their biochemistry and function [23,27-291, All three proteins can drive coat assembly in vitro, and all are monomeric. Auxilin and NP-185 appear to be specific to the brain. It will be interesting to determine whether these proteins are specifically involved in synaptic membrane recycling and whether analogs exist in other tissues. Receptor selection Coated vesicles transport a highly selected subset of the proteins available in the membrane; specific receptors are concentrated up to 100-fold in the coated pit. Sequences in the cytoplasmic tail of the receptor, and especially the presence of a tyrosine .residue, are crucial for internalization, although the consensus is very loose (see 1301 for review), indicating that recognition is promiscuous. It seems unlikely that the clathrin heavy and light chains are responsible for selection, because they are essentially invariant. AP-1 and AP-2 have significant variability in the large chains [14,16,17], and are situated between the clathrin coat and the membrane [26,31]. The AP-1 and AP-2 complexes are specific for the trans-Golgi network and plasma membrane, respectively (see [12] for review), and AP-2 will bind back to plasma membranes after coats are stripped with solutions of high molarity Tris buffers [32]. These observations have led to the suggestion that AP complexes are responsible for receptor selection. It has however so far proved difficult to show direct interactions between the APs and receptor tails, perhaps because of the promiscuity of recognition. APs have been shown to bind to affinity columns composed of receptor cytoplasmic tails made with fusion proteins or synthetic peptides (A Hille-Rehfeld, personal communication) [ 33,341. These experiments, although suggestive, are puzzling in that the extent of AP retention on the column implies association constants in the micromolar range and that millimolar concentrations of soluble peptide are necessary to compete with this binding. The relatively high apparent affinity of APs for the tail columns might therefore reflect the multivalent attachment of aggregated APs. Indeed, APs are known to associate extensively under the conditions required for these experiments [ 13,351. Further evidence for direct binding between APs and receptor tails comes from the demonstration that recombinant receptor tails bind to the trunk of trypsin-digested p chain after SDS-PAGE and transfer to nitrocellulose sheet [36]. But the recombinant tails also bound to the trypsin used for digestion, making the specificity of this interaction questionable. Because AI% can also drive the formation of coats in vitro, a two-stage model, in which receptor tails pre- Coated associate with APS, then cluster, triggering assembly of the clathrin lattice, has been widely discussed. It is however still unclear whether the coated pit does form in stages. Neither receptor-AP pre-association nor receptor pre-clustering has been observed in electron micrographs but, in each case, there are reasons, including the lack of appropriate reagents, for believing that such events would be hard to see. As the formation of a coated vesicle takes only 1 min, it is difficult to imagine how receptor concentration and sorting can be achieved if receptor pre-clustering does not occur. The hypothesis that receptor tails are sufficient for AP binding raises the question of how the specific localization of APs is achieved. Given that APs are also found in the cytosol, why is it that, when recycling receptors are expressed in the trans-Golgi network, they do not attract the plasma membrane complex AP-2? One solution is that membrane-bound ‘docking proteins’ mediate the attachment of the APs to the correct membrane. A mechanism for the segregation of docking proteins to the plasma membrane and trans-Golgi network is also unknown. Circumstantial evidence for the existence of a docking protein comes from experiments in which plasma membranes were treated with elastase before or after removal of the clathrin coat, and the ability of the membrane to bind APs was measured [32]. When the membrane is treated with elastase in the absence of the coat, it loses its ability to bind APs; the presence of the coat presumably protects the elastase-sensitive factor. It is possible to imagine that the complex of an AP with a docking protein might form a nucleus for the accretion of APs, which then bind to specific receptor tails present in that membrane. Because the binding events are constrained to take place in two dimensions, a relatively low binding constant for individual AP-receptor tail interactions could give a much higher apparent binding constant. Such a model might explain the observed tendency of APS to aggregate in vitro, as the initial accretion step would require AP-AP binding. This model would also rationalize the high binding constant obtained when (presumably associated) APs bind to receptor tails arrayed on a column. There are intriguing hints that the aggregation of AP-2 is controlled by molecules involved in cellular signaIling. Inositol 1,4,5triphosphate and inositol hexaphosphate, which are presumed second messengers in the polyphosphoinositide signaIling pathway, inhibit AP-2 aggregation in vitro, probably by binding to the trunk of the a chain [35,37-391. Phosphatidylinositol 4,5-bisphosphate also binds to the a chain ofAP-2, but not to the y chain of AP-1, in vitro, which is interesting because, in mammalian cells, this lipid is only found in the plasma membrane. It is clear that endocytosis is controlled in circumstances such as mitosis, where all endocytic activity stops [40], and in a more artificial, but nonetheless interesting, system of osmotic shock combined with K+ depletion [41]. These observations may allow investigation of the cellular control of coated pit and coated vesicle formation. Pit formation nits and and vesicle coated vesicles Kirchhausen budding Although the formation of coats in vitro in physiological buffers requires only clathrin and AI%, there is increasing evidence that other factors are required for the formation and budding of coated pits. Three new in vitro systems involving broken cells have allowed the dissection of some of the events involved. In the first of these, the top membrane of a cell is allowed to adhere to a glass coverslip, then torn away by removing the coverslip. Clathnn and APs can then be removed from the membrane by washing with two high molar&y Tris buffers. Although purified APs bind to these stripped membranes, purified clathrin does not, and no coated pits can form [42]. Interestingly, in the absence of stripping and in the presence of added cytosol, this system allows the budding of preformed coated pits [43]. Thus, it appears that a factor(s) in the cytosol or in the membrane is required for the formation of pits, at least in this system. It is also possible that the clathrin present in the cytosol is modified in some unknown way. Similarly, in a second broken-cell system featuring mechanicaUy disrupted cell membranes which can support one round of endocytosis, clathrin puriiied from cytosol, but not clathrin purified from coated vesicles, facilitates the budding of coated vesicles. In this system, purified APs can support budding [44]. This is exciting, as it may be possible to use this broken ceU system to dissect which elements of the APs are involved in the different stages of budding. The third new in vitro system uses cells broken by freeze-thawing [45] or by mechanical disruption [46], and allows one to infuse coat components and follow their localization in the cell. Localization of AP-1 to the trans-Golgi network can be seen in this system. It is enhanced by the addition of GTP-yS, and blocked by Brefeldin A. The effect of the latter is reversed by A+ The influence of all these compounds parallels their effects on trimeric G proteins. The participation of such proteins in AP-1 localization therefore seems likely. Recently, two proteins have been implicated in coated vesicle formation. Using the glass-adhered-membrane model described above, it has been shown that depletion of cytosol using antibodies to annexin VI, a phospholipid-binding protein, blocks coated vesicle formation at a point just before budding occurs [47]. It has therefore been proposed tha? annexin VI may be involved in the membrane fusion event that is required for the bud to pinch off from the membrane. The genetic defect in Drosophila sbibire mutants which cause a failure to complete the closure of coated pits has also recently been identified [48]. The gene encodes dynamin, which was originally isolated from rat brain as a microtubulebinding protein with GTPase activity [49]. A further clue that unidentiIied factors may be involved in vesicle formation comes from the observation that the size and topology of the clan-u-inlattices produced in vivo is different from the smaU clathrin-AP coats produced in vitro, and vanes according to the cells from which the vesicles are purified. The average size of vesicles from tissues other than brain is - 100-150 nm, whereas that of brain vesicles is - 70-90 nm and that of coats assem- 185 186 Macromolecular assemblaees bled in vitro is - 70 MI. Thus, tissue- and site-specific proteins might regulate the size of the vesicles formed in vivo. It is also possible that the kinetics of vesicle formation, or the need to distort the membrane to form a vesicle, influence the size of vesicle produced. In the glass-adhered membrane system, clathrin is often observed as sheets of hexagons underlying the plasma membrane, which disappear as coated pits are formed [43,50]. It is frequently assumed that these are an in$ial stage of coated pit formation. But the introduction of the proper number of pentagons for curvature requires major molecular rearrangement (see Fig. 3) and seems unlikely to be favored energetically. That clathrin assembly is the driving force in vesicle budding [ 511 would be eas ier to accept if the curved vesicle were assembled from soluble clathrin (see Fig. 1) and not rearranged from an assembled sheet. It is also hard to see how the correct number of pentagons could *be inserted at the correct places. It is worth noting that no structures intennediate between soluble clathrin and complete coats have been observed in r&-o. It is possible that, in the glass-adhered membrane system, the flat sheets depolymerize, providing the material for coated pit formation. The possibility that soluble clathrin is a necessar)’ intermediate in this process could be tested. In vivo experiments The biological functions of clathrin and its associated proteins have also been probed using genetic techniques. In yeast, the lack of clathrin heavy or light chain is not lethal, though the cells grow slowly [ 52-541; the major phenotype is mislocalization of some proteins normally found in the trans-Golgi network to the cell surface [ 55,561. Similarly, in Diciyosfelitrm, heavy-chain depletion by expression of antisense mRNA is not lethal and leads to an absence of coated structures and decreased endocytosis [ 571. In contrast, in Drosophila, lack of clathrin heavy chain is lethal, although embryos develop to a relatively late stage, presumably because of the presence of maternally derived clathrin (C Bazinet, personal cornmunication). It seems, therefore, that clathrin-mediated vesicular tral%c is crucial for the complex development and differentiation of tissues and is more important for multicellular than unicellular organisms, perhaps because cellLcell communication is tiected. The yeast homologs of APs p and p’, AP-47, AP-17 and M-19, most of which were identified by database search [l&58,59], have been disrupted in individual mutants but no phenotype has been detected (G Payne, S Lemmon, T Kirchhausen, unpublished data). It is hard to reconcile this lack of phenotype with the hypothesis that the Fig. 3. Rearrangements of clathrin mole- cules in a flat hexagonal sheet that would be required to transform a single hexagon into a pentagon. If hexagonal sheets are indeed intermediates in the budding of coated pits, major rearrangements of this kind would be necessary. Thick lines show the clathrin molecules that will need to be re-folded into the new lattice: dark grey lines indicate clathrin molecules originating on the left side of the removed section; black lines those originating on the right. The reader is invited to copy the diagram and to fold it along the lines indicated to see the new shape of the sheet. To make a spherical clathrin lattice, 12 such rearrangements would need to be performed at precise locations within the sheet. As clathrin has Fold here to join A and B K B natural ‘pucker’, with leg angles that are close to those required for the final cage 1601, it is easier to explain correct assembly of the clathrin coat if soluble clathrin ’ forms the curved coated pit directly by assembly on sequential vertices, instead of via a flat hexagonal intermediate. Coated APs either select receptors for inclusion into the coated vesicle or trigger the formation of clathrin coats, as disruption of either function would be expected to result in a mislocalization of trans-Golgi network proteins similar to the one observed in yeast for the clathrin heavy and light chain knockout. Yet, in C elegurzs, disruption of AP-47 suppresses the effect of the let-23 gene, a mutation of the membrane receptor responsible for vulva development, implying that AP-47 is involved in the receptor signalling pathway (P Stenberg, J Le, G Jongeward, personal communication). The expression of light-chain mutants and AP mutants in mammalian cells has so far failed to yield dramatic phenotypes, although it is possible that more subtle effects of these mutations might be detected upon further analysis. 5. 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Row TF, PORTERKR: Yolk Protein Uptake in the Oocyte of the Mosquito Aedes aegy@ J Cell Biol 1964, 20:313-331. P, KI~~~HHA~~ENT: Analysis of Clathfin Light Chain-Heavy Chain Interactions Using Truncated .Mutams of Rat Liver Light Chain LCB3. Biopby &em 1990, 265:3661-3668. 15. . I would like to thank S Lemmon, M Roth, S Schmid and B Ward for their insightful comments on this review. and recommended Kirchhausen KIRCHHAUSEN T, NATHAN~ONKL, MATsul W, VA&BERGA, CHOW EP, BURNEC, KEEN JH, DAVIS AE: Structural and Functional Division into Two Domains of the Large (IOO- to 115 kDa) Chains of the Clathcin-Associated Protein Complex AF-2. h-cc Nat1 Acud Sci (I S A 1989, 86:2612-2616. Acknowledgements References vesicles 4. Conclusion Although there is still limited understanding of the biological importance of clathrin-coated structures or the molecular mechanism by which directed tratfic is achieved, several important tools have recently been developed. 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